mRNA_M-pyrifera_M_contig120958.4308.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A1W0A5Z5_9STRA (UV excision repair protein RAD23 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Z5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.740e-17 Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 1
Query: 70 LARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGM-TPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQML 513
L LR HP FD LR ++ NP+ALP +L +IG P+LL+LI+ ++ +FVRM+N+ + + M GGM TP QL Q+ MGM+P+QL F QM+++ PPEA+QQM+
Sbjct: 140 LEALRNHPQFDALRRLIQANPAALPTVLQQIGNQSPELLRLIHQNQEQFVRMLNEPITETSPS-------------------QQGGFGDIDDGMGGGMPTPQQLQQLMASLSPEQQAQMAAQMGMTPQQLQQFSQMLSQMPPEAVQQMM 269
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A8J2SQ80_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ80_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 6.750e-16 Identity = 55/158 (34.81%), Postives = 74/158 (46.84%), Query Frame = 1
Query: 67 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGG--MTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
PLA LR+HP FDELR T++ NP++L +L +G DP LLQ I ++AEF+ MMN+ +APA GA GG + AQ A+ +G++PEQ F Q M P E L+Q+LG G G
Sbjct: 178 PLAVLRSHPQFDELRRTIQANPASLQQVLQGLGREDPQLLQTIKDNQAEFLAMMNEPVQEAPAMGA------------------------------GGDDLDAAQFARAMQSISPQQRAQLAATIGLTPEQFEQFSQQMQNMPREQLRQLLGALGGGG 305
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S1FMD0_9STRA (UV excision repair protein RAD23 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMD0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 7.220e-15 Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query: 49 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND---SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
G+ G PLA LR+HP FD+LR V+ NP +L A+L++IG P+LLQ IN ++A F+ MMN+ +++ PAA G PAQ++Q+ MG++PEQL A + M++ P + QQ + A G G
Sbjct: 241 GSGSGTPLAALRSHPQFDDLRRLVQNNPQSLQAVLAQIGQQSPELLQEINGNQAAFIEMMNEPVAANSTNPAAAPPRPNIPAGGPPTGMLENL------------GMADPAQMSQLLASLSPNELQDMATMMGLTPEQLRATLSMISNMPQDQFQQQMMQALGQG 393
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A2R5GGA8_9STRA (UV excision repair protein RAD23-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGA8_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.560e-14 Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 1
Query: 58 GGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDS-SADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAG 528
GGGPLA LR HP F+ LR V+ NP+AL +L ++G+TDPDLL+ INA++AEFV +MN+ DA XXXXXXXXXXXX XXXXXXXXXX P L Q+ MG+ PEQL A QM PP+A+ Q++ G G
Sbjct: 277 GGGPLAALRQHPDFNNLRRLVQNNPAALGTVLQQLGSTDPDLLEAINANRAEFVSIMNEPIDEDASXXXXXXXXXXXXXXXXSGGAPAXXXXXXXXXXGPDVQQLMGLLQLMQQMPEEQRAQLATQMGVPPEQLQAITQM----PPQAMAQLMQGMMG 430
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2R650_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R650_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.340e-14 Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 4 PPPAASAPGASAAPA------GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAA 258
PP A APGA A PA GA G G LA+LR HP F+ELR V++NP+AL ++L +IG P LL+ I A+ AEF+RM+N+ A APAA
Sbjct: 201 PPAGAPAPGAGATPAXXXXTSGAGGPGGLAQLRNHPQFNELRRLVQSNPAALESVLQQIGAQSPQLLEEIQANTAEFLRMLNEPVAAAPAA 291
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: K0T4F8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4F8_THAOC) HSP 1 Score: 76.6 bits (187), Expect = 4.090e-13 Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 67 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAG 261
PLA LR HP FD LR V++NP+AL +L++IG P+LLQ INA++ EF+ MMN+ A+APA G
Sbjct: 302 PLAALRNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2W866_9STRA (UV excision repair protein RAD23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W866_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.740e-12 Identity = 59/167 (35.33%), Postives = 75/167 (44.91%), Query Frame = 1
Query: 52 AAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-----------SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGG 519
AAGG PLA LR HP F+ LR V+ NP AL +L +IG +P LL+ IN ++ EFVR+MN+ S+ADA AA A M P Q A++ MG+ PEQL A QMM P +A QM+ G
Sbjct: 201 AAGGEPLAALRQHPQFNNLRRVVQNNPGALSTVLQQIGQGNPQLLEEINNNREEFVRIMNEPLEEGTGGNTPSAADAAAAIAGSGGMPAGVPHPEEFLAVLTAVQQ--------MPPDQRARVAQA------------MGVPPEQLQAITQMMQNMPAQARAQMMEG 347
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: F0YBM6_AURAN (UV excision repair protein RAD23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM6_AURAN) HSP 1 Score: 73.2 bits (178), Expect = 5.080e-12 Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 55 AGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND 234
AG PLA LRAHP FD+LR T++ NP AL +L+ IG P+LL LI+A++AEF++MMN+
Sbjct: 195 AGASPLATLRAHPQFDDLRRTIQANPGALQQVLAGIGRDSPELLALIHANQAEFLQMMNE 254
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A6S8CF64_9STRA (UV excision repair protein RAD23 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CF64_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 8.380e-12 Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 1
Query: 49 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
G A P+A +RAHP F E+R TV+ NP++L +L ++G TDP LLQLI+ ++A F+ +N+ SSA + A XXXXXXXX +TP Q AQ+ +G++P+QL F + M P + L+Q+LG A G
Sbjct: 187 GIASNDPIATIRAHPRFAEIRQTVQQNPASLQTMLQQLGQTDPQLLQLIHQNQAAFLAAVNEPSSAVSGIANTGDGDAEGGXXXXXXXXNDAGFDEQAFARAMASITPQQRAQVAAT------------VGLTPDQLEQFARQMQSMPRDQLRQLLGAFAAGG 337
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 5.010e-11 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 58 GGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAG 261
G PLA LR HP F ELR V++NP+ALP I+ IG P+LL +INAH FV++MN + D G
Sbjct: 85 GANPLAALRYHPQFLELRELVQSNPAALPEIIQGIGEQSPELLNMINAHPQAFVQLMNSTGDDLGMEG 152 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120958.4308.1 >prot_M-pyrifera_M_contig120958.4308.1 ID=prot_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp APPPAASAPGASAAPAGAAGGGPLARLRAHPLFDELRTTVRTNPSALPAIback to top mRNA from alignment at M-pyrifera_M_contig120958:2..535- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120958.4308.1 ID=mRNA_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig120958:2..535- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120958:2..535- >mRNA_M-pyrifera_M_contig120958.4308.1 ID=mRNA_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig120958:2..535- (Macrocystis pyrifera P11B4 male)back to top |