mRNA_M-pyrifera_M_contig121146.4349.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121146.4349.1
Unique NamemRNA_M-pyrifera_M_contig121146.4349.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A841HMV5_9GAMM (Putative oxidoreductase n=1 Tax=Povalibacter uvarum TaxID=732238 RepID=A0A841HMV5_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 2.620e-39
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLTRQR 318
            WD+T FLF EEYRVPLL P LAAV GTAGELLF  L+  G+CGRLSA+GL AVN +AV +Y+HVLL  GFEAA+AQH LWG ML+V+++YGPG+ S+D +++  R
Sbjct:   47 WDSTQFLFREEYRVPLLPPDLAAVVGTAGELLFPLLLIFGICGRLSALGLQAVNVLAVVSYSHVLLQEGFEAAIAQHYLWGFMLLVLMVYGPGRWSMDGVVSDHR 151          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A6L8BDB8_9PROT (DoxX family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L8BDB8_9PROT)

HSP 1 Score: 132 bits (332), Expect = 2.390e-37
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 SWDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLTRQR 318
            SWD+TLFLF  EYRVPLLSP LAAV GT GELLF  ++ VGL GRL A+GLS VN +AV +YAHV+ SAGFE  +  H +WG+ML+ ++++GPG++S+D+L+ R R
Sbjct:   46 SWDSTLFLFEHEYRVPLLSPWLAAVLGTVGELLFPLMLFVGLAGRLGALGLSVVNVVAVISYAHVIFSAGFENTVNDHWIWGLMLLAVMVFGPGKLSLDYLINRYR 151          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A521WBG7_9GAMM (DoxX family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521WBG7_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 4.150e-37
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLL 306
            W+TT FLF EEY VPLL+P  AAV GTAGEL+F  L+ +GL GRL+A+GLS VN +AV AYAHVLL  GFEAAL QH LWG+ML+V+ ++GPG++S D  L
Sbjct:   44 WETTRFLFQEEYHVPLLAPAAAAVAGTAGELVFPVLLVLGLFGRLAAIGLSVVNGVAVLAYAHVLLQDGFEAALGQHCLWGLMLLVVAVFGPGRLSFDRWL 144          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A524KC94_9GAMM (DoxX family protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524KC94_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 9.690e-37
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVD 297
            W+TTLFLF EEY  P+LSP LAA+ GTAGEL+F  L+  GL GR +AVGL AVN MAV AYAHVLL+ GFEAAL QH LWG ML+++ +YGPG++S+D
Sbjct:   48 WETTLFLFQEEYHTPVLSPQLAAIVGTAGELIFPLLLIPGLFGRPAAVGLLAVNVMAVVAYAHVLLADGFEAALGQHYLWGFMLVILAVYGPGRLSLD 145          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A7C2NTP0_9GAMM (DoxX family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2NTP0_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 4.810e-36
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 SWDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLT 309
            SW  T+FLF  EY+VP+L+P LAAV GTAGEL+F  L+  GL GRLS+VGL AVN MAV +YAHVLL+ GFEAA+ QH LWG  L+V+ ++GPG++S+D  LT
Sbjct:   47 SWQNTVFLFRNEYQVPVLTPYLAAVAGTAGELVFPVLLIAGLAGRLSSVGLFAVNVMAVVSYAHVLLTEGFEAAVGQHYLWGFALLVLAVFGPGRLSLDRALT 149          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A829YDE9_9GAMM (Uncharacterized protein n=3 Tax=Steroidobacter TaxID=469322 RepID=A0A829YDE9_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 1.120e-35
Identity = 64/105 (60.95%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLTRQR 318
            W+ T+ LF  EYRVPLLSP LAA+ GTAGEL+F  L+ +GL GR+SA+GL AVNA+AV +YAHVL   GF AA+ QH LWG +L+V+ +YGPG  S+DH L R+R
Sbjct:   47 WEQTVALFEYEYRVPLLSPQLAAIAGTAGELVFPTLLMLGLFGRISALGLQAVNALAVISYAHVLFQEGFAAAIGQHYLWGYILLVLTVYGPGAWSLDHQLRRRR 151          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: UPI000E3218F8 (DoxX family protein n=1 Tax=Steroidobacter cummioxidans TaxID=1803913 RepID=UPI000E3218F8)

HSP 1 Score: 128 bits (321), Expect = 1.120e-35
Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLTRQR 318
            WD+TL LF  EYRVPLLSP LAA+ GTAGEL+F  L+ +GL GR+SA+GL AVN +AV +YAHVLL  GF AA+ QH LWG +L+V+ +YGPG  S+DH L  +R
Sbjct:   47 WDSTLALFEYEYRVPLLSPHLAAIVGTAGELVFPTLLILGLFGRISALGLQAVNVLAVVSYAHVLLQDGFAAAIGQHYLWGYILLVLTVYGPGAWSLDHQLRGRR 151          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: F8UI89_9ZZZZ (DoxX (Fragment) n=1 Tax=uncultured microorganism TaxID=358574 RepID=F8UI89_9ZZZZ)

HSP 1 Score: 125 bits (314), Expect = 2.770e-35
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   16 LFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLT-RQRT 321
            LFLF EEYRVPLLSP LAA+ GTAGEL+F  L+ +GL  R +A+GLSAVN +AV +YAHVLL++GFEAAL QH+LWG ML+V+ I+GPG  S D L+  R RT
Sbjct:    1 LFLFQEEYRVPLLSPPLAALAGTAGELVFPVLLGLGLFSRFAALGLSAVNVLAVVSYAHVLLASGFEAALGQHILWGFMLLVLAIHGPGPWSADGLIAGRART 103          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: UPI0019344716 (DoxX family protein n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019344716)

HSP 1 Score: 125 bits (314), Expect = 1.220e-34
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLLTRQR 318
            WD+TL LF  EYRVPLL+P LAA+ GTAGEL+F  L+ +GL GR+SA+GL AVN +AV +YAHVL   GF AA+ QH LWG +L+V+  YGPG  S+DH L  +R
Sbjct:   47 WDSTLALFEYEYRVPLLTPQLAAIAGTAGELVFPTLLILGLFGRISALGLQAVNVLAVVSYAHVLYQEGFAAAVGQHYLWGFILLVLTFYGPGVWSLDHWLNHKR 151          
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Match: A0A3N5L9U9_9GAMM (DoxX family protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5L9U9_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 1.080e-32
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 WDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVGLSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDHLL 306
            W+TT FLF EEY  PLL P +AA+ GTAGEL+F  L+ VGL  R +A GL AVN +AV +Y+HVLL+ GFEAAL QH LWG ML+V+++ GPG+ ++D +L
Sbjct:   45 WETTRFLFEEEYHTPLLPPLVAAIAGTAGELVFPVLLIVGLLSRYAAAGLFAVNVLAVVSYSHVLLTEGFEAALGQHYLWGFMLLVVIVMGPGRWALDAML 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121146.4349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A841HMV5_9GAMM2.620e-3964.76Putative oxidoreductase n=1 Tax=Povalibacter uvaru... [more]
A0A6L8BDB8_9PROT2.390e-3760.38DoxX family protein n=1 Tax=Proteobacteria bacteri... [more]
A0A521WBG7_9GAMM4.150e-3764.36DoxX family protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A524KC94_9GAMM9.690e-3766.33DoxX family protein n=1 Tax=Chromatiales bacterium... [more]
A0A7C2NTP0_9GAMM4.810e-3662.14DoxX family protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A829YDE9_9GAMM1.120e-3560.95Uncharacterized protein n=3 Tax=Steroidobacter Tax... [more]
UPI000E3218F81.120e-3561.90DoxX family protein n=1 Tax=Steroidobacter cummiox... [more]
F8UI89_9ZZZZ2.770e-3565.05DoxX (Fragment) n=1 Tax=uncultured microorganism T... [more]
UPI00193447161.220e-3460.00DoxX family protein n=1 Tax=Steroidobacter gossypi... [more]
A0A3N5L9U9_9GAMM1.080e-3258.42DoxX family protein n=1 Tax=Xanthomonadales bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121146contigM-pyrifera_M_contig121146:214..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.7
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog1000565.METUNv1_03434
KEGG koko:K15977
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DoxX
EggNOG OGs1N1VA@1224,2KZF6@206389,2VU9I@28216,COG2259@1,COG2259@2
COG Functional cat.S
Best tax levelRhodocyclales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.6638398-CDS-M-pyrifera_M_contig121146:213..5341622815730.6638398-CDS-M-pyrifera_M_contig121146:213..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121146 214..534 -
1692277542.6022024-CDS-M-pyrifera_M_contig121146:213..5341692277542.6022024-CDS-M-pyrifera_M_contig121146:213..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121146 214..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121146.4349.1prot_M-pyrifera_M_contig121146.4349.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121146 214..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121146.4349.1

>prot_M-pyrifera_M_contig121146.4349.1 ID=prot_M-pyrifera_M_contig121146.4349.1|Name=mRNA_M-pyrifera_M_contig121146.4349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
SWDTTLFLFAEEYRVPLLSPTLAAVTGTAGELLFSALVAVGLCGRLSAVG
LSAVNAMAVYAYAHVLLSAGFEAALAQHVLWGMMLIVIVIYGPGQISVDH
LLTRQRT
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mRNA from alignment at M-pyrifera_M_contig121146:214..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121146.4349.1 ID=mRNA_M-pyrifera_M_contig121146.4349.1|Name=mRNA_M-pyrifera_M_contig121146.4349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig121146:214..534- (Macrocystis pyrifera P11B4 male)
TCGTGGGACACGACGCTATTCCTGTTCGCAGAGGAATATCGGGTGCCGCT GCTTTCCCCGACATTGGCTGCCGTCACCGGTACTGCGGGCGAACTGCTGT TCTCTGCGCTCGTGGCCGTCGGTCTGTGCGGTCGTCTGAGCGCAGTCGGC CTGTCGGCGGTCAACGCCATGGCCGTCTACGCCTACGCGCATGTATTACT CAGTGCGGGGTTCGAGGCGGCTCTCGCGCAACATGTACTGTGGGGAATGA TGTTGATCGTCATCGTGATCTACGGCCCCGGGCAGATCTCGGTCGATCAC CTTCTCACGCGTCAGCGTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121146:214..534-

>mRNA_M-pyrifera_M_contig121146.4349.1 ID=mRNA_M-pyrifera_M_contig121146.4349.1|Name=mRNA_M-pyrifera_M_contig121146.4349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig121146:214..534- (Macrocystis pyrifera P11B4 male)
TCGTGGGACACGACGCTATTCCTGTTCGCAGAGGAATATCGGGTGCCGCT
GCTTTCCCCGACATTGGCTGCCGTCACCGGTACTGCGGGCGAACTGCTGT
TCTCTGCGCTCGTGGCCGTCGGTCTGTGCGGTCGTCTGAGCGCAGTCGGC
CTGTCGGCGGTCAACGCCATGGCCGTCTACGCCTACGCGCATGTATTACT
CAGTGCGGGGTTCGAGGCGGCTCTCGCGCAACATGTACTGTGGGGAATGA
TGTTGATCGTCATCGTGATCTACGGCCCCGGGCAGATCTCGGTCGATCAC
CTTCTCACGCGTCAGCGTACGTCGTGGGACACGACGCTATTCCTGTTCGC
AGAGGAATATCGGGTGCCGCTGCTTTCCCCGACATTGGCTGCCGTCACCG
GTACTGCGGGCGAACTGCTGTTCTCTGCGCTCGTGGCCGTCGGTCTGTGC
GGTCGTCTGAGCGCAGTCGGCCTGTCGGCGGTCAACGCCATGGCCGTCTA
CGCCTACGCGCATGTATTACTCAGTGCGGGGTTCGAGGCGGCTCTCGCGC
AACATGTACTGTGGGGAATGATGTTGATCGTCATCGTGATCTACGGCCCC
GGGCAGATCTCGGTCGATCACCTTCTCACGCGTCAGCGTACG
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