mRNA_M-pyrifera_M_contig120559.4234.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120559.4234.1
Unique NamemRNA_M-pyrifera_M_contig120559.4234.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.150e-25
Identity = 54/134 (40.30%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    4 VVPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSV-CMTNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            VV   EF +GF +L +G KS+KL++A+++F E     GDG       + R+ +W++LR+F+T L+SV  ++ R+   ++Q + D  A +LT  +F+ A   D G +S+ EF  WY AGG++ +PWLELLD+ KW
Sbjct:  132 VVDFDEFLSGFSLLVQGSKSDKLALAFRMFDE----DGDGY------ISRLEMWKYLRAFLTMLMSVNTLSQRLPVTEVQTLVDKAAVELTKAVFSSADLDDDGRISYEEFGQWYNAGGFDIIPWLELLDLRKW 255          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.690e-23
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   19 EFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCM-TNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKWDA 408
            E  +GF +L  G KS KL+ A+ L  E     GD      ERL R  LWR+ RSF+TAL+++   ++ +S ++L R  DDGA   +A IFAE A      + F EFA WYT GG+   PWLELLD+ KW A
Sbjct: 1099 ELASGFSLLCAGSKSAKLAFAFGLHDE----DGD------ERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDIGKWVA 1219          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.290e-23
Identity = 58/129 (44.96%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   19 EFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCM-TNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            E  +GF +L  G KS KL+ A+ L  E     GD      ERL R  LWR+ RSF+TAL+++   ++ +S ++L R  DDGA   +A IFAE A      + F EFA WYT GG+   PWLELLD+ KW
Sbjct: 1087 ELASGFSLLCAGSKSAKLAFAFGLHDE----DGD------ERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDMGKW 1205          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S2FUE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FUE5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.760e-22
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    7 VPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCMTNR-MSPQQLQRVADDGATDLTARIFAEAA-----PSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            V  AE   GF +L  G KSEKL+VAW+L A +S   G  +     RL R  +WRFLR+++  ++ V  T R ++P +L   AD GA  + A +F +A       ++  S++F +FA WYT GGY+   W ELLD+NKW
Sbjct:  113 VNAAELAVGFTLLCAGNKSEKLAVAWELIAGSS--GGAQSLENPARLTRRGVWRFLRAYLKMIIGVSGTIRGLTPSELACAADRGAVWMAALVFKDAKGRTRHQANHKSITFDDFAVWYTFGGYQVASWFELLDLNKW 248          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S2FWU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FWU8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-21
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    7 VPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCMTNR-MSPQQLQRVADDGATDLTARIFAEAA-----PSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            V  AE   GF +L  G KSEKL+VAW+L A +S   G  +     RL R  +WRFLR+++  ++ V  T R ++P +L   AD GA  + A +F +A       ++  S++F +FA WYT GGY+   W ELLD+NKW
Sbjct:  113 VNAAELAVGFTLLCAGNKSEKLAVAWELIAGSS--GGAQSLENPARLTRRGVWRFLRAYLKMIIGVSGTIRGLTPSELACAADRGAVWMAALVFKDAKGRTRHQANHKSITFDDFAVWYTFGGYQVASWFELLDLNKW 248          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.000e-21
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    7 VPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCM-TNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            V + EF  GF +L  G KS KL+ A+ L  E     GDG      RL R  LWRFLR+F++ L+S+    + M   +L  + D+GA    A IF +   ++   + F E A WYT GGY   PWLELLD+ KW
Sbjct:   87 VDVLEFMGGFALLCAGNKSGKLAYAFDLLDE----DGDG------RLSRRGLWRFLRAFLSVLMSMSSKASSMEASELVDLIDNGAVWTAATIFEQCDLAEKNKIDFEELAAWYTEGGYRLSPWLELLDLKKW 209          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S0GD91_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD91_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.990e-19
Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 1
Query:   19 EFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCMTN-RMSPQQLQRVADDGATDLTARIFAEAAPSDSG----------SVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            E  +GF VL  G+KS+KL  A+ L  +      DG      RL R  LW++LRSF+T L+S+   +  M+   +    D  +T  TA++F   A  D G          SV F +FA+WYT GGY  +PWLELLD+ KW
Sbjct:  117 ELASGFTVLCGGRKSDKLEFAFDLIDDDK----DG------RLSRRGLWKYLRSFLTVLMSISSASANMTEGHIYSAIDSASTWATAQVFG--AEQDKGLGNNDNSSKRSVCFDDFAEWYTQGGYGSIPWLELLDLKKW 243          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S3Y3W7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W7_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 5.990e-19
Identity = 57/143 (39.86%), Postives = 75/143 (52.45%), Query Frame = 1
Query:    7 VPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCMTNRMSP-QQLQRVADDGATDLTARIF-------AEAAPS---DSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            V + EF  GF++   G KS KL+ A++L  E S             L R  +WRF RS ++ L ++C +    P ++LQ   DDGA   TAR F       A AAP    D   +SF + A WYT GGY+  PWLELLD+ KW
Sbjct:   38 VDVLEFIAGFVLFCAGSKSVKLAYAFELLDEQSLGY----------LTRRGVWRFFRSILSMLAALCSSLLDVPTEELQARVDDGAVWTTARAFSYRGPPAAAAAPERERDPNRLSFDDLAAWYTGGGYQVCPWLELLDLRKW 170          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S2RNN1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RNN1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.490e-19
Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    4 VVPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTAL--LSVCMTNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKWDA 408
            +VP ++ C+G +VLG+G KS+KL++AW LF       GD   T+  ++ + +  R+L SF+T    LS  +   +  ++   + D   ++ + +++ +   S   ++SF +FA WYT GG+E +PWLELL ++KW  
Sbjct: 1157 LVPFSDICSGLLVLGKGSKSDKLALAWGLF-------GD---TKTNKMNKANFSRYLASFLTIFFALSEEVCEGLPAKEGWDIVDQSISEFSEQVYEDLELSPRDTISFEDFATWYTEGGHEIIPWLELLCLDKWST 1283          
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Match: A0A7S2K2V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2V1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.330e-18
Identity = 57/132 (43.18%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    7 VPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLERVHLWRFLRSFVTALLSVCMTNRMSPQQLQRVADDGATDLTARIFAEAAPSDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKW 402
            VP  EF  GF VL  GKKS+KL  A+ LF             +G+ + R  +  +LRSFVT  L V  TN  S      + D  ++  T +IF + +   SG +SF EFA+WYT GGY  MPWLELLD+ KW
Sbjct:  568 VPAEEFACGFSVLCGGKKSDKLECAFDLF---------DRDHDGKLMLR-EVTLYLRSFVTIFLCVSNTNNHSGGIPFDIVDGASSWATKKIFDDLSLP-SGLLSFDEFANWYTQGGYGCMPWLELLDLRKW 688          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120559.4234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1G6W4_9STRA1.150e-2540.30Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6H5JYX4_9PHAE2.690e-2345.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUX5_ECTSI9.290e-2344.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FUE5_9STRA1.760e-2241.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FWU8_9STRA1.340e-2141.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XMH2_HETAK2.000e-2141.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0GD91_9STRA2.990e-1939.57Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S3Y3W7_HETAK5.990e-1939.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RNN1_9STRA7.490e-1933.58Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2K2V1_9STRA3.330e-1843.18Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120559contigM-pyrifera_M_contig120559:17..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D7FUX5
Hectar predicted targeting categoryother localisation
EggNOG OGs2CU92@1,2RK0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.0928266-CDS-M-pyrifera_M_contig120559:16..4271622815725.0928266-CDS-M-pyrifera_M_contig120559:16..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120559 17..427 +
1692277539.825888-CDS-M-pyrifera_M_contig120559:16..4271692277539.825888-CDS-M-pyrifera_M_contig120559:16..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120559 17..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120559.4234.1prot_M-pyrifera_M_contig120559.4234.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120559 17..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120559.4234.1

>prot_M-pyrifera_M_contig120559.4234.1 ID=prot_M-pyrifera_M_contig120559.4234.1|Name=mRNA_M-pyrifera_M_contig120559.4234.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
GVVPLAEFCTGFMVLGEGKKSEKLSVAWQLFAEASRASGDGTPTEGERLE
RVHLWRFLRSFVTALLSVCMTNRMSPQQLQRVADDGATDLTARIFAEAAP
SDSGSVSFAEFADWYTAGGYEHMPWLELLDVNKWDA*
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mRNA from alignment at M-pyrifera_M_contig120559:17..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120559.4234.1 ID=mRNA_M-pyrifera_M_contig120559.4234.1|Name=mRNA_M-pyrifera_M_contig120559.4234.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig120559:17..427+ (Macrocystis pyrifera P11B4 male)
GGCGTCGTGCCGCTCGCAGAGTTCTGCACCGGCTTCATGGTGCTGGGCGA GGGCAAGAAGAGCGAGAAGCTGTCGGTCGCGTGGCAGCTGTTTGCCGAGG CGTCGCGCGCGAGCGGCGACGGCACGCCGACCGAGGGAGAGCGACTGGAG CGCGTCCATCTCTGGCGCTTCCTCCGCTCCTTCGTCACCGCGCTCCTCTC CGTGTGCATGACCAACCGCATGAGCCCGCAGCAGCTGCAGCGCGTGGCGG ACGACGGCGCGACCGACCTGACGGCGCGCATCTTCGCCGAAGCGGCGCCG TCCGACTCTGGCTCCGTCTCCTTCGCCGAGTTCGCCGACTGGTACACCGC CGGCGGATACGAGCACATGCCGTGGCTGGAGCTGCTGGACGTGAACAAAT GGGACGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120559:17..427+

>mRNA_M-pyrifera_M_contig120559.4234.1 ID=mRNA_M-pyrifera_M_contig120559.4234.1|Name=mRNA_M-pyrifera_M_contig120559.4234.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig120559:17..427+ (Macrocystis pyrifera P11B4 male)
GGCGTCGTGCCGCTCGCAGAGTTCTGCACCGGCTTCATGGTGCTGGGCGA
GGGCAAGAAGAGCGAGAAGCTGTCGGTCGCGTGGCAGCTGTTTGCCGAGG
CGTCGCGCGCGAGCGGCGACGGCACGCCGACCGAGGGAGAGCGACTGGAG
CGCGTCCATCTCTGGCGCTTCCTCCGCTCCTTCGTCACCGCGCTCCTCTC
CGTGTGCATGACCAACCGCATGAGCCCGCAGCAGCTGCAGCGCGTGGCGG
ACGACGGCGCGACCGACCTGACGGCGCGCATCTTCGCCGAAGCGGCGCCG
TCCGACTCTGGCTCCGTCTCCTTCGCCGAGTTCGCCGACTGGTACACCGC
CGGCGGATACGAGCACATGCCGTGGCTGGAGCTGCTGGACGTGAACAAAT
GGGACGCGTAGGGCGTCGTGCCGCTCGCAGAGTTCTGCACCGGCTTCATG
GTGCTGGGCGAGGGCAAGAAGAGCGAGAAGCTGTCGGTCGCGTGGCAGCT
GTTTGCCGAGGCGTCGCGCGCGAGCGGCGACGGCACGCCGACCGAGGGAG
AGCGACTGGAGCGCGTCCATCTCTGGCGCTTCCTCCGCTCCTTCGTCACC
GCGCTCCTCTCCGTGTGCATGACCAACCGCATGAGCCCGCAGCAGCTGCA
GCGCGTGGCGGACGACGGCGCGACCGACCTGACGGCGCGCATCTTCGCCG
AAGCGGCGCCGTCCGACTCTGGCTCCGTCTCCTTCGCCGAGTTCGCCGAC
TGGTACACCGCCGGCGGATACGAGCACATGCCGTGGCTGGAGCTGCTGGA
CGTGAACAAATGGGACGCGTAG
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