mRNA_M-pyrifera_M_contig121178.4363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121178.4363.1
Unique NamemRNA_M-pyrifera_M_contig121178.4363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A537S8U3_9PROT (Aspartate/glutamate racemase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S8U3_9PROT)

HSP 1 Score: 179 bits (455), Expect = 2.450e-54
Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA  A VTS+ GHFCIRELEA+SPLP++NAIPA+D     +  +T+G+LGTR V+ET LY GISSA +V P+GD LD  H  Y++MA  GR    QR  F  +G+ LC  QGA+AV L GTDLFL F G + GFPV+DCA IHV+A+   S
Sbjct:   71 GASFAAVTSMGGHFCIRELEAISPLPILNAIPAVDAAIRQRNLRTIGVLGTRTVMETGLYAGISSAGIVRPEGDALDLVHKAYIEMAIVGRVTDAQRRVFFSIGQHLCGAQGAEAVMLGGTDLFLAFQGQDCGFPVLDCAEIHVEAIYQRS 221          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A7C2QZX2_9HYPH (Aspartate/glutamate racemase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QZX2_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 3.470e-54
Identity = 88/151 (58.28%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA AA VTS+ GHFCIREL AVSPLPLINA+P +D     +  +TVG++GTR V+ETRLYG ISSA +V P+GD LD  H HYV+MA  GR    QR  F   G +L  ++GA+ V L GTDLFL F G   GFPV+DCA IHV+A+  AS
Sbjct:   71 GAQAAAVTSMGGHFCIRELAAVSPLPLINALPEVDAAIRRRNLRTVGIIGTRMVMETRLYGAISSAAVVAPEGDALDEVHRHYVEMATVGRVSDAQRRVFFAAGARLVRDRGAEVVLLGGTDLFLAFQGESCGFPVLDCADIHVEAIYRAS 221          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A6A7MCZ3_9PROT (Aspartate/glutamate racemase family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7MCZ3_9PROT)

HSP 1 Score: 177 bits (448), Expect = 2.650e-53
Identity = 83/152 (54.61%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAST 456
            GA AA VTS+ GHFCI+ELEA+SPLPLIN +  +D H  ++  K V ++GTR V+E+RLYG I+SAE++ P+GD++   H  YV MA+SG   ++QR  F   GRKLC E+GA+AV L GTDLFL F G + GFPV+DCA +HV+A+   S+
Sbjct:   71 GAAAAAVTSMGGHFCIKELEAISPLPLINGLDPVDAHLRSRKLKKVAIIGTRTVMESRLYGKIASAEVLAPEGDEVGQVHRCYVTMAQSGHVAEEQRKTFFAAGRKLCGERGAEAVMLGGTDLFLAFVGHDAGFPVIDCADLHVEAIYKKSS 222          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A1Q3KZM9_9PROT (Aspartate racemase n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3KZM9_9PROT)

HSP 1 Score: 176 bits (445), Expect = 7.770e-53
Identity = 85/151 (56.29%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA AA VTS+ GHFC R+LEA+SPLPLINAIPA++    A+G K VG++GTRNV+E+ LYGGI+S E+V P+G+ L   H  YV MA  G   + QR  F  +G  LC ++GA+A+ L GTDLFL F G + GFPV+DCA IHV+A+ A S
Sbjct:   71 GARAAAVTSMGGHFCARDLEAISPLPLINAIPAVNAALGARGLKRVGIIGTRNVMESSLYGGITSVEVVRPEGETLAKVHDAYVAMAVPGIVTEAQREVFYTVGAALCRDRGAEAIVLGGTDLFLAFAGQDPGFPVIDCADIHVEAIYARS 221          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A521QN78_9HYPH (Aspartate/glutamate racemase family protein n=2 Tax=Reyranella TaxID=445219 RepID=A0A521QN78_9HYPH)

HSP 1 Score: 175 bits (443), Expect = 1.560e-52
Identity = 81/151 (53.64%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA AA VTS+ GHFC ++LEA+SPLPL+NAIPA++    A+G + +G++GTRNV+E+ LYGGI+S E++ P+G+ L   H  YV MA  G   + QR  F  +G +LC + GA+A+ L GTDLFL F G + GFPV+DCA IHVDA+ A S
Sbjct:   71 GAKAAAVTSMGGHFCAQDLEAISPLPLVNAIPAVNEALRARGLRRIGIIGTRNVMESSLYGGITSVEVIHPEGEKLGQVHDAYVAMAVPGHVTEGQRSLFFKIGAELCRDHGAEAIVLGGTDLFLAFAGHDPGFPVIDCADIHVDAIYARS 221          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A1F2ZSY3_9PROT (Aspartate racemase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F2ZSY3_9PROT)

HSP 1 Score: 171 bits (432), Expect = 6.810e-51
Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA AA +TS+ GHFC+REL A+SPLP++NAIP +D   A    K +G++GTR V+ETRLYGGI S E+V  +G DLD  H +YV+MA  GR  + QR  F +  R+L A +GA+A+ L GTDLFL F G + GF V+DCA IHVDAL A S
Sbjct:   71 GAKAAAITSMGGHFCVRELVAISPLPILNAIPEIDAALARSKLKKIGIIGTRTVMETRLYGGIYSVEVVPTEGGDLDRVHNNYVEMATVGRVTEAQRQVFFEASRRLVA-RGAEAIMLGGTDLFLAFAGHDPGFAVIDCADIHVDALYAKS 220          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A259MKC3_9PROT (Aspartate racemase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MKC3_9PROT)

HSP 1 Score: 168 bits (426), Expect = 5.510e-50
Identity = 83/151 (54.97%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA A  VTS+ GHFC+ EL A+SPLP++NAIPA+D   AA  ++ +G+LGTR V+E++LYGGI S E+V  +G  LD  H  YV MA  G   + QR  F + GR LCA +GA+A+ L GTDLFL F G + GFPV+DCA IHVDA+ A S
Sbjct:   71 GAQAVAVTSMGGHFCVNELMAISPLPVLNAIPAVDASLAAGKFRKIGILGTRTVMESKLYGGIPSVEVVPTEGAALDLVHDTYVAMATIGHVTEAQRQVFFEAGRALCA-RGAEAILLGGTDLFLAFAGHDPGFPVIDCADIHVDAIHATS 220          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: UPI001C24178D (aspartate/glutamate racemase family protein n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C24178D)

HSP 1 Score: 167 bits (424), Expect = 1.040e-49
Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            GA AA +TS+ GHFC+ EL A+SPLP++NAIPA+D   A   ++ +G+LGTR V+ET+LYGGI S E+V  +   LD  H +YV MA  G   + QR  F D GR+LC+ +GA+A+ L GTDLFL F G E GFPV+DCA IHVDA+ A S
Sbjct:   71 GAQAAAITSMGGHFCVNELMAISPLPILNAIPAVDASLAKGKFRKIGILGTRTVMETKLYGGIPSVEVVPTEA--LDLVHDNYVAMATVGHVTEAQRRVFFDAGRELCS-RGAEAIMLGGTDLFLAFAGHEPGFPVIDCADIHVDAIYAKS 218          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A4R5GVN6_9ALTE (Aspartate/glutamate racemase family protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5GVN6_9ALTE)

HSP 1 Score: 166 bits (420), Expect = 4.590e-49
Identity = 77/151 (50.99%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAS 453
            G DA  ++++AGHFCI ELEA+SPLP++N IP L+  F  +G+K +GLLG++  +E+++YGGI S E + P+GD LD    +Y+ MA SG+A   QR  F   GRK+  E GAD + LAGTDLFL F+G + GFPVVD A IH++ L + S
Sbjct:   70 GCDAVAISTMAGHFCIDELEAISPLPILNIIPILNDAFGERGFKKIGLLGSKVAMESKIYGGIDSVECIAPRGDALDIVSENYLSMALSGKALDSQREVFFREGRKMIEEDGADVIVLAGTDLFLAFEGHDPGFPVVDSADIHIEKLASLS 220          
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Match: A0A512NF29_9HYPH (Aspartate racemase n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NF29_9HYPH)

HSP 1 Score: 165 bits (418), Expect = 8.950e-49
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    1 GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLGTRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFFLDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAAST 456
            GA AA VTS+ GHFCI+ELEA+SPLPLIN +  +D     +G K VG++GTR V+ ++LYG I+ AE++ P+GD+ +     YVDMA  GR   QQR  F   GR+L A++GA+AV L GTDLFL F G + GFPV+DCA +HVDA+   S+
Sbjct:   71 GAQAAAVTSMGGHFCIKELEAISPLPLINGLDPVDAAINQRGLKRVGIIGTRVVMASKLYGKITKAEVIAPEGDEFERVQQCYVDMASIGRVVDQQRQTFFAAGRRL-ADRGAEAVLLGGTDLFLAFAGHDCGFPVIDCADVHVDAIYEKSS 221          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121178.4363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537S8U3_9PROT2.450e-5456.95Aspartate/glutamate racemase family protein n=1 Ta... [more]
A0A7C2QZX2_9HYPH3.470e-5458.28Aspartate/glutamate racemase family protein n=1 Ta... [more]
A0A6A7MCZ3_9PROT2.650e-5354.61Aspartate/glutamate racemase family protein n=1 Ta... [more]
A0A1Q3KZM9_9PROT7.770e-5356.29Aspartate racemase n=1 Tax=Alphaproteobacteria bac... [more]
A0A521QN78_9HYPH1.560e-5253.64Aspartate/glutamate racemase family protein n=2 Ta... [more]
A0A1F2ZSY3_9PROT6.810e-5155.63Aspartate racemase n=2 Tax=Alphaproteobacteria Tax... [more]
A0A259MKC3_9PROT5.510e-5054.97Aspartate racemase n=3 Tax=Alphaproteobacteria Tax... [more]
UPI001C24178D1.040e-4954.97aspartate/glutamate racemase family protein n=1 Ta... [more]
A0A4R5GVN6_9ALTE4.590e-4950.99Aspartate/glutamate racemase family protein n=1 Ta... [more]
A0A512NF29_9HYPH8.950e-4953.29Aspartate racemase n=1 Tax=Reyranella soli TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121178contigM-pyrifera_M_contig121178:76..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score179.9
Seed ortholog evalue9.2e-43
Seed eggNOG ortholog1205680.CAKO01000038_gene2047
KEGG rclassRC00302
KEGG koko:K01779
KEGG ReactionR00491
KEGG Pathwayko00250,ko01054,map00250,map01054
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Asp/Glu/Hydantoin racemase
EggNOG OGs1Q5M1@1224,2JXBQ@204441,2VBYG@28211,COG1794@1,COG1794@2
EC5.1.1.13
COG Functional cat.M
BiGG ReactioniHN637.CLJU_RS14520
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.3640735-CDS-M-pyrifera_M_contig121178:75..5341622815731.3640735-CDS-M-pyrifera_M_contig121178:75..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121178 76..534 -
1692277542.8982415-CDS-M-pyrifera_M_contig121178:75..5341692277542.8982415-CDS-M-pyrifera_M_contig121178:75..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121178 76..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121178.4363.1prot_M-pyrifera_M_contig121178.4363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121178 76..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121178.4363.1

>prot_M-pyrifera_M_contig121178.4363.1 ID=prot_M-pyrifera_M_contig121178.4363.1|Name=mRNA_M-pyrifera_M_contig121178.4363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
GADAAVVTSLAGHFCIRELEAVSPLPLINAIPALDLHFAAQGYKTVGLLG
TRNVLETRLYGGISSAELVLPQGDDLDATHAHYVDMAKSGRAEQQQRGFF
LDMGRKLCAEQGADAVALAGTDLFLVFDGLETGFPVVDCARIHVDALVAA
ST*
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mRNA from alignment at M-pyrifera_M_contig121178:76..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121178.4363.1 ID=mRNA_M-pyrifera_M_contig121178.4363.1|Name=mRNA_M-pyrifera_M_contig121178.4363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig121178:76..534- (Macrocystis pyrifera P11B4 male)
GGAGCAGACGCCGCGGTCGTGACGTCCCTGGCCGGCCATTTTTGCATACG AGAACTGGAGGCCGTCTCTCCGCTGCCGCTTATTAACGCCATTCCGGCGC TCGATCTCCATTTTGCCGCACAAGGGTACAAGACCGTCGGTTTGCTGGGA ACGCGAAACGTCCTGGAGACACGGCTCTATGGCGGAATCTCCTCAGCCGA ACTCGTGCTGCCGCAGGGGGATGATCTCGATGCGACCCATGCACATTATG TCGATATGGCAAAAAGCGGGCGCGCCGAGCAGCAGCAGCGAGGCTTTTTC CTGGATATGGGCAGAAAGCTCTGTGCCGAACAGGGCGCCGATGCCGTTGC ACTTGCCGGGACTGATCTGTTTCTTGTTTTCGACGGGCTCGAAACCGGAT TTCCGGTTGTTGATTGCGCGAGAATTCATGTCGATGCCCTGGTCGCGGCA TCGACATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121178:76..534-

>mRNA_M-pyrifera_M_contig121178.4363.1 ID=mRNA_M-pyrifera_M_contig121178.4363.1|Name=mRNA_M-pyrifera_M_contig121178.4363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig121178:76..534- (Macrocystis pyrifera P11B4 male)
GGAGCAGACGCCGCGGTCGTGACGTCCCTGGCCGGCCATTTTTGCATACG
AGAACTGGAGGCCGTCTCTCCGCTGCCGCTTATTAACGCCATTCCGGCGC
TCGATCTCCATTTTGCCGCACAAGGGTACAAGACCGTCGGTTTGCTGGGA
ACGCGAAACGTCCTGGAGACACGGCTCTATGGCGGAATCTCCTCAGCCGA
ACTCGTGCTGCCGCAGGGGGATGATCTCGATGCGACCCATGCACATTATG
TCGATATGGCAAAAAGCGGGCGCGCCGAGCAGCAGCAGCGAGGCTTTTTC
CTGGATATGGGCAGAAAGCTCTGTGCCGAACAGGGCGCCGATGCCGTTGC
ACTTGCCGGGACTGATCTGTTTCTTGTTTTCGACGGGCTCGAAACCGGAT
TTCCGGTTGTTGATTGCGCGAGAATTCATGTCGATGCCCTGGTCGCGGCA
TCGACATAGGGAGCAGACGCCGCGGTCGTGACGTCCCTGGCCGGCCATTT
TTGCATACGAGAACTGGAGGCCGTCTCTCCGCTGCCGCTTATTAACGCCA
TTCCGGCGCTCGATCTCCATTTTGCCGCACAAGGGTACAAGACCGTCGGT
TTGCTGGGAACGCGAAACGTCCTGGAGACACGGCTCTATGGCGGAATCTC
CTCAGCCGAACTCGTGCTGCCGCAGGGGGATGATCTCGATGCGACCCATG
CACATTATGTCGATATGGCAAAAAGCGGGCGCGCCGAGCAGCAGCAGCGA
GGCTTTTTCCTGGATATGGGCAGAAAGCTCTGTGCCGAACAGGGCGCCGA
TGCCGTTGCACTTGCCGGGACTGATCTGTTTCTTGTTTTCGACGGGCTCG
AAACCGGATTTCCGGTTGTTGATTGCGCGAGAATTCATGTCGATGCCCTG
GTCGCGGCATCGACATAG
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