mRNA_M-pyrifera_M_contig121193.4367.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121193.4367.1
Unique NamemRNA_M-pyrifera_M_contig121193.4367.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A5A7THM1_CUCME (Protein C2-DOMAIN ABA-RELATED 11-like n=5 Tax=Cucumis TaxID=3655 RepID=A0A5A7THM1_CUCME)

HSP 1 Score: 68.2 bits (165), Expect = 4.480e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 QLRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWGFTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKAL 297
            +L+V+V++  NL+  D ++SDPYVV+ LG +KAKT+V K  LNP W     F       G +L+  V D DL  RDD +G   + L  ++    ++K L
Sbjct:   10 RLKVIVVQGKNLVIRDFRSSDPYVVVKLGKQKAKTKVIKNNLNPVWNEELTFKIDAEPTG-LLNFEVFDKDLFKRDDRMGRASINLQPMQSASRLSKIL 107          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: UPI001900FAE1 (protein C2-DOMAIN ABA-RELATED 11-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI001900FAE1)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 QLRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWGFTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKAL 297
            +L+V++++  NL+  D ++SDPYVV+ LG +KAKT+V K  LNP W     F   G     +L+  V D DL  RDD +G   + L  ++    ++K L
Sbjct:   10 RLKVIIVQGKNLVIRDFRSSDPYVVVKLGKQKAKTKVIKSNLNPIWNEELNF-TIGSEPTRLLNFEVFDKDLFKRDDKMGRASINLQPMQSASRLSKIL 107          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A6P8DFN3_PUNGR (protein C2-DOMAIN ABA-RELATED 11 isoform X3 n=4 Tax=Punica granatum TaxID=22663 RepID=A0A6P8DFN3_PUNGR)

HSP 1 Score: 66.6 bits (161), Expect = 2.280e-11
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 QLRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKALPLRATD 315
            QL+V V+R   L+  D K+SDPYVVL LG + AKT+V    LNP W    T    E  GV    LH+ V D D    DD +G+  V L  +     + + L L + +
Sbjct:   19 QLKVTVVRGKRLVIRDFKSSDPYVVLKLGNQTAKTKVISSCLNPVWNEELTLSLSEPVGV----LHIEVFDKDRFKADDKMGHAQVNLQPIVSAARLRQILKLSSGE 121          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: W4F7X5_9STRA (C2 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F7X5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.220e-11
Identity = 46/115 (40.00%), Postives = 58/115 (50.43%), Query Frame = 1
Query:    4 LRVMVLRADNLIAADKKT------SDPYVVLTLGTEKAKTRVEKETLNPAWGFTHVFGEKGGVDGDV--LHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKALPLRATDKMK 324
            LRV V+ A  L+A D  T      SDPYV LT GTE AKT+  K++LNP W     FGE   +D     LH  V+D +++   +DLG + V L  L         LPL     MK
Sbjct:    4 LRVKVVSASKLLALDSNTFGGGPSSDPYVRLTCGTETAKTKEVKKSLNPQWHEEFRFGEAVLLDVSTASLHFRVKDHNVLGPAEDLGEVTVALEPLLPSQWNKLTLPLETHTSMK 118          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: C0JA89_9ORYZ (ZAC n=10 Tax=Oryza TaxID=4527 RepID=C0JA89_9ORYZ)

HSP 1 Score: 67.4 bits (163), Expect = 5.690e-11
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 LRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPL 258
            L+V V+R   L   D  +SDPYVVLTLG +KAKTRV K  LNP W    T    +K G     L + V D D++SRDD +G  +V L
Sbjct:  167 LKVKVIRGTKLAVRDILSSDPYVVLTLGQQKAKTRVIKSNLNPVWNEVLTLSVPQKYGP----LKLQVYDHDVLSRDDIMGEAEVDL 249          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: J3MFQ9_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3MFQ9_ORYBR)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-10
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    4 LRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKAL 297
            L+V V+R   L   D  +SDPYVVLTLG +KAKTRV K  LNP W    T    ++ G     L + V D D++SRDD +G  +V L     + M+N A+
Sbjct:  509 LKVKVIRGTKLAVRDILSSDPYVVLTLGQQKAKTRVIKSNLNPVWNEVLTLSVPQRYGP----LKLQVYDHDVLSRDDIMGEAEVDL-----QPMINAAM 599          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A6P6UC27_COFAR (protein C2-DOMAIN ABA-RELATED 11 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6UC27_COFAR)

HSP 1 Score: 64.3 bits (155), Expect = 1.440e-10
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 QLRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKALPLRATDKM 321
            Q++V V+    L+  D K+SDPYV+L LG + AKT+V    LNP W   F+  F E  GV    L + V D D    DD +G+ ++ L  L     + + L + ATD M
Sbjct:    7 QIKVEVVHGKRLVIRDFKSSDPYVLLKLGNQTAKTKVINSCLNPVWNEEFSFTFSEPVGV----LKLEVFDKDRFKSDDKMGHAELSLQPLVAAARLKQILSV-ATDGM 110          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A8J5TBJ0_ZIZPA (Uncharacterized protein n=3 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TBJ0_ZIZPA)

HSP 1 Score: 66.2 bits (160), Expect = 1.740e-10
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 LRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPL 258
            L+V V+R   L   D  +SDPYVVLTLG +KAKTRV K  LNP W    T    ++ G     L + V D D++SRDD +G  +V L
Sbjct:  212 LKVKVIRGTKLAVRDMLSSDPYVVLTLGQQKAKTRVIKSNLNPFWNEVLTLSVPQRYGP----LKLQVYDHDVLSRDDIMGEAEVDL 294          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A484M0P5_9ASTE (C2 domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484M0P5_9ASTE)

HSP 1 Score: 63.9 bits (154), Expect = 1.950e-10
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 QLRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQL 267
            +L++ V++   L+  D ++SDPY++L LG + AKT+V    LNP W   FT    +  GV    L + V D D    DD++GY D+ L  L
Sbjct:    7 ELKIKVVQGRKLVVRDFRSSDPYIILELGNQAAKTKVINSCLNPVWNEEFTFPLSQPAGV----LKLKVFDKDRFKVDDEMGYADLDLRPL 93          
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Match: A0A0E0LDE8_ORYPU (Uncharacterized protein n=2 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LDE8_ORYPU)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-10
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 LRVMVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWG--FTHVFGEKGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPL 258
            L+V V+R   L   D  +SDPYVVLTLG +KAKT+V K  LNP W    T    +K G     L + V D D++SRDD +G  +V L
Sbjct:  167 LKVKVIRGTKLAVRDILSSDPYVVLTLGQQKAKTKVIKSNLNPVWNEVLTLSVPQKYGP----LKLQVYDHDVLSRDDIMGEAEVDL 249          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121193.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7THM1_CUCME4.480e-1238.38Protein C2-DOMAIN ABA-RELATED 11-like n=5 Tax=Cucu... [more]
UPI001900FAE11.760e-1137.37protein C2-DOMAIN ABA-RELATED 11-like n=1 Tax=Beni... [more]
A0A6P8DFN3_PUNGR2.280e-1138.32protein C2-DOMAIN ABA-RELATED 11 isoform X3 n=4 Ta... [more]
W4F7X5_9STRA5.220e-1140.00C2 domain-containing protein n=3 Tax=Aphanomyces a... [more]
C0JA89_9ORYZ5.690e-1147.13ZAC n=10 Tax=Oryza TaxID=4527 RepID=C0JA89_9ORYZ[more]
J3MFQ9_ORYBR1.080e-1043.00Uncharacterized protein n=2 Tax=Oryza brachyantha ... [more]
A0A6P6UC27_COFAR1.440e-1037.61protein C2-DOMAIN ABA-RELATED 11 n=2 Tax=Coffea Ta... [more]
A0A8J5TBJ0_ZIZPA1.740e-1045.98Uncharacterized protein n=3 Tax=Zizania palustris ... [more]
A0A484M0P5_9ASTE1.950e-1037.36C2 domain-containing protein n=3 Tax=Cuscuta sect.... [more]
A0A0E0LDE8_ORYPU2.010e-1045.98Uncharacterized protein n=2 Tax=Oryza punctata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121193contigM-pyrifera_M_contig121193:208..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog3659.XP_004162511.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ADP-ribosylation factor GTPase-activating protein
EggNOG OGs37TQJ@33090,3GI65@35493,4JPKU@91835,KOG1030@1,KOG1030@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.5938067-UTR-M-pyrifera_M_contig121193:207..2191622815731.5938067-UTR-M-pyrifera_M_contig121193:207..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121193 208..219 +
1692277543.039644-UTR-M-pyrifera_M_contig121193:207..2191692277543.039644-UTR-M-pyrifera_M_contig121193:207..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121193 208..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6039748-CDS-M-pyrifera_M_contig121193:219..5311622815731.6039748-CDS-M-pyrifera_M_contig121193:219..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121193 220..531 +
1692277543.051023-CDS-M-pyrifera_M_contig121193:219..5311692277543.051023-CDS-M-pyrifera_M_contig121193:219..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121193 220..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121193.4367.1prot_M-pyrifera_M_contig121193.4367.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121193 220..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121193.4367.1

>prot_M-pyrifera_M_contig121193.4367.1 ID=prot_M-pyrifera_M_contig121193.4367.1|Name=mRNA_M-pyrifera_M_contig121193.4367.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MVLRADNLIAADKKTSDPYVVLTLGTEKAKTRVEKETLNPAWGFTHVFGE
KGGVDGDVLHVLVRDFDLVSRDDDLGYIDVPLLQLRGRGMVNKALPLRAT
DKMK
back to top

mRNA from alignment at M-pyrifera_M_contig121193:208..531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121193.4367.1 ID=mRNA_M-pyrifera_M_contig121193.4367.1|Name=mRNA_M-pyrifera_M_contig121193.4367.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig121193:208..531+ (Macrocystis pyrifera P11B4 male)
CAGCTGCGCGTGATGGTGTTGCGCGCGGACAATTTGATTGCGGCGGACAA GAAGACGTCGGACCCGTACGTGGTGTTGACGTTGGGTACAGAGAAGGCGA AGACACGGGTGGAGAAGGAGACGCTGAACCCAGCGTGGGGTTTCACGCAC GTGTTTGGCGAGAAGGGAGGTGTGGACGGCGATGTTTTGCACGTGCTGGT GCGCGACTTTGACCTCGTGAGCCGTGACGACGACCTGGGCTACATCGATG TCCCTCTGCTGCAGCTGCGCGGCCGTGGCATGGTGAACAAGGCGCTGCCC TTGCGCGCGACGGATAAGATGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121193:208..531+

>mRNA_M-pyrifera_M_contig121193.4367.1 ID=mRNA_M-pyrifera_M_contig121193.4367.1|Name=mRNA_M-pyrifera_M_contig121193.4367.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig121193:208..531+ (Macrocystis pyrifera P11B4 male)
ATGGTGTTGCGCGCGGACAATTTGATTGCGGCGGACAAGAAGACGTCGGA
CCCGTACGTGGTGTTGACGTTGGGTACAGAGAAGGCGAAGACACGGGTGG
AGAAGGAGACGCTGAACCCAGCGTGGGGTTTCACGCACGTGTTTGGCGAG
AAGGGAGGTGTGGACGGCGATGTTTTGCACGTGCTGGTGCGCGACTTTGA
CCTCGTGAGCCGTGACGACGACCTGGGCTACATCGATGTCCCTCTGCTGC
AGCTGCGCGGCCGTGGCATGGTGAACAAGGCGCTGCCCTTGCGCGCGACG
GATAAGATGAAGATGGTGTTGCGCGCGGACAATTTGATTGCGGCGGACAA
GAAGACGTCGGACCCGTACGTGGTGTTGACGTTGGGTACAGAGAAGGCGA
AGACACGGGTGGAGAAGGAGACGCTGAACCCAGCGTGGGGTTTCACGCAC
GTGTTTGGCGAGAAGGGAGGTGTGGACGGCGATGTTTTGCACGTGCTGGT
GCGCGACTTTGACCTCGTGAGCCGTGACGACGACCTGGGCTACATCGATG
TCCCTCTGCTGCAGCTGCGCGGCCGTGGCATGGTGAACAAGGCGCTGCCC
TTGCGCGCGACGGATAAGATGAAG
back to top