mRNA_M-pyrifera_M_contig119808.4073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119808.4073.1
Unique NamemRNA_M-pyrifera_M_contig119808.4073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A397TQ03_9GLOM (Ribonucleases P/MRP protein subunit POP1-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TQ03_9GLOM)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-9
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNLEQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+H+RRRAASHNV R+P  +RK+A+ E E          KK+ +++ ++P   + E +R +    WLETH+W  KRM +T  WG++LV  P
Sbjct:   82 PRHLRRRAASHNVKRLPVRLRKKAMDEMESDN----TALKKQSRRKRRRPGSLSTEYKRRQGNKKWLETHMWHSKRMKMTDKWGYKLVEHP 168          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A2N1NKR0_9GLOM (POP1-domain-containing protein n=9 Tax=Rhizophagus TaxID=1129544 RepID=A0A2N1NKR0_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 8.580e-9
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNLEQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+H+RRRAASHNV R+P  +RK+AI E E    +     KK+ +++ ++    + E +R +    WLETH+W  KRM +T  WG++L   P
Sbjct:   84 PRHLRRRAASHNVKRLPVRLRKKAIDEME----LDNTAPKKQNRRKRRRLGSLSAEYKRRQGNKKWLETHMWHSKRMKMTEIWGYKLAEHP 170          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: UPI0020192CE3 (ribonucleases P/MRP protein subunit POP1 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI0020192CE3)

HSP 1 Score: 60.8 bits (146), Expect = 8.680e-9
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNLEQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+HMRRRA SHNV R+P  +R+ A +E E+A   +K   K +  K  +    K LE  R +    WLETH+W  KR H+   WG+ L   P
Sbjct:  136 PRHMRRRAMSHNVKRLPRRLREMAQKEAEKAVHQKKEHSKNKSHKARRCHLNKTLEFNRRQKKNKWLETHIWHAKRFHMVKKWGYCLGERP 226          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A238FR84_9BASI (BQ2448_7750 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FR84_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-8
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNL-EQRRLRS------------GAHWLETHVWARKRMHLTLCWGWQLVRL 270
            P+H+RRRAASHN+ R+P+ +RK+A+ E +      K   K     + KK   K L  +RRLR             G  WLETHVW  KRMH+T  WG++LVRL
Sbjct:  111 PRHLRRRAASHNIRRLPTRLRKRALAEGDNCPPPPKKTPK--DAAKPKKVTRKMLGPRRRLRGRSKAAALLKRQRGKLWLETHVWHAKRMHMTTRWGYRLVRL 211          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A1S8W4Z1_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W4Z1_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-8
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNLEQRRLRSGAH--WLETHVWARKRMHLTLCWGWQLVRLP 273
            P+HMRRRAASHN+ R+P  +R++A+ + E+ ++ ++       +KR KK + K+L +  L   AH  WLETHVW  KRM +   WG++L   P
Sbjct:  144 PRHMRRRAASHNIKRLPMNIRRRAMLQMEKDDKPQQIA-----KKRYKKRQAKSLREEFLTRPAHNTWLETHVWHSKRMKMVEKWGYKLADHP 231          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A1S3H3E3_LINUN (ribonucleases P/MRP protein subunit POP1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H3E3_LINUN)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-8
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNL--EQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+HMRRRAASHN+ R+P  +R QA+       E+  AG K +   R  + R KNL  E  R +   +WLETH+W  KR H+   WG+ +   P
Sbjct:  128 PRHMRRRAASHNIKRLPRRLRMQAM------AEIESAGKKPKTPSRYHRRRPKNLMAEYNRRQRKQNWLETHIWHAKRFHMIEKWGYVIPHFP 214          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A2R2MRZ3_LINUN (ribonucleases P/MRP protein subunit POP1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MRZ3_LINUN)

HSP 1 Score: 60.5 bits (145), Expect = 1.200e-8
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNL--EQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+HMRRRAASHN+ R+P  +R QA+       E+  AG K +   R  + R KNL  E  R +   +WLETH+W  KR H+   WG+ +   P
Sbjct:   99 PRHMRRRAASHNIKRLPRRLRMQAM------AEIESAGKKPKTPSRYHRRRPKNLMAEYNRRQRKQNWLETHIWHAKRFHMIEKWGYVIPHFP 185          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A2Z6QBK7_9GLOM (POP1-domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QBK7_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-8
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNL--EQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+H+RRRAASHNV R+P  +RK+A      +EEM       ++Q R K+ R  +L  E +R +    WLETH+W  KRM +T  WG++L   P
Sbjct:   84 PRHLRRRAASHNVKRLPVRLRKKA------SEEMELDNTTSKKQNRRKRRRLGSLSAEYKRRQGNKKWLETHMWHSKRMKMTEIWGYKLAEHP 170          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A4P9XUE4_9FUNG (NUC188 domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XUE4_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 2.170e-8
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRT--KKPREKNLEQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP 273
            P+H+RRRAASHN  R+P+ VR +A+RE     +   AG  K QQ R   ++P     E RR +    WLETH+W  KRM +T  WG++L   P
Sbjct:   29 PRHLRRRAASHNPKRLPARVRGKALREASARRQC--AGMAKHQQSRRARRRPGAIAAEYRRRQEEKLWLETHIWHTKRMKMTDIWGYRLAEHP 119          
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Match: A0A397UCQ1_9GLOM (Uncharacterized protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UCQ1_9GLOM)

HSP 1 Score: 58.9 bits (141), Expect = 4.100e-8
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 PKHMRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREKNL--EQRRLRSGAHWLETHVWARKRMHLTLCWGWQL 261
            P+H+RRRAASHNV R+P  +RKQA      AEEM K     ++  R KK R  +L  E +R +    WLETH+W  KRM +   WG +L
Sbjct:   85 PRHLRRRAASHNVKRLPVRLRKQA------AEEMAKYNTAPKKPNRRKKRRPGSLADEYKRRQGTKRWLETHIWHAKRMKMIELWGHKL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119808.4073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397TQ03_9GLOM3.370e-941.76Ribonucleases P/MRP protein subunit POP1-domain-co... [more]
A0A2N1NKR0_9GLOM8.580e-940.66POP1-domain-containing protein n=9 Tax=Rhizophagus... [more]
UPI0020192CE38.680e-941.76ribonucleases P/MRP protein subunit POP1 n=1 Tax=P... [more]
A0A238FR84_9BASI1.180e-843.69BQ2448_7750 protein n=1 Tax=Microbotryum intermedi... [more]
A0A1S8W4Z1_9FUNG1.180e-841.94Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A1S3H3E3_LINUN1.180e-841.94ribonucleases P/MRP protein subunit POP1 n=1 Tax=L... [more]
A0A2R2MRZ3_LINUN1.200e-841.94ribonucleases P/MRP protein subunit POP1-like n=1 ... [more]
A0A2Z6QBK7_9GLOM1.600e-843.01POP1-domain-containing protein n=1 Tax=Rhizophagus... [more]
A0A4P9XUE4_9FUNG2.170e-844.09NUC188 domain-containing protein (Fragment) n=1 Ta... [more]
A0A397UCQ1_9GLOM4.100e-846.07Uncharacterized protein n=2 Tax=Gigaspora TaxID=48... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119808contigM-pyrifera_M_contig119808:2..274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size273
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.2904248-UTR-M-pyrifera_M_contig119808:1..101622815717.2904248-UTR-M-pyrifera_M_contig119808:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119808 2..10 +
1692277536.2290983-UTR-M-pyrifera_M_contig119808:1..101692277536.2290983-UTR-M-pyrifera_M_contig119808:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119808 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.3030064-CDS-M-pyrifera_M_contig119808:10..2741622815717.3030064-CDS-M-pyrifera_M_contig119808:10..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119808 11..274 +
1692277536.2379043-CDS-M-pyrifera_M_contig119808:10..2741692277536.2379043-CDS-M-pyrifera_M_contig119808:10..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119808 11..274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119808.4073.1prot_M-pyrifera_M_contig119808.4073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119808 11..274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119808.4073.1

>prot_M-pyrifera_M_contig119808.4073.1 ID=prot_M-pyrifera_M_contig119808.4073.1|Name=mRNA_M-pyrifera_M_contig119808.4073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MRRRAASHNVNRVPSAVRKQAIRERERAEEMRKAGDKKRQQKRTKKPREK
NLEQRRLRSGAHWLETHVWARKRMHLTLCWGWQLVRLP
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mRNA from alignment at M-pyrifera_M_contig119808:2..274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119808.4073.1 ID=mRNA_M-pyrifera_M_contig119808.4073.1|Name=mRNA_M-pyrifera_M_contig119808.4073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig119808:2..274+ (Macrocystis pyrifera P11B4 male)
CCGAAGCATATGAGAAGAAGGGCTGCTTCTCATAATGTCAACAGAGTCCC TTCTGCTGTGAGAAAGCAAGCGATCAGAGAGAGGGAGAGGGCCGAGGAGA TGAGGAAGGCCGGCGACAAGAAACGACAGCAGAAACGCACTAAGAAACCC AGAGAGAAGAATCTCGAGCAGCGCAGGCTCCGCTCTGGTGCCCACTGGCT GGAAACCCACGTCTGGGCACGCAAGCGCATGCACCTCACCCTGTGCTGGG GCTGGCAGCTGGTCCGCCTCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119808:2..274+

>mRNA_M-pyrifera_M_contig119808.4073.1 ID=mRNA_M-pyrifera_M_contig119808.4073.1|Name=mRNA_M-pyrifera_M_contig119808.4073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig119808:2..274+ (Macrocystis pyrifera P11B4 male)
ATGAGAAGAAGGGCTGCTTCTCATAATGTCAACAGAGTCCCTTCTGCTGT
GAGAAAGCAAGCGATCAGAGAGAGGGAGAGGGCCGAGGAGATGAGGAAGG
CCGGCGACAAGAAACGACAGCAGAAACGCACTAAGAAACCCAGAGAGAAG
AATCTCGAGCAGCGCAGGCTCCGCTCTGGTGCCCACTGGCTGGAAACCCA
CGTCTGGGCACGCAAGCGCATGCACCTCACCCTGTGCTGGGGCTGGCAGC
TGGTCCGCCTCCCTATGAGAAGAAGGGCTGCTTCTCATAATGTCAACAGA
GTCCCTTCTGCTGTGAGAAAGCAAGCGATCAGAGAGAGGGAGAGGGCCGA
GGAGATGAGGAAGGCCGGCGACAAGAAACGACAGCAGAAACGCACTAAGA
AACCCAGAGAGAAGAATCTCGAGCAGCGCAGGCTCCGCTCTGGTGCCCAC
TGGCTGGAAACCCACGTCTGGGCACGCAAGCGCATGCACCTCACCCTGTG
CTGGGGCTGGCAGCTGGTCCGCCTCCCT
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