mRNA_M-pyrifera_M_contig120958.4308.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120958.4308.1
Unique NamemRNA_M-pyrifera_M_contig120958.4308.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A1W0A5Z5_9STRA (UV excision repair protein RAD23 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Z5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.740e-17
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   70 LARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGM-TPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQML 513
            L  LR HP FD LR  ++ NP+ALP +L +IG   P+LL+LI+ ++ +FVRM+N+   +   +                              M GGM TP QL Q+               MGM+P+QL  F QM+++ PPEA+QQM+
Sbjct:  140 LEALRNHPQFDALRRLIQANPAALPTVLQQIGNQSPELLRLIHQNQEQFVRMLNEPITETSPS-------------------QQGGFGDIDDGMGGGMPTPQQLQQLMASLSPEQQAQMAAQMGMTPQQLQQFSQMLSQMPPEAVQQMM 269          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A8J2SQ80_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ80_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.750e-16
Identity = 55/158 (34.81%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   67 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGG--MTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
            PLA LR+HP FDELR T++ NP++L  +L  +G  DP LLQ I  ++AEF+ MMN+   +APA GA                              GG  +  AQ A+                +G++PEQ   F Q M   P E L+Q+LG   G G
Sbjct:  178 PLAVLRSHPQFDELRRTIQANPASLQQVLQGLGREDPQLLQTIKDNQAEFLAMMNEPVQEAPAMGA------------------------------GGDDLDAAQFARAMQSISPQQRAQLAATIGLTPEQFEQFSQQMQNMPREQLRQLLGALGGGG 305          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S1FMD0_9STRA (UV excision repair protein RAD23 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMD0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.220e-15
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   49 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND---SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
            G+  G PLA LR+HP FD+LR  V+ NP +L A+L++IG   P+LLQ IN ++A F+ MMN+   +++  PAA                                G   PAQ++Q+               MG++PEQL A + M++  P +  QQ +  A G G
Sbjct:  241 GSGSGTPLAALRSHPQFDDLRRLVQNNPQSLQAVLAQIGQQSPELLQEINGNQAAFIEMMNEPVAANSTNPAAAPPRPNIPAGGPPTGMLENL------------GMADPAQMSQLLASLSPNELQDMATMMGLTPEQLRATLSMISNMPQDQFQQQMMQALGQG 393          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A2R5GGA8_9STRA (UV excision repair protein RAD23-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGA8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.560e-14
Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   58 GGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDS-SADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAG 528
            GGGPLA LR HP F+ LR  V+ NP+AL  +L ++G+TDPDLL+ INA++AEFV +MN+    DA     XXXXXXXXXXXX      XXXXXXXXXX P       L Q+               MG+ PEQL A  QM    PP+A+ Q++ G  G
Sbjct:  277 GGGPLAALRQHPDFNNLRRLVQNNPAALGTVLQQLGSTDPDLLEAINANRAEFVSIMNEPIDEDASXXXXXXXXXXXXXXXXSGGAPAXXXXXXXXXXGPDVQQLMGLLQLMQQMPEEQRAQLATQMGVPPEQLQAITQM----PPQAMAQLMQGMMG 430          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2R650_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R650_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.340e-14
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    4 PPPAASAPGASAAPA------GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAA 258
            PP  A APGA A PA      GA G G LA+LR HP F+ELR  V++NP+AL ++L +IG   P LL+ I A+ AEF+RM+N+  A APAA
Sbjct:  201 PPAGAPAPGAGATPAXXXXTSGAGGPGGLAQLRNHPQFNELRRLVQSNPAALESVLQQIGAQSPQLLEEIQANTAEFLRMLNEPVAAAPAA 291          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: K0T4F8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4F8_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 4.090e-13
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   67 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAG 261
            PLA LR HP FD LR  V++NP+AL  +L++IG   P+LLQ INA++ EF+ MMN+  A+APA G
Sbjct:  302 PLAALRNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2W866_9STRA (UV excision repair protein RAD23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W866_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-12
Identity = 59/167 (35.33%), Postives = 75/167 (44.91%), Query Frame = 1
Query:   52 AAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-----------SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGG 519
            AAGG PLA LR HP F+ LR  V+ NP AL  +L +IG  +P LL+ IN ++ EFVR+MN+           S+ADA AA A                                M P Q A++               MG+ PEQL A  QMM   P +A  QM+ G
Sbjct:  201 AAGGEPLAALRQHPQFNNLRRVVQNNPGALSTVLQQIGQGNPQLLEEINNNREEFVRIMNEPLEEGTGGNTPSAADAAAAIAGSGGMPAGVPHPEEFLAVLTAVQQ--------MPPDQRARVAQA------------MGVPPEQLQAITQMMQNMPAQARAQMMEG 347          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: F0YBM6_AURAN (UV excision repair protein RAD23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM6_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 5.080e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   55 AGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND 234
            AG  PLA LRAHP FD+LR T++ NP AL  +L+ IG   P+LL LI+A++AEF++MMN+
Sbjct:  195 AGASPLATLRAHPQFDDLRRTIQANPGALQQVLAGIGRDSPELLALIHANQAEFLQMMNE 254          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A6S8CF64_9STRA (UV excision repair protein RAD23 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CF64_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.380e-12
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   49 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 534
            G A   P+A +RAHP F E+R TV+ NP++L  +L ++G TDP LLQLI+ ++A F+  +N+ SSA +  A          XXXXXXXX                +TP Q AQ+               +G++P+QL  F + M   P + L+Q+LG  A  G
Sbjct:  187 GIASNDPIATIRAHPRFAEIRQTVQQNPASLQTMLQQLGQTDPQLLQLIHQNQAAFLAAVNEPSSAVSGIANTGDGDAEGGXXXXXXXXNDAGFDEQAFARAMASITPQQRAQVAAT------------VGLTPDQLEQFARQMQSMPRDQLRQLLGAFAAGG 337          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.010e-11
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   58 GGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAG 261
            G  PLA LR HP F ELR  V++NP+ALP I+  IG   P+LL +INAH   FV++MN +  D    G
Sbjct:   85 GANPLAALRYHPQFLELRELVQSNPAALPEIIQGIGEQSPELLNMINAHPQAFVQLMNSTGDDLGMEG 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W0A5Z5_9STRA4.740e-1734.90UV excision repair protein RAD23 n=1 Tax=Thraustot... [more]
A0A8J2SQ80_9STRA6.750e-1634.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1FMD0_9STRA7.220e-1532.73UV excision repair protein RAD23 n=2 Tax=Corethron... [more]
A0A2R5GGA8_9STRA2.560e-1448.73UV excision repair protein RAD23-like n=1 Tax=Hond... [more]
A0A7S2R650_9STRA3.340e-1452.75Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
K0T4F8_THAOC4.090e-1355.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2W866_9STRA1.740e-1235.33UV excision repair protein RAD23 n=1 Tax=labyrinth... [more]
F0YBM6_AURAN5.080e-1256.67UV excision repair protein RAD23 n=1 Tax=Aureococc... [more]
A0A6S8CF64_9STRA8.380e-1236.20UV excision repair protein RAD23 n=1 Tax=Aureoumbr... [more]
A0A836CLA0_9STRA5.010e-1150.00UV excision repair protein RAD23 n=1 Tax=Tribonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120958contigM-pyrifera_M_contig120958:2..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog4792.ETI31946
Preferred nameRad23
KEGG koko:K10839,ko:K18180
KEGG Pathwayko03420,ko04141,ko04714,map03420,map04141,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0015630,GO:0016579,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031593,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045070,GO:0045732,GO:0045787,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140030,GO:1901360,GO:1901363,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903900,GO:1903902,GO:1990381,GO:2000058,GO:2000060
EggNOG free text desc.XPC-binding domain
EggNOG OGs3QAWY@4776,COG5272@1,KOG0011@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03051,ko03400
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.720854-CDS-M-pyrifera_M_contig120958:1..5351622815728.720854-CDS-M-pyrifera_M_contig120958:1..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120958 2..535 -
1692277541.6897533-CDS-M-pyrifera_M_contig120958:1..5351692277541.6897533-CDS-M-pyrifera_M_contig120958:1..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120958 2..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120958.4308.1prot_M-pyrifera_M_contig120958.4308.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120958 2..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120958.4308.1

>prot_M-pyrifera_M_contig120958.4308.1 ID=prot_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
APPPAASAPGASAAPAGAAGGGPLARLRAHPLFDELRTTVRTNPSALPAI
LSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAPGSPGAAGAAGA
PGAAGDMGGAGAGMGGMPGGMTPAQLAQMVGSMTPEQRAQLAASMGMSPE
QLGAFMQMMARAPPEALQQMLGGAAGAG
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mRNA from alignment at M-pyrifera_M_contig120958:2..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120958.4308.1 ID=mRNA_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig120958:2..535- (Macrocystis pyrifera P11B4 male)
GCGCCCCCGCCCGCTGCTTCTGCGCCTGGAGCAAGTGCAGCCCCCGCGGG GGCAGCTGGCGGCGGCCCGCTGGCCCGCCTCCGCGCGCACCCGCTGTTCG ACGAGCTGCGCACCACCGTGCGCACCAACCCGTCCGCCCTCCCCGCCATC CTCTCCCGCATCGGCACCACCGACCCCGACCTGCTGCAGCTCATCAACGC GCACAAGGCAGAGTTCGTGCGCATGATGAACGACTCGTCTGCTGACGCCC CCGCGGCTGGCGCTCCCGGGTCTCCCGGCGCGGCTGGCGCGGCCGGCGCT CCTGGTGCTGCGGGCGACATGGGTGGTGCAGGAGCTGGTATGGGCGGCAT GCCGGGCGGAATGACGCCGGCGCAGTTGGCGCAGATGGTCGGCTCCATGA CCCCGGAGCAGCGTGCGCAGCTGGCGGCCAGCATGGGCATGTCGCCGGAG CAGCTCGGGGCGTTCATGCAGATGATGGCGCGCGCGCCGCCGGAGGCGCT GCAGCAGATGCTGGGGGGAGCGGCGGGAGCCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120958:2..535-

>mRNA_M-pyrifera_M_contig120958.4308.1 ID=mRNA_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig120958:2..535- (Macrocystis pyrifera P11B4 male)
GCGCCCCCGCCCGCTGCTTCTGCGCCTGGAGCAAGTGCAGCCCCCGCGGG
GGCAGCTGGCGGCGGCCCGCTGGCCCGCCTCCGCGCGCACCCGCTGTTCG
ACGAGCTGCGCACCACCGTGCGCACCAACCCGTCCGCCCTCCCCGCCATC
CTCTCCCGCATCGGCACCACCGACCCCGACCTGCTGCAGCTCATCAACGC
GCACAAGGCAGAGTTCGTGCGCATGATGAACGACTCGTCTGCTGACGCCC
CCGCGGCTGGCGCTCCCGGGTCTCCCGGCGCGGCTGGCGCGGCCGGCGCT
CCTGGTGCTGCGGGCGACATGGGTGGTGCAGGAGCTGGTATGGGCGGCAT
GCCGGGCGGAATGACGCCGGCGCAGTTGGCGCAGATGGTCGGCTCCATGA
CCCCGGAGCAGCGTGCGCAGCTGGCGGCCAGCATGGGCATGTCGCCGGAG
CAGCTCGGGGCGTTCATGCAGATGATGGCGCGCGCGCCGCCGGAGGCGCT
GCAGCAGATGCTGGGGGGAGCGGCGGGAGCCGGAGCGCCCCCGCCCGCTG
CTTCTGCGCCTGGAGCAAGTGCAGCCCCCGCGGGGGCAGCTGGCGGCGGC
CCGCTGGCCCGCCTCCGCGCGCACCCGCTGTTCGACGAGCTGCGCACCAC
CGTGCGCACCAACCCGTCCGCCCTCCCCGCCATCCTCTCCCGCATCGGCA
CCACCGACCCCGACCTGCTGCAGCTCATCAACGCGCACAAGGCAGAGTTC
GTGCGCATGATGAACGACTCGTCTGCTGACGCCCCCGCGGCTGGCGCTCC
CGGGTCTCCCGGCGCGGCTGGCGCGGCCGGCGCTCCTGGTGCTGCGGGCG
ACATGGGTGGTGCAGGAGCTGGTATGGGCGGCATGCCGGGCGGAATGACG
CCGGCGCAGTTGGCGCAGATGGTCGGCTCCATGACCCCGGAGCAGCGTGC
GCAGCTGGCGGCCAGCATGGGCATGTCGCCGGAGCAGCTCGGGGCGTTCA
TGCAGATGATGGCGCGCGCGCCGCCGGAGGCGCTGCAGCAGATGCTGGGG
GGAGCGGCGGGAGCCGGA
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