mRNA_M-pyrifera_M_contig119168.3947.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119168.3947.1
Unique NamemRNA_M-pyrifera_M_contig119168.3947.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: UPI0019B70EB0 (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019B70EB0)

HSP 1 Score: 64.7 bits (156), Expect = 1.810e-11
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   19 LNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            L KLL A   V   L+ L+LP  PLL W+AFWLL VNWVKLR V++ GG IGVVLI L+ +L
Sbjct:    8 LQKLLAASWDVVISLLVLILPWTPLLAWVAFWLLAVNWVKLRDVMIRGGWIGVVLIGLVMVL 69          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A3E0Q8T0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q8T0_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.430e-11
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 MELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            MEL   L  LL A+L V A L + + P  PL+ W+AFW L VNWV LR+ LLSGG IG+VLI LM IL
Sbjct:    1 MELLESLLNLLVAILEVLAALAKTIAPWWPLIAWVAFWSLAVNWVSLRKTLLSGGWIGLVLIGLMMIL 68          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A1P8WCB8_9PLAN (Uncharacterized protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WCB8_9PLAN)

HSP 1 Score: 60.1 bits (144), Expect = 9.230e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    4 ELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAI 201
            ELF  L  +  +LL V    V+++LP +PLL WIAFW L VNWVK   +L  GG IGV+L+M +A+
Sbjct:    6 ELFHSLVNVFWSLLDVVVAFVKVILPWLPLLAWIAFWSLAVNWVKTFDILRRGGFIGVLLLMFVAV 71          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A517Z5U2_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z5U2_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.000e-9
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 MELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            MEL   L  ++ A++ +   L   + P  PL+ WIAFW L V+WVKLR +L SGG+IGV+LI L+A+L
Sbjct:    1 MELLTSLWNVVVAVVDLLVTLASTLWPWAPLIAWIAFWTLAVDWVKLRSILWSGGIIGVLLIALVAVL 68          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A5C5X358_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X358_9PLAN)

HSP 1 Score: 57.4 bits (137), Expect = 8.950e-9
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 MELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            MEL   L  ++ A+ ++   LV  V P +PLL WIAFWL  VNW +L  VL+ GG+IGVVLI L+A+L
Sbjct:    1 MELLHSLWAVVVAVANLLVALVIFVAPWVPLLAWIAFWLCAVNWRRLYPVLMKGGMIGVVLIGLIAML 68          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A517QSV4_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QSV4_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.170e-8
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   37 ALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            AL  +  +LVQ V P +PLL WIAFWL  VNW +L  +L  GG+IGV+L  LMA+L
Sbjct:   13 ALGQLVVDLVQFVSPWVPLLAWIAFWLCAVNWRQLYPILEKGGIIGVILTALMAVL 68          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: UPI000299F389 (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI000299F389)

HSP 1 Score: 55.8 bits (133), Expect = 5.570e-8
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   19 LNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            L  LL A   V   L+ LV+P  PL+ W+AFWLL VNW KL  VL  GG IGV LI LM IL
Sbjct:    8 LQNLLVAGWAVVVSLLGLVVPWAPLIAWVAFWLLAVNWEKLYPVLAKGGAIGVFLIGLMMIL 69          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A836RJC9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RJC9_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-7
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   19 LNKLLDALLHVGAELVQLVL--PLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
            L +L  A+ HV   ++ +V   P++P+L+W+AFWL  V+WV+LR +LL GG + V+LI LM IL
Sbjct:   12 LIQLFLAVWHVAIGILSMVATPPVLPMLLWVAFWLFAVDWVRLRTILLKGGWVAVLLIGLMTIL 75          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A352L3G8_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A352L3G8_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 4.460e-7
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    4 ELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMAIL 204
             LF  L  +  ALL++   +V +++P +PLL W+AF+ L VNW K   +L  GG++GV+L+M++A+L
Sbjct:   29 NLFTSLVDVFQALLNLVVSVVLVLIPWLPLLAWLAFFSLAVNWAKAYPILRRGGILGVLLLMVVAVL 95          
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Match: A0A7C4QN45_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QN45_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.640e-7
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   19 LNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQVLLSGGVIGVVLIMLMA 198
            L +LL AL  +   ++ L++P  PL  W+AFWL  V+WVKLR++++ GG IG+VL+ +MA
Sbjct:    8 LVQLLLALWDLVVAVLALLVPWTPLAAWVAFWLYAVDWVKLREIIVRGGWIGLVLLGVMA 67          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119168.3947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
UPI0019B70EB01.810e-1159.68Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A3E0Q8T0_9BACT2.430e-1157.35Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A1P8WCB8_9PLAN9.230e-1050.00Uncharacterized protein n=1 Tax=Fuerstiella marisg... [more]
A0A517Z5U2_9PLAN3.000e-948.53Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
A0A5C5X358_9PLAN8.950e-951.47Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A517QSV4_9PLAN1.170e-855.36Uncharacterized protein n=1 Tax=Thalassoglobus pol... [more]
UPI000299F3895.570e-856.45hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
A0A836RJC9_9PLAN1.500e-746.88Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A352L3G8_9PLAN4.460e-741.79Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7C4QN45_9PLAN5.640e-746.67Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119168contigM-pyrifera_M_contig119168:6..209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.030809-CDS-M-pyrifera_M_contig119168:5..2091622815711.030809-CDS-M-pyrifera_M_contig119168:5..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119168 6..209 -
1692277533.5232024-CDS-M-pyrifera_M_contig119168:5..2091692277533.5232024-CDS-M-pyrifera_M_contig119168:5..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119168 6..209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119168.3947.1prot_M-pyrifera_M_contig119168.3947.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119168 6..209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119168.3947.1

>prot_M-pyrifera_M_contig119168.3947.1 ID=prot_M-pyrifera_M_contig119168.3947.1|Name=mRNA_M-pyrifera_M_contig119168.3947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MELFFWLNKLLDALLHVGAELVQLVLPLIPLLVWIAFWLLGVNWVKLRQV
LLSGGVIGVVLIMLMAIL
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mRNA from alignment at M-pyrifera_M_contig119168:6..209-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119168.3947.1 ID=mRNA_M-pyrifera_M_contig119168.3947.1|Name=mRNA_M-pyrifera_M_contig119168.3947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig119168:6..209- (Macrocystis pyrifera P11B4 male)
ATGGAACTCTTTTTCTGGCTGAACAAGCTTCTGGACGCACTACTTCACGT TGGGGCCGAATTGGTCCAACTGGTGCTGCCGTTGATTCCGCTGCTGGTTT GGATTGCCTTCTGGTTGCTGGGAGTGAACTGGGTCAAGCTGCGCCAAGTC TTGTTGAGCGGTGGTGTGATTGGCGTTGTGCTCATCATGCTGATGGCCAT TCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119168:6..209-

>mRNA_M-pyrifera_M_contig119168.3947.1 ID=mRNA_M-pyrifera_M_contig119168.3947.1|Name=mRNA_M-pyrifera_M_contig119168.3947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig119168:6..209- (Macrocystis pyrifera P11B4 male)
ATGGAACTCTTTTTCTGGCTGAACAAGCTTCTGGACGCACTACTTCACGT
TGGGGCCGAATTGGTCCAACTGGTGCTGCCGTTGATTCCGCTGCTGGTTT
GGATTGCCTTCTGGTTGCTGGGAGTGAACTGGGTCAAGCTGCGCCAAGTC
TTGTTGAGCGGTGGTGTGATTGGCGTTGTGCTCATCATGCTGATGGCCAT
TCTGATGGAACTCTTTTTCTGGCTGAACAAGCTTCTGGACGCACTACTTC
ACGTTGGGGCCGAATTGGTCCAACTGGTGCTGCCGTTGATTCCGCTGCTG
GTTTGGATTGCCTTCTGGTTGCTGGGAGTGAACTGGGTCAAGCTGCGCCA
AGTCTTGTTGAGCGGTGGTGTGATTGGCGTTGTGCTCATCATGCTGATGG
CCATTCTG
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