mRNA_M-pyrifera_M_contig118359.3798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118359.3798.1
Unique NamemRNA_M-pyrifera_M_contig118359.3798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: A0A0R5K527_9VIRU (Putative minor capsid protein n=1 Tax=Qinghai Lake virophage TaxID=1516115 RepID=A0A0R5K527_9VIRU)

HSP 1 Score: 148 bits (373), Expect = 1.110e-39
Identity = 79/176 (44.89%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   22 LNPLIEVYFNPTLYAMFNSLPIQKKYLIDAGGNIIGPPNNPPYYQIMIDNFNGAKTIQGLFGQQTE-RFIETPQQYSTISEWSPVSSLVFTSSTLPVVVNQLSNPKLYQNNNLIQLSRQGNSFATIITDLVTDEQSYRGSLLYYPTAEYRWISLTTSQPISQIDIQVYWKSKVGKL 546
            +NP+I ++FN  L+A+FNS        ID G +I    N    +QI+ID++ G +TIQ  +G   E  + +T Q++STI  W+PVSS+VFTS+T+P+V NQLS P ++ +  ++       +FA IITDL T++Q Y+  LLY PTAEYR I LT ++P++ IDI+VYW+ K+G L
Sbjct:  205 VNPIINIFFNKPLFALFNSF-----LNIDFGVSITNGKN----HQIVIDSYLGTQTIQFPYGLDPELEYTQTFQEFSTIDTWTPVSSIVFTSNTIPIVSNQLSAPLIFNDGQIVVGDGNNCNFAQIITDLETNQQVYKPQLLYVPTAEYRRIDLTGNRPLTNIDIEVYWRDKLGGL 371          
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: A0A0A0RJU7_9VIRU (Putative minor capsid protein n=1 Tax=Yellowstone Lake virophage 6 TaxID=1557034 RepID=A0A0A0RJU7_9VIRU)

HSP 1 Score: 92.4 bits (228), Expect = 7.070e-19
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   34 IEVYFNPTLYAMFNSLPIQKKYLIDAGGNIIGPPNNPPYYQIMIDNFNGAKTIQ-GLFGQQTERFIETPQQYSTISEWSPVSSLVFTSSTLPVVVNQLSNPKLYQNNNLIQLSRQGNSFATIITDLVTDEQSYRGSLLYYPTAEYRWISLTTSQPISQIDIQVYWKSKVGKL 546
            I+VYFN  L  +F+S P       DA             +Q+ I++F+ A       FG       +  Q++STIS W+PV S+V  S+TLP+V N    P L  N    Q S   N  + +ITD V D   Y+  + Y P+ EYR +SL   +PI+ IDI V +K ++G+L
Sbjct:  190 IKVYFNQALSQLFSSFPFTINSFNDAYNR---------NFQLQINSFSVANQADYPSFGASDFTAYQLFQEFSTISAWNPVLSIVLVSNTLPIVPNNEGVPSLIVNGIYQQQSGNNNIQSQVITDFVADG-IYKPIITYIPSGEYRRLSLVGDKPINNIDITVMYKDRLGRL 351          
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: A0A6C0EW23_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EW23_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 3.150e-12
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:   34 IEVYFNPTLYAMFNSLPIQKKYLIDAGGNIIGPPNNPPYYQIMIDNFNGAKTIQ--GLFG-QQTERFIETPQQYSTISEWSPVSSLVFTSSTLPVVVNQLSNPKLYQNNNLIQLSRQGNSFATIITDLVTDEQS---YRGSLLYYPTAEYRWISLT--TSQPISQIDIQVYWKSKVGKL 546
            I +Y N  LY + +    Q  Y         GP  +   Y+  I      K I+   LF    T   I+  Q+YS+ + +SP+SS+VF +S +PV  +  + P +Y  N    L   GN+  ++ITD  + + +   Y GSL Y PTAEYR+ISL    S  +S ID+ V+WK     L
Sbjct:  196 ISIYTNTALYTLMSGF--QAFYY--------GPDLSGKNYKFKI-----TKDIRELNLFKIDDTYSVIQLYQEYSSGALFSPISSIVFCTSMIPVQPSNSTTPLIY--NGTGSLVTTGNNITSMITDFQSQDNNGYGYCGSLSYVPTAEYRFISLNQGASHKLSNIDLMVFWKDAYANL 357          
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: F2Y0L4_9VIRU (Putative minor capsid protein n=1 Tax=Organic Lake virophage TaxID=938080 RepID=F2Y0L4_9VIRU)

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-10
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:    1 TANQPTPLNPLIEVYFNPTLYAMFNSLPIQKKYLIDAGGNIIGPPNNPPYYQIMIDNFNGAKTIQ-------GLFGQQTERFIETPQQYSTISEWSPVSSLVFTSSTLPVVVNQLSNPKLYQN--------NNLIQLSRQGNSFATIITDLVTDEQSYRGSLLYYPTAEYRWISLTTSQPISQIDIQVYWKSKV 537
            T N  TP N ++ +Y N  LY +FNSLP   +             N    Y+I + +F      Q       G        +I   Q YST+  WSPV S+V TS+T+PV  +  S    +QN        +N+++L        T I  ++ +          YP    RWI++     +S I+I++Y++SK+
Sbjct:  186 TFNDDTP-NDVVNIYLNKPLYRLFNSLPFTHELTTFETMTTKVTANA---YKIKMSDFGNVAENQVFPPQSDGTIASVKVNYISVLQDYSTLDTWSPVESIVVTSNTIPVQSSNTSANHSFQNGSETISGSSNIVELELSDFKAGTPIPGVIYEPS--------YP----RWINMRNQSELSNINIEMYYRSKL 363          
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: A0A6G6XMR5_9VIRU (Putative minor capsid protein n=1 Tax=Dishui Lake virophage 3 TaxID=2704066 RepID=A0A6G6XMR5_9VIRU)

HSP 1 Score: 65.9 bits (159), Expect = 2.360e-9
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  226 IETPQQYSTISEWSPVSSLVFTSSTLPVVVNQLSNPKLYQ-----NNNLIQLSRQGNSFATIITDLVTDEQSYRGS---LLYYPTAEYRWISLTTSQPISQIDIQVYWKSKVGKL 546
            I  PQ++ST   +SP+SSLVF++S LPV    LS P ++       ++ ++ S   N  A ++TD      +   S   + Y PTAEYR + L  + P++ +++ V+WK K   L
Sbjct:  306 IIVPQEHSTTILFSPISSLVFSTSLLPVQNTLLSKPAIFNFYDGVTSSNLRSSGNNNVTAPVLTDFELQGATGTSSQTRITYTPTAEYRMLDLRGTTPVNAVEVSVFWKDKFSGL 420          
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Match: A0A0A0RK57_9VIRU (Putative minor capsid protein n=1 Tax=Yellowstone Lake virophage 5 TaxID=1557033 RepID=A0A0A0RK57_9VIRU)

HSP 1 Score: 64.7 bits (156), Expect = 6.050e-9
Identity = 61/199 (30.65%), Postives = 87/199 (43.72%), Query Frame = 1
Query:   13 PTPLNPLIEVYFNPTLYAMF-NSLPIQKKYL--IDAGGNIIGPPNNPPYY-QIMIDNFNGAKTIQG-------LFGQQTERFIETPQQYSTISE-WSPVSSLVFTSSTLPVVVNQLSNPKLYQNNNLIQLSRQGNS-------FATIITDLV----TDEQSYRGSLLYYPTAEYRWISLTTS-QPISQIDIQVYWKSKV 537
            P   +P   ++FN  ++ +F N L      L  ID   + +  P  P Y  +I   N N    +         +      R+    Q+Y +I   WSP+SS+VFTS+ LP+       P ++     +  S  GNS       F  IITDL+         YR  + Y PTA+YR      S Q I  IDIQVYWK ++
Sbjct:  253 PALTSPQFRLFFNTNMFGLFTNYLNTYYNTLLPIDGWQDGLTYPVQPGYVNEIQFPNKNYTNVLNHETAAADYVPAPDNVRYWINTQEYKSIDTLWSPISSIVFTSTLLPIKSEATGQPIVFGEQ--LGDSSIGNSAPTSQSAFQPIITDLILPMDNGAHDYRSFVYYAPTAQYRLTDFAPSKQEIRNIDIQVYWKYRL 449          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118359.3798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0R5K527_9VIRU1.110e-3944.89Putative minor capsid protein n=1 Tax=Qinghai Lake... [more]
A0A0A0RJU7_9VIRU7.070e-1935.47Putative minor capsid protein n=1 Tax=Yellowstone ... [more]
A0A6C0EW23_9ZZZZ3.150e-1233.52Uncharacterized protein n=1 Tax=viral metagenome T... [more]
F2Y0L4_9VIRU2.500e-1027.84Putative minor capsid protein n=1 Tax=Organic Lake... [more]
A0A6G6XMR5_9VIRU2.360e-933.91Putative minor capsid protein n=1 Tax=Dishui Lake ... [more]
A0A0A0RK57_9VIRU6.050e-930.65Putative minor capsid protein n=1 Tax=Yellowstone ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118359contigM-pyrifera_M_contig118359:3..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog543939.V19_SPTNK
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0019012
EggNOG OGs4QBPV@10239
Best tax levelViruses
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.085266-CDS-M-pyrifera_M_contig118359:2..5481622815703.085266-CDS-M-pyrifera_M_contig118359:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118359 3..548 +
1692277529.6424727-CDS-M-pyrifera_M_contig118359:2..5481692277529.6424727-CDS-M-pyrifera_M_contig118359:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118359 3..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118359.3798.1prot_M-pyrifera_M_contig118359.3798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118359 3..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118359.3798.1

>prot_M-pyrifera_M_contig118359.3798.1 ID=prot_M-pyrifera_M_contig118359.3798.1|Name=mRNA_M-pyrifera_M_contig118359.3798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
TANQPTPLNPLIEVYFNPTLYAMFNSLPIQKKYLIDAGGNIIGPPNNPPY
YQIMIDNFNGAKTIQGLFGQQTERFIETPQQYSTISEWSPVSSLVFTSST
LPVVVNQLSNPKLYQNNNLIQLSRQGNSFATIITDLVTDEQSYRGSLLYY
PTAEYRWISLTTSQPISQIDIQVYWKSKVGKL
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mRNA from alignment at M-pyrifera_M_contig118359:3..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118359.3798.1 ID=mRNA_M-pyrifera_M_contig118359.3798.1|Name=mRNA_M-pyrifera_M_contig118359.3798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118359:3..548+ (Macrocystis pyrifera P11B4 male)
ACAGCAAATCAACCAACCCCTTTAAATCCATTAATAGAAGTTTATTTCAA TCCTACACTTTATGCCATGTTTAATTCTCTACCTATTCAAAAAAAATATT TAATTGATGCGGGTGGTAATATCATTGGTCCTCCAAACAATCCTCCTTAT TACCAGATCATGATTGACAATTTTAATGGTGCTAAAACAATTCAAGGATT ATTCGGTCAACAAACTGAACGATTCATTGAAACACCACAACAATACAGTA CAATTTCTGAATGGTCCCCAGTTAGTTCACTTGTTTTCACATCTTCTACT TTGCCTGTTGTGGTTAATCAATTGTCTAACCCAAAACTTTATCAAAACAA TAATTTAATTCAATTATCAAGACAGGGTAACTCATTTGCTACTATTATTA CTGATTTAGTAACAGATGAACAAAGTTACAGGGGTTCTCTTCTTTATTAC CCTACAGCAGAATATAGGTGGATATCATTAACTACATCACAACCAATTAG TCAAATTGATATTCAAGTCTACTGGAAGTCAAAGGTAGGTAAATTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118359:3..548+

>mRNA_M-pyrifera_M_contig118359.3798.1 ID=mRNA_M-pyrifera_M_contig118359.3798.1|Name=mRNA_M-pyrifera_M_contig118359.3798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118359:3..548+ (Macrocystis pyrifera P11B4 male)
ACAGCAAATCAACCAACCCCTTTAAATCCATTAATAGAAGTTTATTTCAA
TCCTACACTTTATGCCATGTTTAATTCTCTACCTATTCAAAAAAAATATT
TAATTGATGCGGGTGGTAATATCATTGGTCCTCCAAACAATCCTCCTTAT
TACCAGATCATGATTGACAATTTTAATGGTGCTAAAACAATTCAAGGATT
ATTCGGTCAACAAACTGAACGATTCATTGAAACACCACAACAATACAGTA
CAATTTCTGAATGGTCCCCAGTTAGTTCACTTGTTTTCACATCTTCTACT
TTGCCTGTTGTGGTTAATCAATTGTCTAACCCAAAACTTTATCAAAACAA
TAATTTAATTCAATTATCAAGACAGGGTAACTCATTTGCTACTATTATTA
CTGATTTAGTAACAGATGAACAAAGTTACAGGGGTTCTCTTCTTTATTAC
CCTACAGCAGAATATAGGTGGATATCATTAACTACATCACAACCAATTAG
TCAAATTGATATTCAAGTCTACTGGAAGTCAAAGGTAGGTAAATTAACAG
CAAATCAACCAACCCCTTTAAATCCATTAATAGAAGTTTATTTCAATCCT
ACACTTTATGCCATGTTTAATTCTCTACCTATTCAAAAAAAATATTTAAT
TGATGCGGGTGGTAATATCATTGGTCCTCCAAACAATCCTCCTTATTACC
AGATCATGATTGACAATTTTAATGGTGCTAAAACAATTCAAGGATTATTC
GGTCAACAAACTGAACGATTCATTGAAACACCACAACAATACAGTACAAT
TTCTGAATGGTCCCCAGTTAGTTCACTTGTTTTCACATCTTCTACTTTGC
CTGTTGTGGTTAATCAATTGTCTAACCCAAAACTTTATCAAAACAATAAT
TTAATTCAATTATCAAGACAGGGTAACTCATTTGCTACTATTATTACTGA
TTTAGTAACAGATGAACAAAGTTACAGGGGTTCTCTTCTTTATTACCCTA
CAGCAGAATATAGGTGGATATCATTAACTACATCACAACCAATTAGTCAA
ATTGATATTCAAGTCTACTGGAAGTCAAAGGTAGGTAAATTA
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