prot_M-pyrifera_M_contig121662.4457.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig121662.4457.1
Unique Nameprot_M-pyrifera_M_contig121662.4457.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length119
Homology
BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A1X2HXZ2_9FUNG (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HXZ2_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 9.540e-7
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0
Query:   66 RRQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDASLCDAFVGRLINHVRD 119
            R   M+A++L++FDR VL T  +++TQFL+FY C LDA     F+  L  HV D
Sbjct:  366 RTDEMYAILLDSFDRTVLKTIRSRYTQFLLFYFCSLDAQYASHFLDHLFQHVTD 419          
BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A433B9I5_9FUNG (RNA polymerase I-specific transcription initiation factor RRN3-domain-containing protein (Fragment) n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433B9I5_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 6.640e-5
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   67 RQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDA-SLCDAFVGRLINHVRD 119
            R  M  ++L+ FDR +L T+++++TQFL+FY C +DA +  DAF+G L+  + D
Sbjct:  182 RDEMLMILLDIFDRTILQTFKSRYTQFLLFYYCAIDAPTFPDAFLGHLVAKLID 235          
BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Match: A0A507EII8_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EII8_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 7.300e-5
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   70 MFALVLEAFDRCVLCTYEAKFTQFLVFYTCRLDASLCDAFVGRLINHVRD 119
            +F ++L  FDR VL T++ + TQFL FYTC LDAS  + F+G L++ + D
Sbjct:  356 LFDVLLNVFDRTVLPTHKLRCTQFLWFYTCSLDASFPELFMGLLVSKLFD 405          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121662.4457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1X2HXZ2_9FUNG9.540e-746.30RNA polymerase I-specific transcription initiation... [more]
A0A433B9I5_9FUNG6.640e-542.59RNA polymerase I-specific transcription initiation... [more]
A0A507EII8_9FUNG7.300e-548.00Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 3..117
e-value: 5.0E-18
score: 65.0
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 2..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121662contigM-pyrifera_M_contig121662:171..527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121662.4457.1mRNA_M-pyrifera_M_contig121662.4457.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig121662 171..527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig121662.4457.1 ID=prot_M-pyrifera_M_contig121662.4457.1|Name=mRNA_M-pyrifera_M_contig121662.4457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
SQRTTEVAEKLDVILQSMFQYLDERCGAVAPGVKGVESEDAHPLRASSST
STTASTSASSSLMDRRRQHMFALVLEAFDRCVLCTYEAKFTQFLVFYTCR
LDASLCDAFVGRLINHVRD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3