mRNA_M-pyrifera_M_contig118913.3887.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118913.3887.1
Unique NamemRNA_M-pyrifera_M_contig118913.3887.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A482S312_9ARCH (NTF2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S312_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 4.090e-9
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFV 99
            I G N LLF+Q+FQLVATGPG++YVHN++FR +
Sbjct:   34 IGGGNPLLFSQVFQLVATGPGQYYVHNEVFRLL 66          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S1ZBV8_TRICV (Nuclear transport factor 2 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV8_TRICV)

HSP 1 Score: 53.5 bits (127), Expect = 5.420e-8
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            I GDN L F +MFQLV+TGPG +YVHND+FR
Sbjct:   86 IGGDNPLHFCEMFQLVSTGPGAYYVHNDVFR 116          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S4MNW5_9STRA (Nuclear transport factor 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNW5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.420e-8
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            I GDN L F +MFQLV+TGPG +YVHND+FR
Sbjct:   86 IGGDNPLHFCEMFQLVSTGPGAYYVHNDVFR 116          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.120e-7
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFV 99
            ID +N + +TQ FQLVA+GP ++YVHNDIFR V
Sbjct:   86 IDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLV 118          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            IDG N L F ++FQLV+TGPG +YVHND+FR
Sbjct:   87 IDGGNPLHFCEVFQLVSTGPGAYYVHNDVFR 117          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A6U3TR09_9STRA (Nuclear transport factor 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TR09_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            I GDN L F + FQLV+TGPG +YVHND+FR
Sbjct:   86 IGGDNPLHFCEFFQLVSTGPGAYYVHNDVFR 116          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S0BUK2_9STRA (Nuclear transport factor 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BUK2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            I GDN L F +MFQLV+TGPG +YVHN++FR
Sbjct:   86 IGGDNPLHFCEMFQLVSTGPGAYYVHNNVFR 116          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: B7G8V7_PHATC (Nuclear transport factor 2 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V7_PHATC)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-7
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFR 93
            I GDN L F +MFQLV+T PG +YVHNDIFR
Sbjct:   86 IGGDNPLHFCEMFQLVSTAPGAYYVHNDIFR 116          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: D7G0E5_ECTSI (Nuclear transport factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E5_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.560e-7
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFVQN 105
            ID  N L + QMFQLV+TGPG +YVHNDI R + +
Sbjct:   90 IDNGNQLHYLQMFQLVSTGPGAYYVHNDILRLIYS 124          
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Match: A0A7S3NPH7_9STRA (Nuclear transport factor 2 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPH7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.080e-7
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRF 96
            I+ D  L +TQ+FQLV  GPG++Y+HNDIFRF
Sbjct:   87 IEQDKPLKYTQLFQLVGEGPGQYYLHNDIFRF 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118913.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482S312_9ARCH4.090e-966.67NTF2 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S1ZBV8_TRICV5.420e-870.97Nuclear transport factor 2 n=1 Tax=Trieres chinens... [more]
A0A7S4MNW5_9STRA5.420e-870.97Nuclear transport factor 2 n=1 Tax=Odontella aurit... [more]
A0A836CA84_9STRA2.120e-763.64Nuclear transport factor 2 n=1 Tax=Tribonema minus... [more]
A0A7S3L787_9STRA2.200e-767.74Nuclear transport factor 2 (Fragment) n=1 Tax=Amph... [more]
A0A6U3TR09_9STRA3.050e-767.74Nuclear transport factor 2 n=1 Tax=Ditylum brightw... [more]
A0A7S0BUK2_9STRA3.050e-767.74Nuclear transport factor 2 n=1 Tax=Proboscia inerm... [more]
B7G8V7_PHATC3.050e-770.97Nuclear transport factor 2 n=3 Tax=Phaeodactylum t... [more]
D7G0E5_ECTSI4.560e-760.00Nuclear transport factor 2 n=1 Tax=Ectocarpus sili... [more]
A0A7S3NPH7_9STRA6.080e-762.50Nuclear transport factor 2 n=1 Tax=Aureoumbra lagu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118913contigM-pyrifera_M_contig118913:363..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.9588208-CDS-M-pyrifera_M_contig118913:362..4701622815707.9588208-CDS-M-pyrifera_M_contig118913:362..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118913 363..470 -
1692277531.9922233-CDS-M-pyrifera_M_contig118913:362..4701692277531.9922233-CDS-M-pyrifera_M_contig118913:362..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118913 363..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118913.3887.1prot_M-pyrifera_M_contig118913.3887.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118913 363..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118913.3887.1

>prot_M-pyrifera_M_contig118913.3887.1 ID=prot_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
IDGDNSLLFTQMFQLVATGPGEFYVHNDIFRFVQN*
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mRNA from alignment at M-pyrifera_M_contig118913:363..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118913.3887.1 ID=mRNA_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig118913:363..470- (Macrocystis pyrifera P11B4 male)
ATCGACGGAGACAACTCGCTGCTCTTCACGCAGATGTTCCAGCTGGTGGC TACCGGCCCGGGCGAGTTCTACGTGCACAACGACATCTTCCGCTTTGTGC AGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118913:363..470-

>mRNA_M-pyrifera_M_contig118913.3887.1 ID=mRNA_M-pyrifera_M_contig118913.3887.1|Name=mRNA_M-pyrifera_M_contig118913.3887.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig118913:363..470- (Macrocystis pyrifera P11B4 male)
ATCGACGGAGACAACTCGCTGCTCTTCACGCAGATGTTCCAGCTGGTGGC
TACCGGCCCGGGCGAGTTCTACGTGCACAACGACATCTTCCGCTTTGTGC
AGAACTGAATCGACGGAGACAACTCGCTGCTCTTCACGCAGATGTTCCAG
CTGGTGGCTACCGGCCCGGGCGAGTTCTACGTGCACAACGACATCTTCCG
CTTTGTGCAGAACTGA
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