mRNA_M-pyrifera_M_contig11745.3607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11745.3607.1
Unique NamemRNA_M-pyrifera_M_contig11745.3607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A6H5KU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU30_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.410e-31
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRMSPDLAGMDNLVDLDLRHNR 237
            RN+PRSKAQRLVDEAEDSV GARP +LDLS+L M RVTSRVY LDWL+ LDLS NRL R+S DLAGM+NLVD++ RHNR
Sbjct:  317 RNFPRSKAQRLVDEAEDSVDGARPEILDLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISSDLAGMENLVDVNFRHNR 395          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.040e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLD 153
            RN+PRSKAQRLVDEAEDS+ GARP +LDLS+L M RVTSRVY LDWL+ LD
Sbjct:  300 RNFPRSKAQRLVDEAEDSIDGARPEILDLSKLDMDRVTSRVYRLDWLQRLD 350          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A1V9YMR4_9STRA (WW domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMR4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-8
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPAL-LDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            RNYPRSKAQ +VD AED      PAL LD+S L  ++VT RV++LD LE L L  NRL R+
Sbjct:  185 RNYPRSKAQLIVDAAEDLELENTPALELDMSNLQALKVTGRVWNLDNLERLILKDNRLTRI 245          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A485LRK3_9STRA (Aste57867_24842 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRK3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.600e-8
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPAL-LDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRMSPDLAGMDNLVDLDLRHN 234
            R +PRSKAQ +VD AED+       L L+L +LG  R++SRV++L+ L+ L LSRN+L R+   +  +  L  LD+ HN
Sbjct:  240 RRFPRSKAQLIVDAAEDAELDDVAVLELELRDLGAARISSRVWNLEHLQRLVLSRNKLTRLPSAIQDLTAL--LDVSHN 316          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A225WBH8_9STRA (TKL protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBH8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.110e-7
Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            R++PRSKAQ++VD+AED  AG    LLD+S L + +++SR+++L +L+ L LS N L R+
Sbjct:  206 RSFPRSKAQQIVDDAED--AGKNVQLLDMSGLDVWKLSSRIWNLQFLKKLVLSNNFLTRI 263          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A7S3NJI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.190e-6
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRMSPD 189
            R +PRSK Q LVD AED+  GA   +L    LG+ +++ R++ LD L  LDLS N+L ++  D
Sbjct:   23 REWPRSKVQTLVDIAEDNPNGATELIL--KNLGLTKLSFRIFALDTLRVLDLSENKLCKLPKD 83          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: G4ZH24_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZH24_PHYSP)

HSP 1 Score: 53.9 bits (128), Expect = 1.520e-6
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            R YPRSKAQ +VD AED  AG+   LLD+S L   +++SR+++L +L+ L LS N L R+
Sbjct:  257 RKYPRSKAQLIVDAAED--AGSNAQLLDMSGLDAWKLSSRIWNLQFLKKLVLSHNCLTRI 314          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A5D6YFK4_9STRA (Leucine-rich repeat and WD repeat-containing protein 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFK4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.860e-6
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            R  PRSKAQ  VDEAED  AG   A LDLS L   +++SR+++L +L  L LS+N+L R+
Sbjct:  716 RRLPRSKAQARVDEAED--AGKDGAELDLSALNAWKLSSRIWNLQYLRTLVLSKNQLSRI 773          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A662XK62_9STRA (WW domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XK62_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.250e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            R +PRSKAQ+LVD AED  AG +   L+L  L   +V+SRV++L +L  L L+ N L R+
Sbjct:  193 RRFPRSKAQQLVDAAED--AGDQAETLELQGLNAFKVSSRVWNLQFLRTLSLAHNLLARI 250          
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Match: A0A8J5LZC2_9STRA (SNRNP27 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5LZC2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.350e-5
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGLDLSRNRLMRM 180
            R YPRSKAQ++VD AED+    +  LLD+S L   +++SR+++L +L+ L LS N L R+
Sbjct:  275 RKYPRSKAQQIVDAAEDA---EQAQLLDMSGLDAWKLSSRIWNLPYLKKLVLSNNYLTRI 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11745.3607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KU30_9PHAE1.410e-3177.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE76_ECTSI1.040e-1678.43Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A1V9YMR4_9STRA1.390e-857.38WW domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A485LRK3_9STRA2.600e-844.30Aste57867_24842 protein n=1 Tax=Aphanomyces stella... [more]
A0A225WBH8_9STRA8.110e-748.33TKL protein kinase n=1 Tax=Phytophthora megakarya ... [more]
A0A7S3NJI6_9STRA1.190e-644.44Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
G4ZH24_PHYSP1.520e-650.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A5D6YFK4_9STRA2.860e-651.67Leucine-rich repeat and WD repeat-containing prote... [more]
A0A662XK62_9STRA7.250e-648.33WW domain-containing protein n=2 Tax=Nothophytopht... [more]
A0A8J5LZC2_9STRA1.350e-546.67SNRNP27 domain-containing protein n=1 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11745contigM-pyrifera_M_contig11745:1081..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LE76
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.3622043-CDS-M-pyrifera_M_contig11745:1080..13171622815692.3622043-CDS-M-pyrifera_M_contig11745:1080..1317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11745 1081..1317 -
1692277524.3156047-CDS-M-pyrifera_M_contig11745:1080..13171692277524.3156047-CDS-M-pyrifera_M_contig11745:1080..1317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11745 1081..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11745.3607.1prot_M-pyrifera_M_contig11745.3607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11745 1081..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11745.3607.1

>prot_M-pyrifera_M_contig11745.3607.1 ID=prot_M-pyrifera_M_contig11745.3607.1|Name=mRNA_M-pyrifera_M_contig11745.3607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RNYPRSKAQRLVDEAEDSVAGARPALLDLSELGMVRVTSRVYDLDWLEGL
DLSRNRLMRMSPDLAGMDNLVDLDLRHNR
back to top

mRNA from alignment at M-pyrifera_M_contig11745:1081..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11745.3607.1 ID=mRNA_M-pyrifera_M_contig11745.3607.1|Name=mRNA_M-pyrifera_M_contig11745.3607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig11745:1081..1317- (Macrocystis pyrifera P11B4 male)
AGGAACTACCCTCGGTCCAAAGCCCAACGATTGGTCGACGAAGCGGAGGA CAGCGTTGCCGGGGCGCGGCCCGCGCTGTTGGACCTCAGCGAGCTTGGCA TGGTCAGGGTGACGTCAAGGGTGTACGATCTCGACTGGCTGGAAGGTCTA GACCTGTCCCGCAACCGGCTCATGAGGATGTCGCCGGACCTAGCGGGCAT GGACAACCTAGTCGACCTTGATCTGCGGCACAACAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11745:1081..1317-

>mRNA_M-pyrifera_M_contig11745.3607.1 ID=mRNA_M-pyrifera_M_contig11745.3607.1|Name=mRNA_M-pyrifera_M_contig11745.3607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig11745:1081..1317- (Macrocystis pyrifera P11B4 male)
AGGAACTACCCTCGGTCCAAAGCCCAACGATTGGTCGACGAAGCGGAGGA
CAGCGTTGCCGGGGCGCGGCCCGCGCTGTTGGACCTCAGCGAGCTTGGCA
TGGTCAGGGTGACGTCAAGGGTGTACGATCTCGACTGGCTGGAAGGTCTA
GACCTGTCCCGCAACCGGCTCATGAGGATGTCGCCGGACCTAGCGGGCAT
GGACAACCTAGTCGACCTTGATCTGCGGCACAACAGGAGGAACTACCCTC
GGTCCAAAGCCCAACGATTGGTCGACGAAGCGGAGGACAGCGTTGCCGGG
GCGCGGCCCGCGCTGTTGGACCTCAGCGAGCTTGGCATGGTCAGGGTGAC
GTCAAGGGTGTACGATCTCGACTGGCTGGAAGGTCTAGACCTGTCCCGCA
ACCGGCTCATGAGGATGTCGCCGGACCTAGCGGGCATGGACAACCTAGTC
GACCTTGATCTGCGGCACAACAGG
back to top