mRNA_M-pyrifera_M_contig118878.3875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118878.3875.1
Unique NamemRNA_M-pyrifera_M_contig118878.3875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118878.3875.1 vs. uniprot
Match: A0A0R3W2M7_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W2M7_TAEAS)

HSP 1 Score: 51.2 bits (121), Expect = 2.620e-5
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    4 VAKRLGIHAPLAMVGWK-HVSGWMSVPELRGAVVIEEVKETLLSAYYKDTLDKAYSKAHKKRQALVLRWRKMARRLLTFEQL 246
            +AKRLGI A  AMVGW  H +GW   PE  G VV  EV   L+ A+  + +  A + A  + +  +  W+++ R LL ++++
Sbjct:  640 IAKRLGIDAVPAMVGWTFHKAGWAH-PEYDGFVVCREVLPVLVDAWRAERMSAAAAAAADRTERALANWKRVTRNLLLWQRI 720
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118878.3875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0R3W2M7_TAEAS2.620e-536.59Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118878contigM-pyrifera_M_contig118878:82..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.4466794-CDS-M-pyrifera_M_contig118878:81..3721622815707.4466794-CDS-M-pyrifera_M_contig118878:81..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118878 82..372 -
1692277531.7627428-CDS-M-pyrifera_M_contig118878:81..3721692277531.7627428-CDS-M-pyrifera_M_contig118878:81..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118878 82..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118878.3875.1prot_M-pyrifera_M_contig118878.3875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118878 82..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118878.3875.1

>prot_M-pyrifera_M_contig118878.3875.1 ID=prot_M-pyrifera_M_contig118878.3875.1|Name=mRNA_M-pyrifera_M_contig118878.3875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
KVAKRLGIHAPLAMVGWKHVSGWMSVPELRGAVVIEEVKETLLSAYYKDT
LDKAYSKAHKKRQALVLRWRKMARRLLTFEQLRQETGAADDGKLLAG
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mRNA from alignment at M-pyrifera_M_contig118878:82..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118878.3875.1 ID=mRNA_M-pyrifera_M_contig118878.3875.1|Name=mRNA_M-pyrifera_M_contig118878.3875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig118878:82..372- (Macrocystis pyrifera P11B4 male)
AAGGTAGCGAAGCGTCTGGGGATCCACGCACCTCTGGCAATGGTTGGTTG
GAAGCATGTTTCCGGCTGGATGTCTGTCCCTGAGCTGCGTGGGGCGGTGG
TCATTGAGGAGGTGAAGGAGACGCTCCTGAGCGCCTACTACAAGGATACC
CTGGACAAGGCCTACAGTAAGGCCCACAAGAAGCGCCAGGCCCTAGTGCT
GCGCTGGCGAAAGATGGCCAGGCGGCTGCTCACCTTCGAGCAACTGCGGC
AGGAGACCGGCGCGGCCGACGACGGCAAACTCCTCGCAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118878:82..372-

>mRNA_M-pyrifera_M_contig118878.3875.1 ID=mRNA_M-pyrifera_M_contig118878.3875.1|Name=mRNA_M-pyrifera_M_contig118878.3875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig118878:82..372- (Macrocystis pyrifera P11B4 male)
AAGGTAGCGAAGCGTCTGGGGATCCACGCACCTCTGGCAATGGTTGGTTG
GAAGCATGTTTCCGGCTGGATGTCTGTCCCTGAGCTGCGTGGGGCGGTGG
TCATTGAGGAGGTGAAGGAGACGCTCCTGAGCGCCTACTACAAGGATACC
CTGGACAAGGCCTACAGTAAGGCCCACAAGAAGCGCCAGGCCCTAGTGCT
GCGCTGGCGAAAGATGGCCAGGCGGCTGCTCACCTTCGAGCAACTGCGGC
AGGAGACCGGCGCGGCCGACGACGGCAAACTCCTCGCAGGCAAGGTAGCG
AAGCGTCTGGGGATCCACGCACCTCTGGCAATGGTTGGTTGGAAGCATGT
TTCCGGCTGGATGTCTGTCCCTGAGCTGCGTGGGGCGGTGGTCATTGAGG
AGGTGAAGGAGACGCTCCTGAGCGCCTACTACAAGGATACCCTGGACAAG
GCCTACAGTAAGGCCCACAAGAAGCGCCAGGCCCTAGTGCTGCGCTGGCG
AAAGATGGCCAGGCGGCTGCTCACCTTCGAGCAACTGCGGCAGGAGACCG
GCGCGGCCGACGACGGCAAACTCCTCGCAGGC
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