mRNA_M-pyrifera_M_contig121662.4457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121662.4457.1
Unique NamemRNA_M-pyrifera_M_contig121662.4457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A1X2HXZ2_9FUNG (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HXZ2_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 9.540e-7
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  196 RRQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDASLCDAFVGRLINHVRD 357
            R   M+A++L++FDR VL T  +++TQFL+FY C LDA     F+  L  HV D
Sbjct:  366 RTDEMYAILLDSFDRTVLKTIRSRYTQFLLFYFCSLDAQYASHFLDHLFQHVTD 419
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BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A433B9I5_9FUNG (RNA polymerase I-specific transcription initiation factor RRN3-domain-containing protein (Fragment) n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433B9I5_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 6.640e-5
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  199 RQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDA-SLCDAFVGRLINHVRD 357
            R  M  ++L+ FDR +L T+++++TQFL+FY C +DA +  DAF+G L+  + D
Sbjct:  182 RDEMLMILLDIFDRTILQTFKSRYTQFLLFYYCAIDAPTFPDAFLGHLVAKLID 235
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BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A507EII8_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EII8_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 7.300e-5
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  208 MFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDASLCDAFVGRLINHVRD 357
            +F ++L  FDR VL T++ + TQFL FYTC LDAS  + F+G L++ + D
Sbjct:  356 LFDVLLNVFDRTVLPTHKLRCTQFLWFYTCSLDASFPELFMGLLVSKLFD 405
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1X2HXZ2_9FUNG9.540e-746.30RNA polymerase I-specific transcription initiation... [more]
A0A433B9I5_9FUNG6.640e-542.59RNA polymerase I-specific transcription initiation... [more]
A0A507EII8_9FUNG7.300e-548.00Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121662contigM-pyrifera_M_contig121662:171..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.055012-CDS-M-pyrifera_M_contig121662:170..5271622815736.055012-CDS-M-pyrifera_M_contig121662:170..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121662 171..527 +
1692277545.1381595-CDS-M-pyrifera_M_contig121662:170..5271692277545.1381595-CDS-M-pyrifera_M_contig121662:170..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121662 171..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121662.4457.1prot_M-pyrifera_M_contig121662.4457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121662 171..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121662.4457.1

>prot_M-pyrifera_M_contig121662.4457.1 ID=prot_M-pyrifera_M_contig121662.4457.1|Name=mRNA_M-pyrifera_M_contig121662.4457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
SQRTTEVAEKLDVILQSMFQYLDERCGAVAPGVKGVESEDAHPLRASSST
STTASTSASSSLMDRRRQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCR
LDASLCDAFVGRLINHVRD
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mRNA from alignment at M-pyrifera_M_contig121662:171..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121662.4457.1 ID=mRNA_M-pyrifera_M_contig121662.4457.1|Name=mRNA_M-pyrifera_M_contig121662.4457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig121662:171..527+ (Macrocystis pyrifera P11B4 male)
TCCCAACGAACTACCGAAGTAGCTGAGAAACTTGATGTCATCTTGCAATC
TATGTTTCAGTATCTTGATGAAAGATGTGGAGCAGTTGCACCAGGTGTGA
AAGGTGTGGAATCTGAAGATGCTCACCCACTTCGAGCCTCTTCTTCCACC
TCCACCACTGCTTCTACTTCTGCTTCTTCATCATTGATGGATCGTCGTCG
TCAACACATGTTTGCGTTGGTGTTGGAGGCGTTTGATCGGTGTGTGTTAT
GTACATATGAAGCCAAGTTTACCCAATTTTTAGTGTTTTACACATGTCGC
TTGGATGCTTCCTTGTGTGATGCTTTTGTGGGGCGATTGATCAATCATGT
GCGTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121662:171..527+

>mRNA_M-pyrifera_M_contig121662.4457.1 ID=mRNA_M-pyrifera_M_contig121662.4457.1|Name=mRNA_M-pyrifera_M_contig121662.4457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig121662:171..527+ (Macrocystis pyrifera P11B4 male)
TCCCAACGAACTACCGAAGTAGCTGAGAAACTTGATGTCATCTTGCAATC
TATGTTTCAGTATCTTGATGAAAGATGTGGAGCAGTTGCACCAGGTGTGA
AAGGTGTGGAATCTGAAGATGCTCACCCACTTCGAGCCTCTTCTTCCACC
TCCACCACTGCTTCTACTTCTGCTTCTTCATCATTGATGGATCGTCGTCG
TCAACACATGTTTGCGTTGGTGTTGGAGGCGTTTGATCGGTGTGTGTTAT
GTACATATGAAGCCAAGTTTACCCAATTTTTAGTGTTTTACACATGTCGC
TTGGATGCTTCCTTGTGTGATGCTTTTGTGGGGCGATTGATCAATCATGT
GCGTGATTCCCAACGAACTACCGAAGTAGCTGAGAAACTTGATGTCATCT
TGCAATCTATGTTTCAGTATCTTGATGAAAGATGTGGAGCAGTTGCACCA
GGTGTGAAAGGTGTGGAATCTGAAGATGCTCACCCACTTCGAGCCTCTTC
TTCCACCTCCACCACTGCTTCTACTTCTGCTTCTTCATCATTGATGGATC
GTCGTCGTCAACACATGTTTGCGTTGGTGTTGGAGGCGTTTGATCGGTGT
GTGTTATGTACATATGAAGCCAAGTTTACCCAATTTTTAGTGTTTTACAC
ATGTCGCTTGGATGCTTCCTTGTGTGATGCTTTTGTGGGGCGATTGATCA
ATCATGTGCGTGAT
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