mRNA_M-pyrifera_M_contig118913.3887.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A482S312_9ARCH (NTF2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S312_9ARCH) HSP 1 Score: 55.1 bits (131), Expect = 4.090e-9 Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFV 99
I G N LLF+Q+FQLVATGPG++YVHN++FR +
Sbjct: 34 IGGGNPLLFSQVFQLVATGPGQYYVHNEVFRLL 66
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S1ZBV8_TRICV (Nuclear transport factor 2 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV8_TRICV) HSP 1 Score: 53.5 bits (127), Expect = 5.420e-8 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
I GDN L F +MFQLV+TGPG +YVHND+FR
Sbjct: 86 IGGDNPLHFCEMFQLVSTGPGAYYVHNDVFR 116
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S4MNW5_9STRA (Nuclear transport factor 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNW5_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.420e-8 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
I GDN L F +MFQLV+TGPG +YVHND+FR
Sbjct: 86 IGGDNPLHFCEMFQLVSTGPGAYYVHNDVFR 116
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 2.120e-7 Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFV 99
ID +N + +TQ FQLVA+GP ++YVHNDIFR V
Sbjct: 86 IDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLV 118
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 2.200e-7 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
IDG N L F ++FQLV+TGPG +YVHND+FR
Sbjct: 87 IDGGNPLHFCEVFQLVSTGPGAYYVHNDVFR 117
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A6U3TR09_9STRA (Nuclear transport factor 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TR09_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7 Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
I GDN L F + FQLV+TGPG +YVHND+FR
Sbjct: 86 IGGDNPLHFCEFFQLVSTGPGAYYVHNDVFR 116
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S0BUK2_9STRA (Nuclear transport factor 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BUK2_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
I GDN L F +MFQLV+TGPG +YVHN++FR
Sbjct: 86 IGGDNPLHFCEMFQLVSTGPGAYYVHNNVFR 116
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: B7G8V7_PHATC (Nuclear transport factor 2 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V7_PHATC) HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7 Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
I GDN L F +MFQLV+T PG +YVHNDIFR
Sbjct: 86 IGGDNPLHFCEMFQLVSTAPGAYYVHNDIFR 116
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: D7G0E5_ECTSI (Nuclear transport factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E5_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 4.560e-7 Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFVQN 105
ID N L + QMFQLV+TGPG +YVHNDI R + +
Sbjct: 90 IDNGNQLHYLQMFQLVSTGPGAYYVHNDILRLIYS 124
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S3NPH7_9STRA (Nuclear transport factor 2 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPH7_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 6.080e-7 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1
Query: 1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRF 96
I+ D L +TQ+FQLV GPG++Y+HNDIFRF
Sbjct: 87 IEQDKPLKYTQLFQLVGEGPGQYYLHNDIFRF 118 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118913.3887.1 >prot_M-pyrifera_M_contig118913.3887.1 ID=prot_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFVQN*back to top mRNA from alignment at M-pyrifera_M_contig118913:363..470- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118913.3887.1 ID=mRNA_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig118913:363..470- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118913:363..470- >mRNA_M-pyrifera_M_contig118913.3887.1 ID=mRNA_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig118913:363..470- (Macrocystis pyrifera P11B4 male)back to top |