mRNA_M-pyrifera_M_contig120378.4201.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120378.4201.1
Unique NamemRNA_M-pyrifera_M_contig120378.4201.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A3M6UV69_POCDA (Transmembrane ascorbate-dependent reductase CYB561 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UV69_POCDA)

HSP 1 Score: 59.7 bits (143), Expect = 5.770e-9
Identity = 24/65 (36.92%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSG 198
            +P++ ++H + G+ST++L+SCQL+FG V F  P++P  ++A  + +H   G+ +F MV+G+   G
Sbjct:  117 IPNLYSLHSWCGLSTIILFSCQLLFGFVSFLFPKLPDSLRAAYLKVHVFFGMFIFMMVIGTALIG 181          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A8J6FU19_MICOH (Plasma membrane ascorbate-dependent reductase CYBRD1 n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=A0A8J6FU19_MICOH)

HSP 1 Score: 60.1 bits (144), Expect = 6.960e-9
Identity = 23/68 (33.82%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SVPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            S+PH+ ++H ++G++ ++LY  QL+ G ++F +P  P  ++AV++P+H  +G++LF  V+ ++  G T
Sbjct:  210 SIPHMYSLHSWVGLTAVILYVLQLVLGFLIFLLPWAPPSLRAVIMPVHVYSGLLLFGTVIATVLMGIT 277          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A1U7Q329_MESAU (Plasma membrane ascorbate-dependent reductase CYBRD1 n=12 Tax=Cricetidae TaxID=337677 RepID=A0A1U7Q329_MESAU)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8
Identity = 23/68 (33.82%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SVPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            S+PH+ ++H ++G++ ++LY  QL+ G ++F +P  P  ++AV++P+H  +G++LF  V+ ++  G T
Sbjct:  110 SIPHMYSLHSWVGLTAVILYVQQLVLGFLIFLLPWAPLSLRAVVMPIHVYSGLLLFGTVIATVLMGVT 177          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A8C6RWD8_NANGA (Plasma membrane ascorbate-dependent reductase CYBRD1 n=1 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RWD8_NANGA)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-8
Identity = 23/67 (34.33%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            +PH+ ++H ++G++ ++LY  QL+ GL +F +P  P  ++AV++P+H  +G++LF  V+ ++  G T
Sbjct:  113 IPHMYSLHSWVGLTAVILYVLQLVLGLFIFLLPWAPLSLRAVVMPIHVYSGLLLFGTVIATVLMGVT 179          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A2B4SD89_STYPI (Transmembrane ascorbate-dependent reductase CYB561 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SD89_STYPI)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSG 198
            +P++ ++H + G+ T++L+SCQL+FG V F  P++P  ++AV + +H   GV +F M +G+   G
Sbjct:  117 IPNLYSLHSWCGLLTIILFSCQLLFGFVSFLFPKLPEGLRAVYLKVHVFFGVFIFMMAIGTALLG 181          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: CYBR1_MOUSE (Plasma membrane ascorbate-dependent reductase CYBRD1 n=11 Tax=Tetrapoda TaxID=32523 RepID=CYBR1_MOUSE)

HSP 1 Score: 58.2 bits (139), Expect = 2.820e-8
Identity = 24/67 (35.82%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            VPH+ ++H ++G++ L+LY  QL+ G  VF +P  P  ++A+++P+H  +G++LF  V+ ++  G T
Sbjct:  113 VPHMYSLHSWVGLTALILYIQQLVVGFFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVT 179          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A1I8AJR7_9BILA (Cytochrome b561 domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AJR7_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 4.440e-8
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSG 198
            +P++ ++H ++GIST+VL+  Q +FG + +  P +P + +A+ +P HR  G+ LF M LGS   G
Sbjct:  118 IPNLMSLHSWIGISTVVLFCLQFLFGFITYLKPGLPMQYRALFMPGHRLGGIALFVMALGSALMG 182          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A6J2WC06_CHACN (Plasma membrane ascorbate-dependent reductase CYBRD1 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WC06_CHACN)

HSP 1 Score: 57.0 bits (136), Expect = 7.000e-8
Identity = 22/67 (32.84%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    4 VPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            +P++ ++H ++G++ ++LYS QL+ GL+V+ +P  P  ++A ++PLH  +G+++F  V+ +   G T
Sbjct:  111 IPNMYSLHSWVGLAAVILYSLQLVLGLLVYLVPITPVYVRAALMPLHVYSGLVIFVSVIAAALMGIT 177          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: A0A250XXJ6_CASCN (Plasma membrane ascorbate-dependent reductase CYBRD1 n=2 Tax=Castor canadensis TaxID=51338 RepID=A0A250XXJ6_CASCN)

HSP 1 Score: 56.6 bits (135), Expect = 9.820e-8
Identity = 22/68 (32.35%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 SVPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            S+PH+ ++H ++G++ ++LY  QL+ G  +F +P  P  ++A+ +P+H  +G++LF  V+ ++  G T
Sbjct:  112 SIPHMYSLHSWVGLTVVILYVLQLLLGFFIFLLPWAPLSLRALAMPVHVYSGLLLFGTVIATVLMGVT 179          
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Match: UPI00112E805A (cytochrome b reductase 1 isoform X2 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112E805A)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-7
Identity = 20/68 (29.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SVPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRGTGVMLFCMVLGSITSGFT 204
            ++P++ ++H ++G++ ++LY  Q++FGL+V+ +P  P  ++A ++PLH+ +G+++F   + +   G T
Sbjct:   77 NIPNMYSMHSWVGLTAVILYGLQILFGLLVYLLPYAPMSVRAALLPLHKFSGLLIFGSGIATALMGIT 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120378.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M6UV69_POCDA5.770e-936.92Transmembrane ascorbate-dependent reductase CYB561... [more]
A0A8J6FU19_MICOH6.960e-933.82Plasma membrane ascorbate-dependent reductase CYBR... [more]
A0A1U7Q329_MESAU1.040e-833.82Plasma membrane ascorbate-dependent reductase CYBR... [more]
A0A8C6RWD8_NANGA1.060e-834.33Plasma membrane ascorbate-dependent reductase CYBR... [more]
A0A2B4SD89_STYPI2.110e-836.92Transmembrane ascorbate-dependent reductase CYB561... [more]
CYBR1_MOUSE2.820e-835.82Plasma membrane ascorbate-dependent reductase CYBR... [more]
A0A1I8AJR7_9BILA4.440e-838.46Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A6J2WC06_CHACN7.000e-832.84Plasma membrane ascorbate-dependent reductase CYBR... [more]
A0A250XXJ6_CASCN9.820e-832.35Plasma membrane ascorbate-dependent reductase CYBR... [more]
UPI00112E805A1.110e-729.41cytochrome b reductase 1 isoform X2 n=2 Tax=Rhinat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120378contigM-pyrifera_M_contig120378:51..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog6211.A0A068YDZ1
KEGG koko:K08360
KEGG TC5.B.2.1
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
EggNOG free text desc.Cytochrome b561
EggNOG OGs39VHP@33154,3BEJC@33208,3D2GH@33213,KOG1619@1,KOG1619@2759
EC1.16.5.1
COG Functional cat.C
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.1522083-CDS-M-pyrifera_M_contig120378:50..1191622815723.1522083-CDS-M-pyrifera_M_contig120378:50..119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120378 51..119 +
1692277538.744219-CDS-M-pyrifera_M_contig120378:50..1191692277538.744219-CDS-M-pyrifera_M_contig120378:50..119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120378 51..119 +
1622815723.1625128-CDS-M-pyrifera_M_contig120378:291..4351622815723.1625128-CDS-M-pyrifera_M_contig120378:291..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120378 292..435 +
1692277538.7544894-CDS-M-pyrifera_M_contig120378:291..4351692277538.7544894-CDS-M-pyrifera_M_contig120378:291..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120378 292..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120378.4201.1prot_M-pyrifera_M_contig120378.4201.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120378 51..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120378.4201.1

>prot_M-pyrifera_M_contig120378.4201.1 ID=prot_M-pyrifera_M_contig120378.4201.1|Name=mRNA_M-pyrifera_M_contig120378.4201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
SVPHIQAIHEYMGISTLVLYSCQLIFGLVVFAIPQIPAKIKAVMVPLHRG
TGVMLFCMVLGSITSGFTYFN
back to top

mRNA from alignment at M-pyrifera_M_contig120378:51..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120378.4201.1 ID=mRNA_M-pyrifera_M_contig120378.4201.1|Name=mRNA_M-pyrifera_M_contig120378.4201.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=385bp|location=Sequence derived from alignment at M-pyrifera_M_contig120378:51..435+ (Macrocystis pyrifera P11B4 male)
TCCGTTCCCCACATTCAGGCCATCCACGAGTACATGGGCATTTCTACCCT CGTCCTCTACAGTTGCCAGGTATGTGGCCGCTTGGGCAGAGGTCAGAAGG CGTGCAAGGAGGCCGTCAGAGGCAACGGCTGGCATGGACGGGTGGGAGGG TAGTTGGGCGGCGGTGGCGGAGGGGCAGCGGTGGCGGAGGGGCAGCGGCC CTTAGGCAAGCAAAGAAGTCGTACTGACAAGCACCCTCCAGCTCATTTTC GGCCTGGTTGTGTTTGCCATCCCTCAGATCCCTGCCAAGATCAAGGCCGT CATGGTGCCCCTCCATAGGGGCACGGGCGTCATGCTCTTCTGCATGGTCC TCGGCAGCATCACCAGCGGCTTCACTTACTTCAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120378:51..435+

>mRNA_M-pyrifera_M_contig120378.4201.1 ID=mRNA_M-pyrifera_M_contig120378.4201.1|Name=mRNA_M-pyrifera_M_contig120378.4201.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig120378:51..435+ (Macrocystis pyrifera P11B4 male)
TCCGTTCCCCACATTCAGGCCATCCACGAGTACATGGGCATTTCTACCCT
CGTCCTCTACAGTTGCCAGTCCGTTCCCCACATTCAGGCCATCCACGAGT
ACATGGGCATTTCTACCCTCGTCCTCTACAGTTGCCAGCTCATTTTCGGC
CTGGTTGTGTTTGCCATCCCTCAGATCCCTGCCAAGATCAAGGCCGTCAT
GGTGCCCCTCCATAGGGGCACGGGCGTCATGCTCTTCTGCATGGTCCTCG
GCAGCATCACCAGCGGCTTCACTTACTTCAACCTCATTTTCGGCCTGGTT
GTGTTTGCCATCCCTCAGATCCCTGCCAAGATCAAGGCCGTCATGGTGCC
CCTCCATAGGGGCACGGGCGTCATGCTCTTCTGCATGGTCCTCGGCAGCA
TCACCAGCGGCTTCACTTACTTCAAC
back to top