mRNA_M-pyrifera_M_contig118531.3829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118531.3829.1
Unique NamemRNA_M-pyrifera_M_contig118531.3829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118531.3829.1 vs. uniprot
Match: A0A7Y5FAI2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5FAI2_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 5.430e-21
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:   10 MSPLHVPLNRVRKRIWAQRGLTHLSQSLFVTASLACFWLLLCRLFPLLRYEVEGAATILTLGILTAGWLTYRQRPDIKTAALAADERLGLRERLTSSLELAGLESRMVTAVHRDALHHVGRLNVGRDFPL 399
            M PL   L R+R R++  +    +  SL  + +LAC WLL+ RLFP +      +  ++ LG+L A   +  +RP +  AAL AD+RLGL ER+TSSL+L G+E  MV AVH DA   + RLN   +FP 
Sbjct:    1 MDPLMAALRRLRLRLFITQWTRAVVISLIASTALACGWLLVARLFPTVGPVEPVSLVLVVLGLLAATTFSVWKRPSVLKAALEADKRLGLHERITSSLQLEGVEGAMVDAVHADARAQLARLNYTGEFPF 130
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BLAST of mRNA_M-pyrifera_M_contig118531.3829.1 vs. uniprot
Match: A0A1M5XAN0_9CLOT (Uncharacterized protein n=1 Tax=Clostridium grantii DSM 8605 TaxID=1121316 RepID=A0A1M5XAN0_9CLOT)

HSP 1 Score: 60.8 bits (146), Expect = 3.690e-8
Identity = 40/126 (31.75%), Postives = 69/126 (54.76%), Query Frame = 1 
Query:   31 LNRVRKRIWAQRGLTHLSQSLFVTASLACFWLLLCRLFPLLR-YEVEGAATILTLGILTAGWLTYRQRPDIKTAALAADERLGLRERLTSSLELAGLESRMVTAVHRDALHHVGRLNVGRDFPLQP 405
            LNR+++R++  + + +L   + +  S+    ++L R  P+ + Y + G    +   +++  W   +   DI T AL AD  LGL+ER+T+SLEL G E  M     +DAL H+ +L+  R+  L P
Sbjct:   12 LNRIKRRLFVAQLINYLIICIIIGVSIGVGIVILSRFIPIYKPYRLSGILVGIA-ALISVIWCFIKMPKDI-TTALKADS-LGLKERITTSLELKGNEEIMAQLQKKDALKHIRKLDYKRELTLVP 134
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BLAST of mRNA_M-pyrifera_M_contig118531.3829.1 vs. uniprot
Match: A0A3A0CCK5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CCK5_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.490e-7
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   10 MSPLHVPLNRVRKRIWAQRGLTHLSQSLFVTASLACFW---LLLCRL----FPLLRYEVEGAATILTLGILTAGWLTYRQRPDIKTAALAADERLGLRERLTSSLELAGLESRMVTAVHRDALHHVGRLNVGRDFPLQ 402
            MS L   + + R+R+W  R L      LF +    C W   LL+ RL    FPL    + GA   L + ++   WL   Q P++  AA+  D   GLRER+++ LE+   +     AVH DA   V  L+  R  P+Q
Sbjct:    1 MSILEKQVRQARRRLWLNRWLRIWGWCLFGSG---CIWTALLLVDRLLGIDFPLEWLALGGACISLVVSVV---WLACTQDPEL-AAAIELDRAAGLRERVSTCLEVPSADDPFAAAVHADAERSVAGLSARRLIPVQ 131
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BLAST of mRNA_M-pyrifera_M_contig118531.3829.1 vs. uniprot
Match: A0A5C5YU04_9BACT (Chromosome partition protein Smc n=1 Tax=Posidoniimonas polymericola TaxID=2528002 RepID=A0A5C5YU04_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-6
Identity = 42/130 (32.31%), Postives = 62/130 (47.69%), Query Frame = 1 
Query:   40 VRKRIWAQRG------LTHLSQSLFVTASLACFWLLLCRLFPLLRYEVEGAATILTLGILTAGWLTYRQRPDIKTAALAADERLGLRERLTSSLEL--AGLESRMVTAVHRDALHHVGRLNVGRDFPLQP 405
            VR+ +W   G      +   +  + V  +L   W          +Y + G A      ++TAG  T  QR     AA+  D R GLRER++SSL L  + LES    A+  DA+H VGR+ +G  F ++P
Sbjct:   21 VRRLVWCLTGALAVAAIAIAAPKVLVVENLPAMWA---------QYWLIGGAAA---ALITAGVWTAVQRRSSLEAAIEIDRRYGLRERVSSSLSLPESALESEAGQALMNDAVHSVGRIEIGEKFHVRP 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118531.3829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Y5FAI2_9BACT5.430e-2142.31Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1M5XAN0_9CLOT3.690e-831.75Uncharacterized protein n=1 Tax=Clostridium granti... [more]
A0A3A0CCK5_9BACT4.490e-733.33Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C5YU04_9BACT1.120e-632.31Chromosome partition protein Smc n=1 Tax=Posidonii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118531contigM-pyrifera_M_contig118531:144..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size405
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9684324-UTR-M-pyrifera_M_contig118531:143..1521622815704.9684324-UTR-M-pyrifera_M_contig118531:143..152Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118531 144..152 +
1692277530.6112454-UTR-M-pyrifera_M_contig118531:143..1521692277530.6112454-UTR-M-pyrifera_M_contig118531:143..152Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118531 144..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9784617-CDS-M-pyrifera_M_contig118531:152..5481622815704.9784617-CDS-M-pyrifera_M_contig118531:152..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118531 153..548 +
1692277530.6245835-CDS-M-pyrifera_M_contig118531:152..5481692277530.6245835-CDS-M-pyrifera_M_contig118531:152..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118531 153..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118531.3829.1prot_M-pyrifera_M_contig118531.3829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118531 153..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118531.3829.1

>prot_M-pyrifera_M_contig118531.3829.1 ID=prot_M-pyrifera_M_contig118531.3829.1|Name=mRNA_M-pyrifera_M_contig118531.3829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MSPLHVPLNRVRKRIWAQRGLTHLSQSLFVTASLACFWLLLCRLFPLLRY
EVEGAATILTLGILTAGWLTYRQRPDIKTAALAADERLGLRERLTSSLEL
AGLESRMVTAVHRDALHHVGRLNVGRDFPLQP
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mRNA from alignment at M-pyrifera_M_contig118531:144..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118531.3829.1 ID=mRNA_M-pyrifera_M_contig118531.3829.1|Name=mRNA_M-pyrifera_M_contig118531.3829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig118531:144..548+ (Macrocystis pyrifera P11B4 male)
GGTGACACCATGTCTCCCCTTCACGTTCCACTCAATCGTGTTCGAAAACG
GATTTGGGCCCAGCGGGGCCTGACGCATCTTTCCCAGTCCCTCTTCGTCA
CCGCCTCGCTCGCCTGTTTCTGGCTGCTCCTGTGCCGTCTCTTTCCGCTC
CTCCGCTATGAAGTTGAAGGCGCAGCGACAATTCTGACCCTTGGCATCCT
TACGGCCGGCTGGCTCACCTATCGACAGCGTCCCGATATTAAGACGGCCG
CCCTGGCCGCCGACGAGCGGTTGGGCCTCCGCGAGCGGCTGACGTCCTCC
CTGGAACTCGCTGGGCTGGAGTCGCGCATGGTGACCGCCGTGCACCGCGA
CGCCCTGCACCATGTGGGACGCCTCAATGTAGGCCGTGATTTTCCCCTGC
AACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118531:144..548+

>mRNA_M-pyrifera_M_contig118531.3829.1 ID=mRNA_M-pyrifera_M_contig118531.3829.1|Name=mRNA_M-pyrifera_M_contig118531.3829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig118531:144..548+ (Macrocystis pyrifera P11B4 male)
ATGTCTCCCCTTCACGTTCCACTCAATCGTGTTCGAAAACGGATTTGGGC
CCAGCGGGGCCTGACGCATCTTTCCCAGTCCCTCTTCGTCACCGCCTCGC
TCGCCTGTTTCTGGCTGCTCCTGTGCCGTCTCTTTCCGCTCCTCCGCTAT
GAAGTTGAAGGCGCAGCGACAATTCTGACCCTTGGCATCCTTACGGCCGG
CTGGCTCACCTATCGACAGCGTCCCGATATTAAGACGGCCGCCCTGGCCG
CCGACGAGCGGTTGGGCCTCCGCGAGCGGCTGACGTCCTCCCTGGAACTC
GCTGGGCTGGAGTCGCGCATGGTGACCGCCGTGCACCGCGACGCCCTGCA
CCATGTGGGACGCCTCAATGTAGGCCGTGATTTTCCCCTGCAACCTATGT
CTCCCCTTCACGTTCCACTCAATCGTGTTCGAAAACGGATTTGGGCCCAG
CGGGGCCTGACGCATCTTTCCCAGTCCCTCTTCGTCACCGCCTCGCTCGC
CTGTTTCTGGCTGCTCCTGTGCCGTCTCTTTCCGCTCCTCCGCTATGAAG
TTGAAGGCGCAGCGACAATTCTGACCCTTGGCATCCTTACGGCCGGCTGG
CTCACCTATCGACAGCGTCCCGATATTAAGACGGCCGCCCTGGCCGCCGA
CGAGCGGTTGGGCCTCCGCGAGCGGCTGACGTCCTCCCTGGAACTCGCTG
GGCTGGAGTCGCGCATGGTGACCGCCGTGCACCGCGACGCCCTGCACCAT
GTGGGACGCCTCAATGTAGGCCGTGATTTTCCCCTGCAACCT
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