mRNA_M-pyrifera_M_contig119875.4106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119875.4106.1
Unique NamemRNA_M-pyrifera_M_contig119875.4106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119875.4106.1 vs. uniprot
Match: UPI001EB03BC4 (uncharacterized protein LOC124148372 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB03BC4)

HSP 1 Score: 68.2 bits (165), Expect = 2.570e-10
Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:  112 LELAVVMDGTMSMRKHFESFHASLTTAMSWIKDAVGDHATVKWAVVVYTDFPKKANIGLGEFAAETLCDFETDTSRVASIVEAYKGATG---YDWAEDFQSGVQQALDLSWTEHSLKVFIGVLDAPPHGIGNEKHDNYPQGSPTG 537
            L+LA V+D T+SM+K+ ++  A++   +   K    +   V+ A++ Y D          EF    + DF +    + S ++  K  T     D  E    G+ +  +L+W + + K+ + V DAPPHG+G +  DNYP+G P G
Sbjct:    4 LDLAFVLDCTVSMKKYIDAAKANIKRIVD--KIVASEKRDVRLALIQYRDHFSPWR----EFDTVRVRDFTSSVLTMKSWLDVCKAVTEGNIIDAPEAVADGLHELTNLTWRKDATKIAVLVCDAPPHGLGGDG-DNYPKGCPRG 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119875.4106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001EB03BC42.570e-1029.66uncharacterized protein LOC124148372 n=1 Tax=Halio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119875contigM-pyrifera_M_contig119875:6..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue5e-08
Seed eggNOG ortholog5127.CCT67640
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha-kinase family
EggNOG OGs1FUCI@110618,21PZT@147550,28NQ8@1,2QVA3@2759,38GUZ@33154,3Q35R@4751,3QS66@4890,3TTPS@5125
COG Functional cat.S
Best tax levelNectriaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.8725562-CDS-M-pyrifera_M_contig119875:5..5421622815718.8725562-CDS-M-pyrifera_M_contig119875:5..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119875 6..542 +
1692277536.9145825-CDS-M-pyrifera_M_contig119875:5..5421692277536.9145825-CDS-M-pyrifera_M_contig119875:5..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119875 6..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119875.4106.1prot_M-pyrifera_M_contig119875.4106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119875 6..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119875.4106.1

>prot_M-pyrifera_M_contig119875.4106.1 ID=prot_M-pyrifera_M_contig119875.4106.1|Name=mRNA_M-pyrifera_M_contig119875.4106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
MGIGWKGSSTHRHRGGGGEGLSGGDDTPKGFDTARPVLELAVVMDGTMSM
RKHFESFHASLTTAMSWIKDAVGDHATVKWAVVVYTDFPKKANIGLGEFA
AETLCDFETDTSRVASIVEAYKGATGYDWAEDFQSGVQQALDLSWTEHSL
KVFIGVLDAPPHGIGNEKHDNYPQGSPTG
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mRNA from alignment at M-pyrifera_M_contig119875:6..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119875.4106.1 ID=mRNA_M-pyrifera_M_contig119875.4106.1|Name=mRNA_M-pyrifera_M_contig119875.4106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig119875:6..542+ (Macrocystis pyrifera P11B4 male)
ATGGGGATTGGCTGGAAAGGGTCCTCAACTCATCGTCATCGAGGAGGTGG
GGGAGAAGGATTGAGTGGGGGTGATGATACTCCAAAGGGTTTTGATACTG
CGAGGCCCGTGTTGGAGCTCGCTGTGGTGATGGATGGAACAATGTCAATG
AGGAAGCATTTCGAGTCGTTTCACGCATCCTTGACAACAGCAATGAGCTG
GATCAAAGACGCAGTGGGAGATCATGCCACCGTCAAGTGGGCAGTTGTGG
TGTACACTGACTTCCCCAAGAAGGCAAACATTGGACTTGGGGAATTTGCA
GCGGAAACGTTGTGTGATTTTGAAACTGACACTAGTCGCGTCGCAAGCAT
CGTAGAAGCATACAAAGGTGCAACTGGGTATGATTGGGCAGAAGATTTTC
AGTCTGGAGTGCAACAAGCTCTTGATCTTTCGTGGACAGAGCATTCCCTC
AAAGTGTTTATTGGCGTTCTCGATGCTCCACCACATGGCATCGGGAATGA
GAAACACGACAACTACCCCCAAGGATCCCCAACTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119875:6..542+

>mRNA_M-pyrifera_M_contig119875.4106.1 ID=mRNA_M-pyrifera_M_contig119875.4106.1|Name=mRNA_M-pyrifera_M_contig119875.4106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig119875:6..542+ (Macrocystis pyrifera P11B4 male)
ATGGGGATTGGCTGGAAAGGGTCCTCAACTCATCGTCATCGAGGAGGTGG
GGGAGAAGGATTGAGTGGGGGTGATGATACTCCAAAGGGTTTTGATACTG
CGAGGCCCGTGTTGGAGCTCGCTGTGGTGATGGATGGAACAATGTCAATG
AGGAAGCATTTCGAGTCGTTTCACGCATCCTTGACAACAGCAATGAGCTG
GATCAAAGACGCAGTGGGAGATCATGCCACCGTCAAGTGGGCAGTTGTGG
TGTACACTGACTTCCCCAAGAAGGCAAACATTGGACTTGGGGAATTTGCA
GCGGAAACGTTGTGTGATTTTGAAACTGACACTAGTCGCGTCGCAAGCAT
CGTAGAAGCATACAAAGGTGCAACTGGGTATGATTGGGCAGAAGATTTTC
AGTCTGGAGTGCAACAAGCTCTTGATCTTTCGTGGACAGAGCATTCCCTC
AAAGTGTTTATTGGCGTTCTCGATGCTCCACCACATGGCATCGGGAATGA
GAAACACGACAACTACCCCCAAGGATCCCCAACTGGAATGGGGATTGGCT
GGAAAGGGTCCTCAACTCATCGTCATCGAGGAGGTGGGGGAGAAGGATTG
AGTGGGGGTGATGATACTCCAAAGGGTTTTGATACTGCGAGGCCCGTGTT
GGAGCTCGCTGTGGTGATGGATGGAACAATGTCAATGAGGAAGCATTTCG
AGTCGTTTCACGCATCCTTGACAACAGCAATGAGCTGGATCAAAGACGCA
GTGGGAGATCATGCCACCGTCAAGTGGGCAGTTGTGGTGTACACTGACTT
CCCCAAGAAGGCAAACATTGGACTTGGGGAATTTGCAGCGGAAACGTTGT
GTGATTTTGAAACTGACACTAGTCGCGTCGCAAGCATCGTAGAAGCATAC
AAAGGTGCAACTGGGTATGATTGGGCAGAAGATTTTCAGTCTGGAGTGCA
ACAAGCTCTTGATCTTTCGTGGACAGAGCATTCCCTCAAAGTGTTTATTG
GCGTTCTCGATGCTCCACCACATGGCATCGGGAATGAGAAACACGACAAC
TACCCCCAAGGATCCCCAACTGGA
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