mRNA_M-pyrifera_M_contig121019.4326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121019.4326.1
Unique NamemRNA_M-pyrifera_M_contig121019.4326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A2D8GIJ1_9ACTN (Aminotransferase n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GIJ1_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 9.010e-31
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISAL 300
            I +R+Q +++ LR RL  +VP A VRD+GR RCGIVTFSL   DL  V A LR  GINVSIVPPASAL+DT +RDLPP++RAS+H YNT  E+D LI+ L
Sbjct:  301 IATRVQGLAETLRGRLTDDVPQATVRDLGRERCGIVTFSLDGADLAAVHAALRDAGINVSIVPPASALIDTRKRDLPPMIRASVHYYNTEAEIDQLITEL 400          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: UPI00142302BC (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI00142302BC)

HSP 1 Score: 95.5 bits (236), Expect = 4.720e-21
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALA 303
            I  R+Q +++ LR RL AE+P   VRD+GR RCG+VTF+    +   +   LRA+GINVS+  PAS  LD   R+LPP++RAS+H YNT +E++     LA
Sbjct:  289 IRDRVQRLAERLRHRL-AELPGITVRDLGRTRCGLVTFTSSLMEADEIHRHLRARGINVSVTTPASTRLDAEARNLPPMVRASVHYYNTENEIERFCDVLA 388          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A2S6TJD8_9PROT (Putative cysteine desulfurase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin2 TaxID=2013075 RepID=A0A2S6TJD8_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 6.600e-21
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   10 RIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALAQPAP 315
            RI  ++  LR+ L A++   + RD+G  RCGIV F++GD     VK +L  +GINVS+  P+S L+D + RDLPP++RAS+H YN+ +EVD L++ L+  AP
Sbjct:  292 RINALATRLRSGL-ADIGSVQSRDIGAERCGIVAFTVGDLPSAAVKDELAVRGINVSVSGPSSTLIDAMRRDLPPIVRASVHYYNSEEEVDTLLNVLSDIAP 392          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: UPI001AEC2723 (Aminotransferase class V-fold PLP-dependent enzyme n=2 Tax=Microbispora oryzae TaxID=2806554 RepID=UPI001AEC2723)

HSP 1 Score: 91.3 bits (225), Expect = 1.630e-19
Identity = 52/100 (52.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISAL 300
            IE RI  + + LR RL A VP   V D G  RCGIVTF++   D   V A LR +GINVS+  P SA  D   R LPP++RAS+H YNT DE+D L +AL
Sbjct:  289 IEERITGLGEGLRERLRA-VPGVSVHDQGTRRCGIVTFTVAGHDSADVVALLRERGINVSVSRPGSARWDFEARGLPPMVRASVHYYNTEDELDRLCAAL 387          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A1Z9SPS4_9PROT (Aminotransferase n=1 Tax=Rhodospirillaceae bacterium TMED256 TaxID=1986865 RepID=A0A1Z9SPS4_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 4.550e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   10 RIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALA 303
            R+Q ++  LR  L + +P  EVRD+GRV+CGIVTF+L D D   +KA L  + INVS+  P+S LLD   R+LPP++RAS+H YN   E+  L+ A++
Sbjct:  290 RVQVLAGTLRDGLSS-IPGVEVRDIGRVQCGIVTFTLEDVDALDIKAALATRRINVSVSNPSSTLLDASRRNLPPVVRASVHYYNDDAEIARLLEAIS 386          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A848VR88_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VR88_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 6.080e-19
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALA 303
            I SR+  ++  LR+ L  E+PD  V D G V+ G VTFS   RD   +K+ L A+GIN S+  P+ ALLD + R LP ++RAS+H YNT +E++AL+ AL+
Sbjct:  287 IRSRVDGLAGTLRSAL-REIPDITVHDSGLVKSGTVTFSHRKRDATEIKSALLAQGINTSVAVPSGALLDALNRGLPDMVRASVHYYNTVEEIEALVEALS 386          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A2V6WA42_9BACT (Aminotransferase (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6WA42_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 9.170e-19
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 SRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALAQPA 312
            +R+Q ++ ALRARL  EVP   V D+G +R GIV+F++ D D   VKA LRA  INV++ P    LLD   R L  ++RAS+H YNT +E+D L++ +A+ A
Sbjct:   15 ARVQMLAAALRARL-TEVPGVGVHDLGPMRGGIVSFTVRDVDAARVKAALRAVRINVTVSPARGTLLDMRARGLREVVRASVHYYNTDEEIDRLVAEVARLA 115          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A538MPF8_9ACTN (Aminotransferase class V-fold PLP-dependent enzyme n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538MPF8_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-18
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   10 RIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALI 291
            R+  + D LRARL  EV    VRD+G VRCGIVTF+L   +   +K  L  + INV++ PP+S LLD+  R LP L+RAS+H YNT +E+D L+
Sbjct:  292 RVVALGDNLRARL-GEVEGVTVRDLGAVRCGIVTFTLDGVEASELKDRLARERINVTVSPPSSTLLDSTARSLPELVRASVHYYNTDEEIDRLV 384          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A192IGW0_9HYPH (Aminotransferase class V n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IGW0_9HYPH)

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-18
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISALAQ 306
            IE+R+ E++  LR RLD  +    VRD+GR RCGIVTF+        V++ L A+GIN+S+    S L+D  +R+LP L+RAS+H YNT +EVD  + A+A+
Sbjct:  293 IEARVTELARVLRERLDG-IAGVTVRDLGRRRCGIVTFTHDSMPAGEVRSTLGAQGINLSVSDAGSTLIDMTKRNLPDLVRASVHYYNTLEEVDRFVEAVAR 393          
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Match: A0A512DM57_9PROT (Aminotransferase class V n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DM57_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 1.570e-18
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   10 RIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKADLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISAL 300
            R++ + D LR+R+ A +P   VRD+G VRCGIVTF+ G R    +KA L  +GINVS+   AS LLD   R L  ++RAS+H YNT DE+D L+ AL
Sbjct:  293 RVRNLGDLLRSRI-APLPGYTVRDLGEVRCGIVTFT-GPRPPAEIKALLAEQGINVSVTKAASTLLDMNARGLTEMVRASVHYYNTEDEIDRLVEAL 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121019.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8GIJ1_9ACTN9.010e-3162.00Aminotransferase n=7 Tax=Acidimicrobiaceae bacteri... [more]
UPI00142302BC4.720e-2147.52aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A2S6TJD8_9PROT6.600e-2146.08Putative cysteine desulfurase n=1 Tax=Alphaproteob... [more]
UPI001AEC27231.630e-1952.00Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A1Z9SPS4_9PROT4.550e-1947.96Aminotransferase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A848VR88_9BACT6.080e-1946.53Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A2V6WA42_9BACT9.170e-1947.06Aminotransferase (Fragment) n=1 Tax=Candidatus Rok... [more]
A0A538MPF8_9ACTN1.180e-1850.00Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A192IGW0_9HYPH1.200e-1846.08Aminotransferase class V n=2 Tax=Alphaproteobacter... [more]
A0A512DM57_9PROT1.570e-1850.52Aminotransferase class V n=1 Tax=Skermanella aerol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121019contigM-pyrifera_M_contig121019:214..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.1
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog309807.SRU_1268
Preferred namesufS
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DegT/DnrJ/EryC1/StrS aminotransferase family
EggNOG OGs1FJUJ@1100069,4NJ4E@976,COG0520@1,COG0520@2
COG Functional cat.E
Best tax levelBacteroidetes Order II. Incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.4661953-CDS-M-pyrifera_M_contig121019:213..5311622815729.4661953-CDS-M-pyrifera_M_contig121019:213..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121019 214..531 -
1692277542.0116413-CDS-M-pyrifera_M_contig121019:213..5311692277542.0116413-CDS-M-pyrifera_M_contig121019:213..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121019 214..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121019.4326.1prot_M-pyrifera_M_contig121019.4326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121019 214..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121019.4326.1

>prot_M-pyrifera_M_contig121019.4326.1 ID=prot_M-pyrifera_M_contig121019.4326.1|Name=mRNA_M-pyrifera_M_contig121019.4326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
IESRIQEVSDALRARLDAEVPDAEVRDMGRVRCGIVTFSLGDRDLPTVKA
DLRAKGINVSIVPPASALLDTVERDLPPLLRASLHIYNTHDEVDALISAL
AQPAP*
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mRNA from alignment at M-pyrifera_M_contig121019:214..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121019.4326.1 ID=mRNA_M-pyrifera_M_contig121019.4326.1|Name=mRNA_M-pyrifera_M_contig121019.4326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig121019:214..531- (Macrocystis pyrifera P11B4 male)
ATCGAGTCCCGCATCCAGGAGGTGTCCGACGCGCTGCGGGCGCGGCTCGA CGCCGAGGTGCCCGACGCCGAAGTCCGCGACATGGGTCGGGTCCGCTGCG GCATCGTCACGTTCTCACTCGGCGATCGCGATCTGCCCACGGTGAAGGCC GACCTGCGGGCCAAGGGCATCAATGTGAGCATCGTGCCCCCGGCGAGCGC GCTGCTCGACACGGTCGAACGAGACCTGCCCCCGCTCCTGCGGGCGTCGT TGCACATCTACAACACCCACGACGAGGTGGATGCGCTGATCAGCGCGCTG GCTCAGCCCGCGCCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121019:214..531-

>mRNA_M-pyrifera_M_contig121019.4326.1 ID=mRNA_M-pyrifera_M_contig121019.4326.1|Name=mRNA_M-pyrifera_M_contig121019.4326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig121019:214..531- (Macrocystis pyrifera P11B4 male)
ATCGAGTCCCGCATCCAGGAGGTGTCCGACGCGCTGCGGGCGCGGCTCGA
CGCCGAGGTGCCCGACGCCGAAGTCCGCGACATGGGTCGGGTCCGCTGCG
GCATCGTCACGTTCTCACTCGGCGATCGCGATCTGCCCACGGTGAAGGCC
GACCTGCGGGCCAAGGGCATCAATGTGAGCATCGTGCCCCCGGCGAGCGC
GCTGCTCGACACGGTCGAACGAGACCTGCCCCCGCTCCTGCGGGCGTCGT
TGCACATCTACAACACCCACGACGAGGTGGATGCGCTGATCAGCGCGCTG
GCTCAGCCCGCGCCGTAGATCGAGTCCCGCATCCAGGAGGTGTCCGACGC
GCTGCGGGCGCGGCTCGACGCCGAGGTGCCCGACGCCGAAGTCCGCGACA
TGGGTCGGGTCCGCTGCGGCATCGTCACGTTCTCACTCGGCGATCGCGAT
CTGCCCACGGTGAAGGCCGACCTGCGGGCCAAGGGCATCAATGTGAGCAT
CGTGCCCCCGGCGAGCGCGCTGCTCGACACGGTCGAACGAGACCTGCCCC
CGCTCCTGCGGGCGTCGTTGCACATCTACAACACCCACGACGAGGTGGAT
GCGCTGATCAGCGCGCTGGCTCAGCCCGCGCCGTAG
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