mRNA_M-pyrifera_M_contig117259.3566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117259.3566.1
Unique NamemRNA_M-pyrifera_M_contig117259.3566.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A0H3YJI8_SCHMD (NPHP4 n=1 Tax=Schmidtea mediterranea TaxID=79327 RepID=A0A0H3YJI8_SCHMD)

HSP 1 Score: 64.7 bits (156), Expect = 2.620e-10
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECW--LVNVQ 231
            ++IGF+NP+  ++ F++ +  P  V +K  +L + +   E I + F P+   CR ++FVFINDE+ KNEE +  LVN Q
Sbjct: 1384 KRIGFQNPYPYQKRFYLSTDRPDLVLLKDTILTIEANQVENIGMIFVPIFQRCRQKIFVFINDEDGKNEETFALLVNYQ 1462          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: UPI0009E4A033 (nephrocystin-4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4A033)

HSP 1 Score: 63.2 bits (152), Expect = 9.140e-10
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNVQCT 237
            +++ F NP+ +++TFH+  + P  +  K  ++EV    +  I L F P   P + ++F+FIND E+KNEE + +N   T
Sbjct: 1539 KRVSFANPYPTKKTFHLKCNRPDLLQFKENIIEVGPGESHSIGLRFTPQQFPGKAEIFIFINDSEDKNEETFSINAVYT 1617          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A1V9YT98_9STRA (Nephrocystin-4-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT98_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.240e-10
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNV 228
            +KI + NPW+  R+F + SS P  +  +   L++       +RL FA    PC  QV++FIND +E+NEEC L ++
Sbjct: 3403 KKISYCNPWEDNRSFMLRSSDPAVMKPREPRLQLRGNGDGFLRLAFARHSVPCTKQVYLFINDHQEQNEECLLFHL 3478          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: UPI0010A0A65A (nephrocystin-4 n=2 Tax=Murinae TaxID=39107 RepID=UPI0010A0A65A)

HSP 1 Score: 61.2 bits (147), Expect = 4.350e-9
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNV 228
            ++I + NP+ S RT+ + S  P  +H K    +VA   T  I L F P  SP + ++ ++IND+E+KNEE + V V
Sbjct: 1353 KRITYTNPYPSRRTYRLHSDRPDLLHFKEDSFQVAGGETYTIGLRFVPSGSPGQEEILIYINDQEDKNEETFCVKV 1428          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A8K0AJX8_ANDGO (Conserved uncharacterized mitochondrial protein n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AJX8_ANDGO)

HSP 1 Score: 60.8 bits (146), Expect = 5.940e-9
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNVQ 231
            +K+ ++NP+ S RTF++ SS     +++   ++VA+R  E I + F         +V+VF+NDE+++NEEC  V V+
Sbjct: 1347 KKVAYKNPYPSARTFNLFSSDESVCYMREVSMQVAAREKEYIHMVFPYGTETTPKEVYVFVNDEQDRNEECLHVKVR 1423          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.150e-8
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNVQ 231
            ++I + NPW   R F + SS    +  +   LE A+  T  IRLW     +    +VF+F+NDE ++NEEC L+ ++
Sbjct:  130 KRIAYANPWSQARAFRLRSSDETVMAPRHGGLEAAAGGTGFIRLWLHAPDAAGSAEVFLFVNDENDQNEECLLIRMR 206          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A0B7BX89_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BX89_9EUPU)

HSP 1 Score: 55.8 bits (133), Expect = 1.410e-8
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    4 KIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLV 222
            +I + NP+   + FH++      +  K ++LE+ S S+  I L F P+  P   ++ VFINDEE+KNEE + +
Sbjct:    1 RITYTNPYPVAKRFHLMCDRNDLLQFKESILEIDSGSSHPIGLRFMPVMQPGAAEIMVFINDEEDKNEETFRI 73          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A2T7PTM2_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PTM2_POMCA)

HSP 1 Score: 59.3 bits (142), Expect = 2.070e-8
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNVQ 231
            ++I + NP+   +TF +L+  P  +  K  LLE+   + + I L FAP+  P   ++ VFINDEE+KNEE + +  +
Sbjct: 1309 KRITYTNPYPLRKTFKILTDRPDLLQFKENLLELEGGAAQPIGLRFAPVTHPGIAELLVFINDEEDKNEETFRITAE 1385          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: UPI002015542D (LOW QUALITY PROTEIN: nephrocystin-4-like n=2 Tax=Alosa TaxID=34772 RepID=UPI002015542D)

HSP 1 Score: 58.5 bits (140), Expect = 3.870e-8
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPSPCRMQVFVFINDEEEKNEECWLVNV 228
            +KI F NP+ + RTFH+LS     +  K    +V    T  I L FAP  SP + ++ +++N++EE NEE + V V
Sbjct: 1335 KKITFTNPYPNTRTFHLLSDRTDLLQFKEDTFQVDGGQTYSIGLRFAPSQSPGQEEILIYVNNQEELNEETFCVKV 1410          
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Match: A0A0M0JYG0_9EUKA (Nephronophthisis 4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JYG0_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 5.250e-8
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1
Query:    1 QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLPS----PCRMQVFVFINDEEEKNEECWLVNVQ 231
            +K+   NP+  + TFH  +  PH +      L + S+  + I L F+PLPS        +V VF+N+EE+KNEEC  + ++
Sbjct:  983 KKVALSNPYAYDATFHFSTDKPHLLAFSAPSLSIPSQEAKYIGLHFSPLPSGGVSDGHTRVLVFVNNEEDKNEECMEITLK 1063          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117259.3566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H3YJI8_SCHMD2.620e-1039.24NPHP4 n=1 Tax=Schmidtea mediterranea TaxID=79327 R... [more]
UPI0009E4A0339.140e-1034.18nephrocystin-4-like n=1 Tax=Orbicella faveolata Ta... [more]
A0A1V9YT98_9STRA9.240e-1038.16Nephrocystin-4-like protein n=1 Tax=Achlya hypogyn... [more]
UPI0010A0A65A4.350e-938.16nephrocystin-4 n=2 Tax=Murinae TaxID=39107 RepID=U... [more]
A0A8K0AJX8_ANDGO5.940e-935.06Conserved uncharacterized mitochondrial protein n=... [more]
A0A836CDE8_9STRA1.150e-835.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0B7BX89_9EUPU1.410e-835.62Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A2T7PTM2_POMCA2.070e-836.36Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
UPI002015542D3.870e-838.16LOW QUALITY PROTEIN: nephrocystin-4-like n=2 Tax=A... [more]
A0A0M0JYG0_9EUKA5.250e-834.57Nephronophthisis 4 n=1 Tax=Chrysochromulina tobini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117259contigM-pyrifera_M_contig117259:46..288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog112098.XP_008613235.1
KEGG koko:K02183,ko:K13974,ko:K16478
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05146,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05146,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0032@1,KOG0032@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.8566418-CDS-M-pyrifera_M_contig117259:45..2881622815689.8566418-CDS-M-pyrifera_M_contig117259:45..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117259 46..288 -
1692277523.323195-CDS-M-pyrifera_M_contig117259:45..2881692277523.323195-CDS-M-pyrifera_M_contig117259:45..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117259 46..288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117259.3566.1prot_M-pyrifera_M_contig117259.3566.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117259 46..288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117259.3566.1

>prot_M-pyrifera_M_contig117259.3566.1 ID=prot_M-pyrifera_M_contig117259.3566.1|Name=mRNA_M-pyrifera_M_contig117259.3566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
QKIGFRNPWDSERTFHVLSSAPHAVHVKTALLEVASRSTELIRLWFAPLP
SPCRMQVFVFINDEEEKNEECWLVNVQCTF*
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mRNA from alignment at M-pyrifera_M_contig117259:46..288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117259.3566.1 ID=mRNA_M-pyrifera_M_contig117259.3566.1|Name=mRNA_M-pyrifera_M_contig117259.3566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig117259:46..288- (Macrocystis pyrifera P11B4 male)
CAGAAAATCGGTTTCCGCAACCCATGGGACTCGGAGCGCACGTTCCACGT GCTGTCGTCTGCGCCGCACGCAGTGCACGTGAAGACGGCGCTGCTGGAGG TGGCATCCCGGAGCACGGAGCTGATCCGGCTGTGGTTCGCGCCGCTGCCC AGCCCGTGTCGGATGCAGGTGTTCGTGTTCATCAACGACGAGGAGGAGAA GAACGAGGAGTGCTGGCTGGTGAACGTTCAGTGCACGTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117259:46..288-

>mRNA_M-pyrifera_M_contig117259.3566.1 ID=mRNA_M-pyrifera_M_contig117259.3566.1|Name=mRNA_M-pyrifera_M_contig117259.3566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig117259:46..288- (Macrocystis pyrifera P11B4 male)
CAGAAAATCGGTTTCCGCAACCCATGGGACTCGGAGCGCACGTTCCACGT
GCTGTCGTCTGCGCCGCACGCAGTGCACGTGAAGACGGCGCTGCTGGAGG
TGGCATCCCGGAGCACGGAGCTGATCCGGCTGTGGTTCGCGCCGCTGCCC
AGCCCGTGTCGGATGCAGGTGTTCGTGTTCATCAACGACGAGGAGGAGAA
GAACGAGGAGTGCTGGCTGGTGAACGTTCAGTGCACGTTTTGACAGAAAA
TCGGTTTCCGCAACCCATGGGACTCGGAGCGCACGTTCCACGTGCTGTCG
TCTGCGCCGCACGCAGTGCACGTGAAGACGGCGCTGCTGGAGGTGGCATC
CCGGAGCACGGAGCTGATCCGGCTGTGGTTCGCGCCGCTGCCCAGCCCGT
GTCGGATGCAGGTGTTCGTGTTCATCAACGACGAGGAGGAGAAGAACGAG
GAGTGCTGGCTGGTGAACGTTCAGTGCACGTTTTGA
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