mRNA_M-pyrifera_M_contig117665.3648.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117665.3648.1
Unique NamemRNA_M-pyrifera_M_contig117665.3648.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A6F9DPH4_9ASCI (Prefoldin subunit 2-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPH4_9ASCI)

HSP 1 Score: 55.5 bits (132), Expect = 5.480e-8
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 RRVSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            R V + +S + G RKCYR +GDVLVE +V  +LP + K RE I  L E L K L +K K    F+ K+
Sbjct:   40 RAVIDALSEVSGNRKCYRLIGDVLVERTVGDVLPALTKNREQISMLTEDLNKQLAEKGKELNDFRQKH 107          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A2G8KD47_STIJA (Putative prefoldin subunit 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KD47_STIJA)

HSP 1 Score: 54.3 bits (129), Expect = 8.520e-8
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RRVSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            R V E +  +DGERKC R VG +LVE +V  +LP +E  +E I+KL+E L K ++ K+     ++ KY
Sbjct:   14 RLVIETLKEVDGERKCCRLVGGILVERTVQEVLPALEHNKEQIQKLIESLGKQIQSKSAELTEYREKY 81          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A7S4NTF0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NTF0_GUITH)

HSP 1 Score: 54.3 bits (129), Expect = 9.460e-8
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            V E +S M+GERKCYR VG VL E +VST+LP V++  + ++ L + L   L+ K K    FQ K+
Sbjct:   38 VVETLSKMEGERKCYRMVGGVLTERTVSTVLPAVKENMDKLQALCDDLYARLQKKEKEMQEFQAKH 103          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A383W5V6_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W5V6_TETOB)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-7
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            V +Q+  MD  R+CYR +GDVLVE +V+  LP V++ RE +  +++QL+  L  + KA  AFQ +Y
Sbjct:   43 VLKQLEPMDKGRRCYRMIGDVLVERTVAETLPAVQRNREGLGNVMKQLQAQLEAQQKALAAFQQQY 108          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A2G8JNW9_STIJA (Putative prefoldin subunit 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JNW9_STIJA)

HSP 1 Score: 54.3 bits (129), Expect = 1.640e-7
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RRVSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            R V E +  +DGERKC R VG +LVE +V  +LP +E  +E I+KL+E L K ++ K+     ++ KY
Sbjct:   48 RLVIETLKEVDGERKCCRLVGGILVERTVQEVLPALEHNKEQIQKLIESLGKQIQSKSAELTEYREKY 115          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A8J9WQS5_9CHLO (Probable prefoldin subunit 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WQS5_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.880e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   28 MDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            MDG+RKCYR VG++LVE +V+ ++P V+  +E ++ ++E+L K L  K K    FQ KY
Sbjct:    1 MDGDRKCYRVVGEILVERTVAEVVPAVKGNKEQLDTIVERLVKQLDTKKKELSDFQEKY 59          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: E1ZGR3_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR3_CHLVA)

HSP 1 Score: 52.4 bits (124), Expect = 5.430e-7
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            V + +  +D ERKC+R VG+VLVE +V+ +LP V+K R+ +  L+   +K L  K K  LA+Q +Y
Sbjct:   39 VIKTLEPLDAERKCFRLVGEVLVERTVADVLPAVKKTRDGLAGLVSTYEKQLAAKQKEVLAYQQRY 104          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: I0ZB07_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZB07_COCSC)

HSP 1 Score: 51.2 bits (121), Expect = 2.020e-6
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            V + +  MDG+RKCYR VG++LVE +V+ + P V+  +E ++ ++E+L K L  K K    FQ +Y
Sbjct:   43 VLKALEPMDGDRKCYRVVGEILVERTVAEVKPAVKGNKEQLDAVVERLLKQLEVKKKDLSDFQERY 108          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A0C9SA75_AMBAM (Putative molecular chaperone prefoldin subunit 2 (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9SA75_AMBAM)

HSP 1 Score: 50.1 bits (118), Expect = 3.600e-6
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDK 171
            V+E +  +DG+R+CYR VG VLVE +V  ILP VE+ RE + K +E + + + D+
Sbjct:   55 VAEALQKVDGDRRCYRMVGGVLVERTVKDILPAVERNRENLSKSVELMNEKIVDR 109          
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Match: A0A059LKJ3_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LKJ3_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 4.150e-6
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 VSEQMSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRDKAKARLAFQTKY 204
            V + +  +D +R+C+R +GDV+VE S  T+LPEV + R  +  L++  ++ L +K +  LAFQ KY
Sbjct:   42 VIKTLEKVDDDRRCHRLIGDVMVERSKKTVLPEVVENRNNLAALVKTYEEKLEEKQREVLAFQKKY 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117665.3648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6F9DPH4_9ASCI5.480e-845.59Prefoldin subunit 2-like n=1 Tax=Phallusia mammill... [more]
A0A2G8KD47_STIJA8.520e-842.65Putative prefoldin subunit 2 n=1 Tax=Stichopus jap... [more]
A0A7S4NTF0_GUITH9.460e-845.45Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A383W5V6_TETOB1.500e-743.94Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A2G8JNW9_STIJA1.640e-742.65Putative prefoldin subunit 2 n=1 Tax=Stichopus jap... [more]
A0A8J9WQS5_9CHLO1.880e-745.76Probable prefoldin subunit 2 n=1 Tax=Coccomyxa sp.... [more]
E1ZGR3_CHLVA5.430e-742.42Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
I0ZB07_COCSC2.020e-640.91Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A0C9SA75_AMBAM3.600e-645.45Putative molecular chaperone prefoldin subunit 2 (... [more]
A0A059LKJ3_9CHLO4.150e-639.39Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117665contigM-pyrifera_M_contig117665:350..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.2156203-UTR-M-pyrifera_M_contig117665:349..3671622815694.2156203-UTR-M-pyrifera_M_contig117665:349..367Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117665 350..367 +
1692277525.2116628-UTR-M-pyrifera_M_contig117665:349..3671692277525.2116628-UTR-M-pyrifera_M_contig117665:349..367Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117665 350..367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.2291195-CDS-M-pyrifera_M_contig117665:367..5531622815694.2291195-CDS-M-pyrifera_M_contig117665:367..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117665 368..553 +
1692277525.221992-CDS-M-pyrifera_M_contig117665:367..5531692277525.221992-CDS-M-pyrifera_M_contig117665:367..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117665 368..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117665.3648.1prot_M-pyrifera_M_contig117665.3648.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117665 368..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117665.3648.1

>prot_M-pyrifera_M_contig117665.3648.1 ID=prot_M-pyrifera_M_contig117665.3648.1|Name=mRNA_M-pyrifera_M_contig117665.3648.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MSTMDGERKCYRRVGDVLVEGSVSTILPEVEKAREMIEKLLEQLKKDLRD
KAKARLAFQTKY
back to top

mRNA from alignment at M-pyrifera_M_contig117665:350..553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117665.3648.1 ID=mRNA_M-pyrifera_M_contig117665.3648.1|Name=mRNA_M-pyrifera_M_contig117665.3648.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig117665:350..553+ (Macrocystis pyrifera P11B4 male)
AGGCGGGTTTCGGAGCAAATGTCGACGATGGATGGGGAGAGAAAGTGTTA TCGACGAGTAGGGGATGTGTTGGTGGAAGGGAGCGTGTCTACAATCCTCC CAGAGGTGGAGAAAGCGCGAGAGATGATTGAAAAGCTGCTCGAGCAGCTC AAGAAAGACTTGCGTGACAAAGCCAAAGCACGCCTTGCATTCCAAACAAA GTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117665:350..553+

>mRNA_M-pyrifera_M_contig117665.3648.1 ID=mRNA_M-pyrifera_M_contig117665.3648.1|Name=mRNA_M-pyrifera_M_contig117665.3648.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig117665:350..553+ (Macrocystis pyrifera P11B4 male)
ATGTCGACGATGGATGGGGAGAGAAAGTGTTATCGACGAGTAGGGGATGT
GTTGGTGGAAGGGAGCGTGTCTACAATCCTCCCAGAGGTGGAGAAAGCGC
GAGAGATGATTGAAAAGCTGCTCGAGCAGCTCAAGAAAGACTTGCGTGAC
AAAGCCAAAGCACGCCTTGCATTCCAAACAAAGTACATGTCGACGATGGA
TGGGGAGAGAAAGTGTTATCGACGAGTAGGGGATGTGTTGGTGGAAGGGA
GCGTGTCTACAATCCTCCCAGAGGTGGAGAAAGCGCGAGAGATGATTGAA
AAGCTGCTCGAGCAGCTCAAGAAAGACTTGCGTGACAAAGCCAAAGCACG
CCTTGCATTCCAAACAAAGTAC
back to top