mRNA_M-pyrifera_M_contig117514.3627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117514.3627.1
Unique NamemRNA_M-pyrifera_M_contig117514.3627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 1.850e-35
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP+GGCWILK+++    ++  G++WQ+L+FAAIGE      VVG+ +A R+++DML+VW  D+ D + RF + E+LK+ L L   +++EYK H  S+++ S FRNA  +++
Sbjct:   76 NLYLFRDQPNCAPMWEAFPQGGCWILKIKK---KANVLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSDDSTRFEIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVF 200          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.910e-35
Identity = 59/132 (44.70%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMYVDKS 390
            NL  FR    CAPMWE FP GGCWILK+++    ++  G++WQ+L+FAAIGE  G   VVG+ +A R+++DML+VW  D+ + + RF + E+LK+ L L   +++EYK H  S+++ S FRNA ++++   S
Sbjct:   73 NLYMFRDLPKCAPMWEAFPHGGCWILKIKK---KANVLGKMWQDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNAKSYVFATTS 201          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: A0A067BS98_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BS98_SAPPC)

HSP 1 Score: 128 bits (321), Expect = 1.440e-34
Identity = 57/128 (44.53%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 NLCCFRSG--CAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP GGCWILK+++    ++  G++WQ+L FAA+GE      VVG+ +A R+++DM++VW  D+ D +ARF + E+LK+ L L   +++EYK H  S+++ S FRNA  +++
Sbjct:   75 NLYLFRDAPNCAPMWEAFPNGGCWILKIKK---KANVLGKMWQDLCFAAVGEAFETLNVVGIAMAIRSKEDMISVWNADNTDDSARFAIGEKLKELLMLDSNTLIEYKFHSNSIRDMSTFRNAKPYVF 199          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: D0N871_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N871_PHYIT)

HSP 1 Score: 128 bits (321), Expect = 1.560e-34
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP+GGCWILK+++    ++  G++WQ+L+FAAIGE      VVG+ +A R+++DML+VW  D+ D   RF + E+LK+ L L   ++VEYK H  S+++ S FRNA  +++
Sbjct:   73 NLYLFRDQPNCAPMWEAFPQGGCWILKIKK---KANVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVF 197          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 128 bits (321), Expect = 2.050e-34
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP+GGCWILK+++    ++  G++WQ+L+FAAIGE      VVG+ +A R+++DML+VW  D+ D   RF + E+LK+ L L   ++VEYK H  S+++ S FRNA  +++
Sbjct:   83 NLYLFRDQPNCAPMWEAFPQGGCWILKIKK---KANVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVF 207          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: H3GYW7_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GYW7_PHYRM)

HSP 1 Score: 128 bits (322), Expect = 2.200e-34
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP+GGCWILK+++    ++  G++WQ+L+FAA+GE      VVG+ +A R+++DML+VW  D+ D + RF + E+LK+ L L   ++VEYK H  S+++ S FRNA  +++
Sbjct:   99 NLYLFRDQPNCAPMWEAFPQGGCWILKIKK---KANVLGKMWQDLVFAALGEAFEELDVVGIAMAIRSKEDMLSVWNADNSDDSTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVF 223          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: D0P4V5_PHYIT (Eukaryotic initiation factor 4E, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0P4V5_PHYIT)

HSP 1 Score: 128 bits (321), Expect = 2.730e-34
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP+GGCWILK+++    ++  G++WQ+L+FAAIGE      VVG+ +A R+++DML+VW  D+ D   RF + E+LK+ L L   ++VEYK H  S+++ S FRNA  +++
Sbjct:   94 NLYLFRDQPNCAPMWEAFPQGGCWILKIKK---KANVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVF 218          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.130e-33
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            NL  FR    CAPMWE FP GGCWILK+++    ++  G++WQ+LLFA IGE      VVG+ +A R+++DM++VW  D+ D   RF + E+LK+ L L   +++EYK H  S+++ S FRNA  +++
Sbjct:   72 NLYLFRDQPNCAPMWEAFPNGGCWILKIKK---KANVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVF 196          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.180e-33
Identity = 55/130 (42.31%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 NLCCFRS--GCAPMWEDFPRGGCWILKVRR--GDRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            N+  FR   G  PMWE +P GGCWIL++R+  G   +S  G++WQ+L+ A +GE      VVG+ +A R+R+D+L+VW  D+ +   RF + ERLK+ L L  ++++EYK HQ ++++ S FRNA A+ +
Sbjct:   86 NVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCF 215          
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Match: A0A7S1CD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD67_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.430e-33
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 NLCCFRSGCAPMWEDFPRGGCWILKVRRG-DRTSSPTGRLWQELLFAAIGEQLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADASVVEYKPHQRSLKEKSGFRNADAFMY 378
            N   FR G  PMWE +P GGCWI+K+RR  D +     +LWQ+L+F  IGEQ     VVG+ LA R ++DML+VW  D    A RF + E LK+ L L   +++EYK H RS+++KS + NA A++Y
Sbjct:  111 NYYMFREGDFPMWESYPEGGCWIIKIRRSSDASGGVLSKLWQDLVFGTIGEQFKEPSVVGITLARRPKEDMLSVWNSDGSP-AVRFSIGEELKRILALEPGTMIEYKFHSRSMQDKSTYSNAQAYVY 236          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117514.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WZ97_GLOUD1.850e-3545.31Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
F0W9A8_9STRA2.910e-3544.70Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]
A0A067BS98_SAPPC1.440e-3444.53Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
D0N871_PHYIT1.560e-3446.09Eukaryotic initiation factor 4E, putative n=1 Tax=... [more]
W2PGT1_PHYPN2.050e-3446.09Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
H3GYW7_PHYRM2.200e-3445.31Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0P4V5_PHYIT2.730e-3446.09Eukaryotic initiation factor 4E, putative n=2 Tax=... [more]
A0A024TXL0_9STRA1.130e-3344.53Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
D7FIH1_ECTSI2.180e-3342.31Eukaryotic translation initiation factor 4E like2 ... [more]
A0A7S1CD67_9STRA2.430e-3346.46Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117514contigM-pyrifera_M_contig117514:1..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog115417.EPrPW00000017885
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Eukaryotic initiation factor 4E
EggNOG OGs1MBZN@121069,COG5053@1,KOG1669@2759
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.2630963-CDS-M-pyrifera_M_contig117514:0..4201622815693.2630963-CDS-M-pyrifera_M_contig117514:0..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117514 1..420 +
1692277524.704133-CDS-M-pyrifera_M_contig117514:0..4201692277524.704133-CDS-M-pyrifera_M_contig117514:0..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117514 1..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117514.3627.1prot_M-pyrifera_M_contig117514.3627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117514 1..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117514.3627.1

>prot_M-pyrifera_M_contig117514.3627.1 ID=prot_M-pyrifera_M_contig117514.3627.1|Name=mRNA_M-pyrifera_M_contig117514.3627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
NLCCFRSGCAPMWEDFPRGGCWILKVRRGDRTSSPTGRLWQELLFAAIGE
QLGGHQVVGVQLAARARDDMLAVWTRDDQDYAARFGVSERLKKCLGLADA
SVVEYKPHQRSLKEKSGFRNADAFMYVDKSTAAATAAALS
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mRNA from alignment at M-pyrifera_M_contig117514:1..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117514.3627.1 ID=mRNA_M-pyrifera_M_contig117514.3627.1|Name=mRNA_M-pyrifera_M_contig117514.3627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig117514:1..420+ (Macrocystis pyrifera P11B4 male)
AACCTGTGCTGTTTCCGCTCCGGGTGTGCTCCCATGTGGGAGGATTTCCC TCGAGGTGGCTGCTGGATTCTCAAGGTGCGACGAGGCGACCGCACTTCCA GCCCCACTGGTCGGCTGTGGCAAGAGCTCTTGTTCGCAGCGATCGGAGAG CAATTGGGGGGCCATCAGGTGGTGGGCGTGCAGCTGGCTGCTCGGGCCAG AGACGACATGCTGGCGGTGTGGACAAGGGACGACCAAGACTATGCCGCTC GGTTTGGGGTCTCAGAGAGGCTCAAGAAATGCCTCGGTCTCGCCGATGCT TCCGTTGTGGAATACAAACCACACCAACGGTCTCTCAAAGAAAAGTCGGG ATTCCGAAATGCCGACGCCTTCATGTACGTTGACAAATCCACAGCCGCTG CGACTGCCGCTGCTCTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117514:1..420+

>mRNA_M-pyrifera_M_contig117514.3627.1 ID=mRNA_M-pyrifera_M_contig117514.3627.1|Name=mRNA_M-pyrifera_M_contig117514.3627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig117514:1..420+ (Macrocystis pyrifera P11B4 male)
AACCTGTGCTGTTTCCGCTCCGGGTGTGCTCCCATGTGGGAGGATTTCCC
TCGAGGTGGCTGCTGGATTCTCAAGGTGCGACGAGGCGACCGCACTTCCA
GCCCCACTGGTCGGCTGTGGCAAGAGCTCTTGTTCGCAGCGATCGGAGAG
CAATTGGGGGGCCATCAGGTGGTGGGCGTGCAGCTGGCTGCTCGGGCCAG
AGACGACATGCTGGCGGTGTGGACAAGGGACGACCAAGACTATGCCGCTC
GGTTTGGGGTCTCAGAGAGGCTCAAGAAATGCCTCGGTCTCGCCGATGCT
TCCGTTGTGGAATACAAACCACACCAACGGTCTCTCAAAGAAAAGTCGGG
ATTCCGAAATGCCGACGCCTTCATGTACGTTGACAAATCCACAGCCGCTG
CGACTGCCGCTGCTCTCTCCAACCTGTGCTGTTTCCGCTCCGGGTGTGCT
CCCATGTGGGAGGATTTCCCTCGAGGTGGCTGCTGGATTCTCAAGGTGCG
ACGAGGCGACCGCACTTCCAGCCCCACTGGTCGGCTGTGGCAAGAGCTCT
TGTTCGCAGCGATCGGAGAGCAATTGGGGGGCCATCAGGTGGTGGGCGTG
CAGCTGGCTGCTCGGGCCAGAGACGACATGCTGGCGGTGTGGACAAGGGA
CGACCAAGACTATGCCGCTCGGTTTGGGGTCTCAGAGAGGCTCAAGAAAT
GCCTCGGTCTCGCCGATGCTTCCGTTGTGGAATACAAACCACACCAACGG
TCTCTCAAAGAAAAGTCGGGATTCCGAAATGCCGACGCCTTCATGTACGT
TGACAAATCCACAGCCGCTGCGACTGCCGCTGCTCTCTCC
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