mRNA_M-pyrifera_M_contig118320.3788.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118320.3788.1
Unique NamemRNA_M-pyrifera_M_contig118320.3788.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A7S4ILN7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ILN7_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 5.070e-56
Identity = 93/131 (70.99%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPGGQPGRRPE--PDNGGCC 411
             RRETF+HLS+WLEDAR+HSN +MTIMLIGNK+DL+ +RQVS++EGE FAKENGLVFLETSAKTA NV+EAF+ TA EIYRKI+DGVFDV+NETYGIK+G+QAG+     T    QPGRRP   P + GCC
Sbjct:   92 TRRETFSHLSSWLEDARKHSNKDMTIMLIGNKSDLDQKRQVSYQEGEAFAKENGLVFLETSAKTAENVQEAFVGTASEIYRKIKDGVFDVSNETYGIKVGAQAGTGGSNSTTV--QPGRRPNQPPPDDGCC 220
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A061RFG3_9CHLO (Ras-related protein Rab-2A n=6 Tax=core chlorophytes TaxID=2692248 RepID=A0A061RFG3_9CHLO)

HSP 1 Score: 175 bits (443), Expect = 6.650e-53
Identity = 91/130 (70.00%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPG-GQPGRRPEPDNGGCC 411
             RR+TFNHL+ WLEDARQH+N NMTIMLIGNK+DL HRR VS EEGE FAKE+GLVFLETSAKTA NVEEAFINTA++IY KI+ GVFDV+NE+YGIK+G  AG    +  +PG GQ G+R     GGCC
Sbjct:   89 TRRDTFNHLANWLEDARQHANPNMTIMLIGNKSDLNHRRAVSTEEGEAFAKEHGLVFLETSAKTAHNVEEAFINTARKIYEKIEQGVFDVSNESYGIKVGYGAGGSGPQTVKPGEGQSGQR---SGGGCC 215
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A6P3XRN6_DINQU (ras-related protein Rab-2 n=5 Tax=Aculeata TaxID=7434 RepID=A0A6P3XRN6_DINQU)

HSP 1 Score: 174 bits (442), Expect = 9.150e-53
Identity = 92/131 (70.23%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPGGQPGR--RPEPDNGGCC 411
             RRETFNHL+ WLEDARQHSNSNM IMLIGNK+DL++RR+V  EEGE FA+E+GLVF+ETSAKTAANVEEAFINTAKEIY KIQ+GVFD+NNE  GIKIG Q        T PGG PG   +     GGCC
Sbjct:   89 TRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDNRREVRREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQH-----SPTSPGGLPGTGGQGSAQGGGCC 214
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A250XE48_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XE48_9CHLO)

HSP 1 Score: 174 bits (441), Expect = 1.220e-52
Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPGGQPGRRPEPDNGGCC 411
             RRETFNHL++WLEDARQH+N NMTIMLIGNK+DL HRR V+ EEGE+FAKE+GL+FLETSA+TA NVE+AFINTA+EIYRKIQDGVFDV+NE+YGIK+G  AG+      + G +P +      GGCC
Sbjct:   89 TRRETFNHLASWLEDARQHANPNMTIMLIGNKSDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEDAFINTAREIYRKIQDGVFDVSNESYGIKVGYGAGASGQPVAKVGEEPKK-----TGGCC 212
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A7S3FHX7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FHX7_9VIRI)

HSP 1 Score: 174 bits (440), Expect = 1.840e-52
Identity = 86/114 (75.44%), Postives = 98/114 (85.96%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPG 366
             RRETFNHL++WLEDARQH+NSNMTIMLIGNK DL HRRQVS EEGE+FAKENGL+F+ETSAKTAANVEEAF+ TA +IY KIQ+GVFDV+NE+YGIK+G  AG   G    PG
Sbjct:   89 TRRETFNHLASWLEDARQHANSNMTIMLIGNKADLNHRRQVSTEEGEQFAKENGLIFMETSAKTAANVEEAFVGTATKIYEKIQEGVFDVSNESYGIKVGYGAGGAGGGTINPG 202
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A150GWP3_GONPE (RABB1 protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GWP3_GONPE)

HSP 1 Score: 172 bits (435), Expect = 2.470e-52
Identity = 83/114 (72.81%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPG 366
             RRETFNHL++WLEDARQH+N NMTIMLIGNK+DL HRR V+ EEGE+FA+E+GL+FLETSA+TA NVEEAFINTAKEIY+KIQDG+FDV+NE+YGIK+G  AG+   +  +PG
Sbjct:   43 TRRETFNHLASWLEDARQHANPNMTIMLIGNKSDLTHRRAVTTEEGEQFAREHGLIFLETSARTAYNVEEAFINTAKEIYKKIQDGIFDVSNESYGIKVGYGAGNAGPQTVKPG 156
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A8C4ZFF0_GADMO (RAB2A, member RAS oncogene family n=2 Tax=Bilateria TaxID=33213 RepID=A0A8C4ZFF0_GADMO)

HSP 1 Score: 173 bits (439), Expect = 3.130e-52
Identity = 90/127 (70.87%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQ--------AGSRPGEQTRPGGQPGR 381
             RR+TFNHL+ WLEDARQHSNSNM IMLIGNK+DLE RR+V  EEGE FA+E+GL+F+ETSAKTA+NVEEAFINTAKEIY KIQ+GVFD+NNE  GIKIG Q        AGS+ G+Q+R GG  GR
Sbjct:   79 TRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHPTTSSTLAGSQGGQQSRGGGAAGR 205
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: B3S6V0_TRIAD (Uncharacterized protein n=51 Tax=Eumetazoa TaxID=6072 RepID=B3S6V0_TRIAD)

HSP 1 Score: 173 bits (438), Expect = 3.280e-52
Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPGGQPGRRPEPDNGGCC 411
             RRETFNHL+ WLEDARQHSNSNM IMLIGNK+DLE RR V  EEGE FA+E+GL+F+ETSAKTAANVEEAFINTAKEIY+KIQDG FD+NNE  GIK+G Q  S P         P R P+  +GGCC
Sbjct:   89 TRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGAFDINNEANGIKLGPQNPSNPSTSV-----PDRPPQ--SGGCC 210
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: A0A836EMU4_9HYME (RAB2 protein (Fragment) n=1 Tax=Acromyrmex insinuator TaxID=230686 RepID=A0A836EMU4_9HYME)

HSP 1 Score: 171 bits (433), Expect = 3.300e-52
Identity = 91/130 (70.00%), Postives = 103/130 (79.23%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQ-AGSRPGEQTRPGGQPGRRPEPDNGGCC 411
             RRETFNHL+ WLEDARQHSNSNM IMLIGNK+DL+ RR+V  EEGE FA+E+GLVF+ETSAKTAANVEEAFINTAKEIY KIQ+GVFD+NNE  GIKIG Q + + PG     GGQ   +     GGCC
Sbjct:   29 TRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVRREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHSPTSPGGLAGTGGQGSAQ----GGGCC 154
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BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 n=14 Tax=CS clade TaxID=2812636 RepID=YPTV4_VOLCA)

HSP 1 Score: 173 bits (438), Expect = 3.590e-52
Identity = 88/129 (68.22%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:   25 VRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVSFEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNNETYGIKIGSQAGSRPGEQTRPGGQPGRRPEPDNGGCC 411
             RRETFNHL++WLEDARQH+N NMTIMLIGNK DL HRR V+ EEGE+FAKE+GL+FLETSA+TA NVEEAFINTAKEIY+KIQDGVFDV+NE+YGIK+G  AG+   +  +PG    R+    +  CC
Sbjct:   89 TRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARK----SSSCC 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118320.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4ILN7_9EUKA5.070e-5670.99Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A061RFG3_9CHLO6.650e-5370.00Ras-related protein Rab-2A n=6 Tax=core chlorophyt... [more]
A0A6P3XRN6_DINQU9.150e-5370.23ras-related protein Rab-2 n=5 Tax=Aculeata TaxID=7... [more]
A0A250XE48_9CHLO1.220e-5268.22Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S3FHX7_9VIRI1.840e-5275.44Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A150GWP3_GONPE2.470e-5272.81RABB1 protein n=1 Tax=Gonium pectorale TaxID=33097... [more]
A0A8C4ZFF0_GADMO3.130e-5270.87RAB2A, member RAS oncogene family n=2 Tax=Bilateri... [more]
B3S6V0_TRIAD3.280e-5269.77Uncharacterized protein n=51 Tax=Eumetazoa TaxID=6... [more]
A0A836EMU4_9HYME3.300e-5270.00RAB2 protein (Fragment) n=1 Tax=Acromyrmex insinua... [more]
YPTV4_VOLCA3.590e-5268.22GTP-binding protein yptV4 n=14 Tax=CS clade TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118320contigM-pyrifera_M_contig118320:54..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score175.3
Seed ortholog evalue2e-41
Seed eggNOG ortholog6500.XP_005101961.1
Preferred nameRAB2A
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categorymitochondrion
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006464,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006996,GO:0007030,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0030424,GO:0031090,GO:0031594,GO:0031982,GO:0031984,GO:0032482,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033267,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0046907,GO:0048193,GO:0048471,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061175,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:0097458,GO:0098588,GO:0098791,GO:0098793,GO:0098794,GO:0098827,GO:0098975,GO:0099175,GO:0120025,GO:0120038,GO:0150034,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.GTPase activity
EggNOG OGs38D6D@33154,3BB4T@33208,3CV5J@33213,COG1100@1,KOG0098@2759
Ec32 ortholog descriptionRab2A, RAB family GTPase
Ec32 orthologEc-25_000850.1
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.6117034-CDS-M-pyrifera_M_contig118320:53..4671622815702.6117034-CDS-M-pyrifera_M_contig118320:53..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118320 54..467 -
1692277529.4428103-CDS-M-pyrifera_M_contig118320:53..4671692277529.4428103-CDS-M-pyrifera_M_contig118320:53..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118320 54..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118320.3788.1prot_M-pyrifera_M_contig118320.3788.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118320 54..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118320.3788.1

>prot_M-pyrifera_M_contig118320.3788.1 ID=prot_M-pyrifera_M_contig118320.3788.1|Name=mRNA_M-pyrifera_M_contig118320.3788.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MVARRLTRVRRETFNHLSAWLEDARQHSNSNMTIMLIGNKNDLEHRRQVS
FEEGERFAKENGLVFLETSAKTAANVEEAFINTAKEIYRKIQDGVFDVNN
ETYGIKIGSQAGSRPGEQTRPGGQPGRRPEPDNGGCC*
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mRNA from alignment at M-pyrifera_M_contig118320:54..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118320.3788.1 ID=mRNA_M-pyrifera_M_contig118320.3788.1|Name=mRNA_M-pyrifera_M_contig118320.3788.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig118320:54..467- (Macrocystis pyrifera P11B4 male)
ATGGTGGCACGACGACTGACGAGGGTAAGACGCGAGACATTCAACCACCT
GAGCGCTTGGCTGGAGGACGCGCGACAGCACTCGAACTCGAACATGACGA
TCATGCTGATCGGCAACAAGAACGACCTCGAGCACCGCAGGCAGGTGAGC
TTCGAGGAGGGCGAGCGCTTTGCGAAGGAGAACGGCCTGGTCTTCCTCGA
GACCAGCGCCAAGACTGCGGCCAACGTCGAGGAGGCCTTCATCAACACGG
CCAAGGAGATCTACCGCAAGATCCAGGACGGCGTCTTCGACGTCAACAAC
GAAACCTACGGCATCAAGATCGGCTCGCAGGCAGGCTCGCGCCCCGGCGA
GCAGACGCGCCCCGGCGGCCAGCCCGGCAGGCGGCCCGAGCCCGACAACG
GCGGCTGCTGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118320:54..467-

>mRNA_M-pyrifera_M_contig118320.3788.1 ID=mRNA_M-pyrifera_M_contig118320.3788.1|Name=mRNA_M-pyrifera_M_contig118320.3788.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig118320:54..467- (Macrocystis pyrifera P11B4 male)
ATGGTGGCACGACGACTGACGAGGGTAAGACGCGAGACATTCAACCACCT
GAGCGCTTGGCTGGAGGACGCGCGACAGCACTCGAACTCGAACATGACGA
TCATGCTGATCGGCAACAAGAACGACCTCGAGCACCGCAGGCAGGTGAGC
TTCGAGGAGGGCGAGCGCTTTGCGAAGGAGAACGGCCTGGTCTTCCTCGA
GACCAGCGCCAAGACTGCGGCCAACGTCGAGGAGGCCTTCATCAACACGG
CCAAGGAGATCTACCGCAAGATCCAGGACGGCGTCTTCGACGTCAACAAC
GAAACCTACGGCATCAAGATCGGCTCGCAGGCAGGCTCGCGCCCCGGCGA
GCAGACGCGCCCCGGCGGCCAGCCCGGCAGGCGGCCCGAGCCCGACAACG
GCGGCTGCTGCTAGATGGTGGCACGACGACTGACGAGGGTAAGACGCGAG
ACATTCAACCACCTGAGCGCTTGGCTGGAGGACGCGCGACAGCACTCGAA
CTCGAACATGACGATCATGCTGATCGGCAACAAGAACGACCTCGAGCACC
GCAGGCAGGTGAGCTTCGAGGAGGGCGAGCGCTTTGCGAAGGAGAACGGC
CTGGTCTTCCTCGAGACCAGCGCCAAGACTGCGGCCAACGTCGAGGAGGC
CTTCATCAACACGGCCAAGGAGATCTACCGCAAGATCCAGGACGGCGTCT
TCGACGTCAACAACGAAACCTACGGCATCAAGATCGGCTCGCAGGCAGGC
TCGCGCCCCGGCGAGCAGACGCGCCCCGGCGGCCAGCCCGGCAGGCGGCC
CGAGCCCGACAACGGCGGCTGCTGCTAG
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