mRNA_M-pyrifera_M_contig119295.3974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119295.3974.1
Unique NamemRNA_M-pyrifera_M_contig119295.3974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A7W8FZ16_9GAMM (Uncharacterized protein n=1 Tax=Chiayiivirga flava TaxID=659595 RepID=A0A7W8FZ16_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 4.640e-26
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVA-VDALDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAPEF 324
            N+AP L   TFT+ ENSA GT VGS +  TD D GQTLTY++  GNTG  F +D +TG + VA   ALDFE    + LT    DDG PALSATAT+ ++L DVNEAP+ 
Sbjct:  260 NQAPTLDPQTFTLAENSAAGTAVGS-IAGTDPDAGQTLTYAITGGNTGNAFAIDAATGAISVANAAALDFEAGATFALTVTATDDGDPALSATATITIDLDDVNEAPQI 367          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A7L4ZXL2_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Hymenobacter busanensis TaxID=2607656 RepID=A0A7L4ZXL2_9BACT)

HSP 1 Score: 109 bits (272), Expect = 1.600e-25
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAPEF 324
            N AP +   T TV EN+A G  VG+ + A+D D GQTLTYS+ AGNTGG F ++ S+GQ+ VA  A L+FE    Y LT QV D+G+P+ SA+ATV VNL +VNEAP  
Sbjct:  403 NNAPTISSQTRTVAENAANGNNVGAVVTASDPDAGQTLTYSITAGNTGGAFAINASSGQITVANSAQLNFEATPSYALTVQVADNGIPSRSASATVTVNLTNVNEAPSI 511          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: UPI0019E3678B (Cadherin domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019E3678B)

HSP 1 Score: 106 bits (264), Expect = 1.930e-24
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            NEAPV   ATFT+DEN A G+ VG+  +ATD D G TLTYS++AGN  G F +D +TG + VA  A LDFE    + LT +V D+G P L  TAT+ +NL D+NEAP
Sbjct: 1124 NEAPVANDATFTIDENLAAGSFVGTA-IATDEDFGDTLTYSIIAGNDNGAFAIDPATGDITVANSAALDFETTPTFALTVRVRDNGNPRLEDTATITINLNDLNEAP 1229          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A7C6VZJ3_9GAMM (Tandem-95 repeat protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6VZJ3_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 2.620e-24
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            N  PV+  A F++ ENSA G  VGSP+  TD D GQT T+++  GNTG  F ++ +TGQ+ VA  A LDFE    ++LT QV DDG PA S +ATV +NL +VNEAP
Sbjct:  698 NSPPVVDAANFSIAENSADGASVGSPITFTDPDTGQTHTFAITGGNTGDAFAINANTGQITVASGAALDFETTPTFSLTVQVTDDGTPAQSGSATVTINLTNVNEAP 804          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: UPI0019F10434 (Cadherin domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F10434)

HSP 1 Score: 104 bits (259), Expect = 9.050e-24
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            NEAPVL   TF+++ENS V T+VG  L+A D D GQTLTYS+ AGN  G F +D +TG + VA  A LDFE  T + LT  V DDG P LS TA VV+N+ DVNE P
Sbjct: 1127 NEAPVLADRTFSLNENSPVDTVVGQ-LMAVDSDLGQTLTYSITAGNESGAFAIDPATGIITVADSAPLDFETTTTFQLTISVTDDGEPPLSDTADVVINILDVNEPP 1232          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A7L4ZVQ8_9BACT (Cadherin domain-containing protein n=1 Tax=Hymenobacter busanensis TaxID=2607656 RepID=A0A7L4ZVQ8_9BACT)

HSP 1 Score: 102 bits (254), Expect = 4.280e-23
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNE 312
            N  PV+   TF++ ENS   T+VG+ + A+D D GQTLTYSL AGNTGG F ++ STGQLRVA  A LD+E  T + LT QV D+G P+ +A+AT+ VNL +V++
Sbjct:  476 NANPVIAAQTFSIAENSVNNTVVGT-VAASDPDAGQTLTYSLTAGNTGGAFSINSSTGQLRVANSAALDYETTTSFALTVQVADNGSPSKNASATITVNLTNVDD 579          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A482UPP8_9ARCH (Cadherin repeat domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPP8_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 1.490e-22
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDALDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            N+ P++   + ++ ENSAVG  VG+P+V TD D  Q L YS+ +GN    FE++ STGQ+RVA   LDFE RT Y L+ Q  D+G+  LSA  TV +++ DV EAP
Sbjct: 1102 NDPPIMPDYSRSIAENSAVGANVGAPVVGTDTDAAQVLAYSISSGNVDDTFEINSSTGQVRVARALLDFETRTRYVLSVQCTDNGMGRLSAVGTVTIDVTDVGEAP 1207          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: R7UW24_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UW24_CAPTE)

HSP 1 Score: 99.4 bits (246), Expect = 3.970e-22
Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAV-GTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDALDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            N+AP L  A+F+V+EN A  G++V   + ATDVD GQ+ TYS+++GN  G F +D +TG++ V V  LD E   +Y+LT QV DDG PALS TATV +++ D+NEAP
Sbjct:   93 NDAPELSDASFSVNENVASDGSIVLGTMTATDVDVGQSKTYSILSGNDDGHFAIDSNTGEISV-VGNLDHEGTAQYSLTVQVTDDGSPALSDTATVTIDVNDINEAP 198          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: UPI001B305C62 (cadherin domain-containing protein n=1 Tax=Hymenobacter terricola TaxID=2819236 RepID=UPI001B305C62)

HSP 1 Score: 99.4 bits (246), Expect = 5.120e-22
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDA-LDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            N  PV+   +F++ ENSA  T+VG+ + A+D D GQTLTY++ AGNTG  F ++ +TGQL VA  A LDFE    + LT +V D+G P L+ + TV VNL +VNEAP
Sbjct:  575 NRPPVIAAQSFSLAENSAAATVVGT-VAASDPDAGQTLTYAITAGNTGTAFAINATTGQLTVATPAALDFETTPSFALTVRVTDNGTPVLNTSNTVTVNLTNVNEAP 680          
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Match: A0A1M6LVH8_9BACT (Fibronectin type III domain-containing protein n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6LVH8_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 5.150e-22
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGVFEVDGSTGQLRVAVDALDFERRTEYTLTAQVVDDGVPALSATATVVVNLRDVNEAP 318
            N APV+ G +F++ ENS +GT+VG+ +VA D D GQ+L+Y++ AGNTGG F V+  TG++     ALD+E+ ++Y L+ +V D G+  LS TA++ VN+ DVNEAP
Sbjct: 1322 NSAPVIAGQSFSIAENSTIGTVVGT-IVAADPDQGQSLSYAITAGNTGGEFTVNSGTGEITTTT-ALDYEKNSQYVLSVEVTDAGL--LSDTASITVNVNDVNEAP 1423          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119295.3974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W8FZ16_9GAMM4.640e-2655.05Uncharacterized protein n=1 Tax=Chiayiivirga flava... [more]
A0A7L4ZXL2_9BACT1.600e-2554.13T9SS type A sorting domain-containing protein n=1 ... [more]
UPI0019E3678B1.930e-2454.21Cadherin domain-containing protein n=1 Tax=Leptoly... [more]
A0A7C6VZJ3_9GAMM2.620e-2452.34Tandem-95 repeat protein n=1 Tax=Xanthomonadaceae ... [more]
UPI0019F104349.050e-2457.01Cadherin domain-containing protein n=1 Tax=Leptoly... [more]
A0A7L4ZVQ8_9BACT4.280e-2353.33Cadherin domain-containing protein n=1 Tax=Hymenob... [more]
A0A482UPP8_9ARCH1.490e-2248.11Cadherin repeat domain-containing protein (Fragmen... [more]
R7UW24_CAPTE3.970e-2251.40Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
UPI001B305C625.120e-2250.47cadherin domain-containing protein n=1 Tax=Hymenob... [more]
A0A1M6LVH8_9BACT5.150e-2249.06Fibronectin type III domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119295contigM-pyrifera_M_contig119295:11..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.8
Seed ortholog evalue8.5e-19
Seed eggNOG ortholog305900.GV64_16590
KEGG koko:K01179,ko:K01387,ko:K20276
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,ko02024,map00500,map01100,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Concanavalin A-like lectin/glucanases superfamily
EggNOG OGs1QYMC@1224,1T3SC@1236,COG0726@1,COG0726@2,COG2911@1,COG2911@2,COG2931@1,COG2931@2,COG3291@1,COG3291@2,COG3533@1,COG3533@2,COG4719@1,COG4719@2,COG4733@1,COG4733@2,COG4932@1,COG4932@2,COG5184@1,COG5184@2,COG5434@1,COG5434@2
EC3.2.1.4,3.4.24.3
COG Functional cat.MQ
CAZyGH5,GH9
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02042
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.42022-CDS-M-pyrifera_M_contig119295:10..3341622815712.42022-CDS-M-pyrifera_M_contig119295:10..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119295 11..334 -
1692277534.1854517-CDS-M-pyrifera_M_contig119295:10..3341692277534.1854517-CDS-M-pyrifera_M_contig119295:10..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119295 11..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119295.3974.1prot_M-pyrifera_M_contig119295.3974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119295 11..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119295.3974.1

>prot_M-pyrifera_M_contig119295.3974.1 ID=prot_M-pyrifera_M_contig119295.3974.1|Name=mRNA_M-pyrifera_M_contig119295.3974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
NEAPVLQGATFTVDENSAVGTLVGSPLVATDVDGGQTLTYSLVAGNTGGV
FEVDGSTGQLRVAVDALDFERRTEYTLTAQVVDDGVPALSATATVVVNLR
DVNEAPEF
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mRNA from alignment at M-pyrifera_M_contig119295:11..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119295.3974.1 ID=mRNA_M-pyrifera_M_contig119295.3974.1|Name=mRNA_M-pyrifera_M_contig119295.3974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig119295:11..334- (Macrocystis pyrifera P11B4 male)
AACGAGGCGCCGGTGCTGCAGGGTGCGACGTTCACGGTGGACGAGAACAG CGCGGTGGGCACGCTGGTGGGTTCACCGCTGGTGGCGACGGACGTGGACG GCGGTCAGACGCTGACGTACTCGCTGGTGGCGGGCAACACGGGTGGTGTG TTTGAGGTGGACGGGTCGACGGGCCAGCTGCGGGTGGCGGTGGACGCGCT GGACTTTGAGCGGCGGACGGAGTACACGCTGACGGCGCAGGTGGTGGACG ATGGCGTGCCGGCGCTGAGCGCGACGGCGACGGTGGTGGTGAACCTGCGT GACGTGAACGAGGCGCCGGAGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119295:11..334-

>mRNA_M-pyrifera_M_contig119295.3974.1 ID=mRNA_M-pyrifera_M_contig119295.3974.1|Name=mRNA_M-pyrifera_M_contig119295.3974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig119295:11..334- (Macrocystis pyrifera P11B4 male)
AACGAGGCGCCGGTGCTGCAGGGTGCGACGTTCACGGTGGACGAGAACAG
CGCGGTGGGCACGCTGGTGGGTTCACCGCTGGTGGCGACGGACGTGGACG
GCGGTCAGACGCTGACGTACTCGCTGGTGGCGGGCAACACGGGTGGTGTG
TTTGAGGTGGACGGGTCGACGGGCCAGCTGCGGGTGGCGGTGGACGCGCT
GGACTTTGAGCGGCGGACGGAGTACACGCTGACGGCGCAGGTGGTGGACG
ATGGCGTGCCGGCGCTGAGCGCGACGGCGACGGTGGTGGTGAACCTGCGT
GACGTGAACGAGGCGCCGGAGTTTAACGAGGCGCCGGTGCTGCAGGGTGC
GACGTTCACGGTGGACGAGAACAGCGCGGTGGGCACGCTGGTGGGTTCAC
CGCTGGTGGCGACGGACGTGGACGGCGGTCAGACGCTGACGTACTCGCTG
GTGGCGGGCAACACGGGTGGTGTGTTTGAGGTGGACGGGTCGACGGGCCA
GCTGCGGGTGGCGGTGGACGCGCTGGACTTTGAGCGGCGGACGGAGTACA
CGCTGACGGCGCAGGTGGTGGACGATGGCGTGCCGGCGCTGAGCGCGACG
GCGACGGTGGTGGTGAACCTGCGTGACGTGAACGAGGCGCCGGAGTTT
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