mRNA_M-pyrifera_M_contig1170.3515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1170.3515.1
Unique NamemRNA_M-pyrifera_M_contig1170.3515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1170.3515.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 5.200e-59
Identity = 108/154 (70.13%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:   34 DGNNMPHLAIPPPFKNPNRKDVSTNWVKRWNRDKKKEMWTNGATGEASEGDPTSSSAERSSTASV-SANSTLVPGTAQYNRRRNALASRGIYEWEAALNTSAGKVYYVNNVNLGTAPAMPTCMDRLGDMTSLVTLKLSQNKLRSLPSRCDTSSI 492
            DGNNMPHLA+PP  K  N KD   +WVKRWNRDKK+EMW N  TGE S+ DPTSSS  RSS AS  S NSTL  GT  YNRRRN LA+RGIYEWEAALN S GKVYY+NNVN     AMP CM+RLGDMT LV+LKLSQNKLRSLPSR D + +
Sbjct:  308 DGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSRLDVNCL 461
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BLAST of mRNA_M-pyrifera_M_contig1170.3515.1 vs. uniprot
Match: A0A8J2WY50_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY50_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-6
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:  244 LVPGTAQYNRRRNALASRGIYEWEAALNTSAGKVYYVNNVNLGTAPAMPTCMDRLGDMTSLVTLKLSQNKLRSLP 468
            L+  T  YN R+  +AS G+ EW    + + G + Y + VN      MP+ +DRLG + SL+ L+   N+LR LP
Sbjct:  623 LITSTVSYNHRKMLIASFGVDEWTVDWSDADGAMVYESAVNSERTIEMPSSLDRLGQLRSLIDLRCDNNQLRDLP 697
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1170.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE74_ECTSI5.200e-5970.13Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A8J2WY50_9STRA1.220e-637.33Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1170contigM-pyrifera_M_contig1170:24061..28326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue3.1e-52
Seed eggNOG ortholog2880.D8LE74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1170.3515.1prot_M-pyrifera_M_contig1170.3515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1170 24061..28326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.0595057-CDS-M-pyrifera_M_contig1170:24060..242041622815687.0595057-CDS-M-pyrifera_M_contig1170:24060..24204Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 24061..24204 +
1692277521.883143-CDS-M-pyrifera_M_contig1170:24060..242041692277521.883143-CDS-M-pyrifera_M_contig1170:24060..24204Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 24061..24204 +
1622815687.07556-CDS-M-pyrifera_M_contig1170:25467..256211622815687.07556-CDS-M-pyrifera_M_contig1170:25467..25621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 25468..25621 +
1692277521.899735-CDS-M-pyrifera_M_contig1170:25467..256211692277521.899735-CDS-M-pyrifera_M_contig1170:25467..25621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 25468..25621 +
1622815687.0869052-CDS-M-pyrifera_M_contig1170:26246..263231622815687.0869052-CDS-M-pyrifera_M_contig1170:26246..26323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 26247..26323 +
1692277521.918346-CDS-M-pyrifera_M_contig1170:26246..263231692277521.918346-CDS-M-pyrifera_M_contig1170:26246..26323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 26247..26323 +
1622815687.0988216-CDS-M-pyrifera_M_contig1170:28200..283261622815687.0988216-CDS-M-pyrifera_M_contig1170:28200..28326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 28201..28326 +
1692277521.9361484-CDS-M-pyrifera_M_contig1170:28200..283261692277521.9361484-CDS-M-pyrifera_M_contig1170:28200..28326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1170 28201..28326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1170.3515.1

>prot_M-pyrifera_M_contig1170.3515.1 ID=prot_M-pyrifera_M_contig1170.3515.1|Name=mRNA_M-pyrifera_M_contig1170.3515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
GLLTSLKHLKLDGNNMPHLAIPPPFKNPNRKDVSTNWVKRWNRDKKKEMW
TNGATGEASEGDPTSSSAERSSTASVSANSTLVPGTAQYNRRRNALASRG
IYEWEAALNTSAGKVYYVNNVNLGTAPAMPTCMDRLGDMTSLVTLKLSQN
KLRSLPSRCDTSSINI*
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mRNA from alignment at M-pyrifera_M_contig1170:24061..28326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1170.3515.1 ID=mRNA_M-pyrifera_M_contig1170.3515.1|Name=mRNA_M-pyrifera_M_contig1170.3515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4266bp|location=Sequence derived from alignment at M-pyrifera_M_contig1170:24061..28326+ (Macrocystis pyrifera P11B4 male)
GGCCTGCTTACGTCGCTGAAGCACCTGAAGCTGGACGGCAACAATATGCC
TCACCTGGCCATCCCTCCTCCTTTCAAGAATCCGAACAGAAAGGATGTAT
CGACGAATTGGGTCAAGCGCTGGAACAGGGACAAGAAGAAGGAGGTGCTA
TGTATTTATATACTTATATTTCCTGTGAATTTCTTCCGTGTCTAGCTATA
CGCACACGAGACCTCTTGCTTCTTCTCCTTTTCACGAGATCCTTTGATTT
AAACGTCACTTTGTGTGCGCAGAAGGAATGTTTCGGAGCGGTAAGGAAGG
AAAGGGTCGTGGGGGTATCGAGTCATGCGTCAGTAAAAAAAGTTCGTGAC
CTACGGTATTATATCTGTATGTGGATGATCGCTCAAACAGAGGAGATTCA
GTGCACAGAGTCAGAACGTTGGGGGGGGGGAGGGGACAGTTGTTTTTCTA
TTTTGTGACAATGCTTGTCGTAGACTTGTGTTGGTTCCTATTACGAGGGA
ATATAGTAAATAGGACCTACGGTACACACAAGAAACCTATACACTTCTCT
ATTTTTACTAACAATATTTGGTCTTATTAACTACGGTCCCCCGCAACAGA
AACAACAGCATTTACGTATAGGATGGGGCTGATTCGGTTACTTTGAGGCA
GCGAAGAGCGCAGGAGAACGTCTAGAACGCCATGATGCATGCTATATGTA
CCTACGGAACACGGAGATGCCCTACGGAACACGGAGATGCCCTACATAGT
CCTTTTCATGCTCTCCTGCTCTCCTTCTACCCTGTTCCCCCCCCCACCCC
CTCCCCACCCCTGACCGAATTTGGCCACCCGCCCCCCCCCTTCACCTCTT
TTGCCTCCCCACCCCCACCCCGCTTGCATTCGAGGTAGCACGTTTTTGGG
CAAAGGTATTTACGACTGACCGGGTGTCTTAACCCGATATTGTTGGAATA
CCATCTGTGTTGTACTTATACTATTCGGGGAGTATACCAGTCACGGGGGA
ACATACAGTACCGCACAGTAGTAATCAGGACCAAATATTCTTGGTAAGAA
CACTGGAACATGTACAGTAGTAGGTTTTGTGTATATTGATGGGTCCTGAT
CGCTGTTGTTAACATCACGGAGGACCGTAGCAAATGGGACCAAATTTTGC
TGGTAAAAATAGGTAAGTACATGGGTTTTTGGGTGTACTGCAGGTCCTGC
TTACTCTAGGTCCTCCCTAGTACTGTGGGTGACGGGATTGGTCATAGGGA
TGCTCTTTTACATTTCTTCAAAAATTCACTCTCGTATCTACTACAATCGA
ATAGTGGATGTTAACCGGTCGATCAAAGCCATCGACTATATACATACATG
TGTATATATGTATATATATTGGTGTCATCCAACCATCCTGCCCTTCCTCT
CCGAAAGATGTGGACCAACGGAGCCACCGGGGAGGCGAGCGAGGGGGACC
CCACCTCTTCGTCGGCGGAACGCAGTTCCACCGCGTCAGTGTCCGCTAAT
TCCACGCTCGTCCCGGGAACGGCCCAGTACAACCGAAGAAGGAACGCGCT
AGCGTCGAGAGGTGGGTGGGCTGACTTGATGTTCTTCCGGGGAAACACAC
AACCCGTCGCATCTCCGTAGAGTTCATGCAGTTACAACTAGTCGACCTTG
ACGCAAGTGTATGACCATAAAGTGTTGCTATATATATACATGATGAGTGA
TGGGCGTGTTGAAGAAGCAGCAGGCGTGGGCCTACCCGGCGCGGCGCTGG
GTGCTTGGCTAAAGAGCAAAGCGGTGTATAATATAATACCTGGTAGCAAT
CGAACCTATACTACAGTAGAAGCAGAAGTGTATATGTGGGAGTTGGGATT
ATACTTGGCTGAACGTCTTGGTGCTGCTGCAGCGGTATTAGCGTACGTTC
GGTTCAAGTCGGAATGGAGCATGTTCGCTACGTTATCGGGGGGGAAAAAA
TAATAATATTGTCCTGGTGCTTTATCACAGTTGTTTTTGTTTGGAAATCG
GTGGCTTATATGGTTGGTGCAGTCACTCCATGGCGTGTGAATTTTTTGGG
AGGTTGTCTTTGTTTTTCGAGCCGCTTGATAGGTATTGCCGAGTCCGGTA
ATGTATCGAGGTTTTTTGTAGTCGAAGACGGGACGTCTTCATGAAACCGC
CTCGGTTCCCGCTGATTTCGTGCGTTTTGTGTCCAGGAATTTACGAATGG
GAAGCGGCGTTGAACACCAGCGCCGGGAAGGTGTACTACGTGAACAACGT
CAACCTCGGCACGGTGAAAATGATACACAGATCAATCTACTTGTAGATCC
TCTGACCTGCCATTGTAAACTGTTGCGCAGGAACTGTGTACGTATTTCCA
TGTGAACAACGCCGACCCCAGCACGACGAGAACGACACACAGATCACGAT
AAACTACGACACAACATATCATGCAGATCGCGATATACCATAAACTACAA
CAACAGATCATGCAGATCATCTACCCTACCTACCGTCATGAGCTGTTTGT
GCAGGATAGGCGCAGCACAGATCGAACACAGGACGTACCTGGTGTGCGCT
ATCAAGACACCATGCAGATGATACGGCTCATTCCCGGCGACGTGGGCTAG
ATTGTGAATACCAAGATCGAGAATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCCATTTATCTATCTATCTATCTACCTATACCTGCCC
TGGATGGTCATCTACCAGATCACGAAGCGGAGATCGATTATTCTGTCTGG
GTCCGAGCTGCGGAATGATATAACTTCCCACTTGGACATCTCAGGTAGCA
ACGGAAGACAGCAGGCGCAAAGTAACCCGTTTGGATATTATGAAAGAAGC
ATATCTGAAGCCGCCGATATGTAAAATCAGTACAGTACGGTATACGGTAT
ACCTTGATATTCCACGGGTGACAAGATAACACTCGTCGAGATCTCTTCAA
AGCCGCCACCAGTTTCGTCGTGCGTGGCACTAGGGGGATGTGAAGATGAG
TACCACTTGGTCTTCATGTTAACGTCTTAGTAGTCCTTACTTTTCCGCCC
AGAATGGCATACGGCACTACTGTAGACTGCAGGAAATACGCCACTATTAC
GGGGGACCATAGCAAATAGGACCAAATATTGTTAGAAAAAATAGGGAAAT
ATATAGGTTTTAGAGTGTACCATAGGTCCTATATACTATGGTCCCCCGTA
ATAGATCCCTACACGACATTCGGTATCGCAAGAAAGTTCAGGGTAATCGA
TCCAGATACGTGTGCATATGTTGATGGTGCCAGCGGCCAAGAAGAGATAT
TTCCTTAAATCGTCTCACCAAACCAGCCAACTAGCTACGTACGCTATCGT
AGCTACGTCCGTTTTACTTGGCAGCTGAGCGCATCTAATCCAGGGGGTGG
TTGATTGACAGAGAGCAAAACCGCGCTTTACTTAATGTACGACCATCGGA
CATTTATCGTGGCTTGTCTCAACCATGCCACTCTGCTCCAAAATATAGTA
ACCGTTTTTTAGTATGATGCTAGTATCAAACGAGTATCATGTTCCCGACC
AGAGTGTTACGCGTATACCTGGTATTCATGAAGAAAAGTAAAAAACAAAA
ATGAAGCTGTGAGATCGGAAAATAACTAATAACTCATCTTTAGTGTGATA
CTACCTTAGTGATTATTCGATCGCGCATTCTACGGAGTGCGCAGGTTTCC
AAAGCTATCAACAAATTAGTAAAGGTTTGAAAGCAACGAATTCGATACCT
ACCAAGTGTATGTACGACTTATCGAAAATGAAACACCAGGTACATATCTA
CCCACACCGTCGCAACCACCGTACGCACCGTAACCGGGGAGCGGGCGAGG
TTTTTTCGACACAAGACGTGTGCGTACGAGTATGTAGCTGGTCATTTCTT
AGAAGCAACACAAACAAACAACCAACTTGGACAACGTTTACAACAACAAA
CACTACTGTTGAGCGAGAAGTTGTCAACAGGATGTGTCCCTACCAAAAGG
ACATCTGCTTCACCGCACGCACTCGGTACACAGCCGACGCAAGTACGTGC
TTCCCATCAATCGCCGGATTGCCAAACGCCTCTGAGTTTTGGAACTCCTC
GGTACGGTACGCCATTTCTCTTGTTGGTTCCCCCAAGCAGGCTCCGGCGA
TGCCCACATGCATGGACCGCCTGGGAGACATGACGAGCCTCGTGACGCTG
AAACTCAGCCAGAACAAGCTCCGATCTCTACCGAGCAGGTGCGACACTAG
TTCAATAAATATATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1170:24061..28326+

>mRNA_M-pyrifera_M_contig1170.3515.1 ID=mRNA_M-pyrifera_M_contig1170.3515.1|Name=mRNA_M-pyrifera_M_contig1170.3515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig1170:24061..28326+ (Macrocystis pyrifera P11B4 male)
GGCCTGCTTACGTCGCTGAAGCACCTGAAGCTGGACGGCAACAATATGCC
TCACCTGGCCATCCCTCCTCCTTTCAAGAATCCGAACAGAAAGGATGTAT
CGACGAATTGGGTCAAGCGCTGGAACAGGGACAAGAAGAAGGAGGGCCTG
CTTACGTCGCTGAAGCACCTGAAGCTGGACGGCAACAATATGCCTCACCT
GGCCATCCCTCCTCCTTTCAAGAATCCGAACAGAAAGGATGTATCGACGA
ATTGGGTCAAGCGCTGGAACAGGGACAAGAAGAAGGAGATGTGGACCAAC
GGAGCCACCGGGGAGGCGAGCGAGGGGGACCCCACCTCTTCGTCGGCGGA
ACGCAGTTCCACCGCGTCAGTGTCCGCTAATTCCACGCTCGTCCCGGGAA
CGGCCCAGTACAACCGAAGAAGGAACGCGCTAGCGTCGAGAGATGTGGAC
CAACGGAGCCACCGGGGAGGCGAGCGAGGGGGACCCCACCTCTTCGTCGG
CGGAACGCAGTTCCACCGCGTCAGTGTCCGCTAATTCCACGCTCGTCCCG
GGAACGGCCCAGTACAACCGAAGAAGGAACGCGCTAGCGTCGAGAGGAAT
TTACGAATGGGAAGCGGCGTTGAACACCAGCGCCGGGAAGGTGTACTACG
TGAACAACGTCAACCTCGGCACGGAATTTACGAATGGGAAGCGGCGTTGA
ACACCAGCGCCGGGAAGGTGTACTACGTGAACAACGTCAACCTCGGCACG
GCTCCGGCGATGCCCACATGCATGGACCGCCTGGGAGACATGACGAGCCT
CGTGACGCTGAAACTCAGCCAGAACAAGCTCCGATCTCTACCGAGCAGGT
GCGACACTAGTTCAATAAATATATGAGCTCCGGCGATGCCCACATGCATG
GACCGCCTGGGAGACATGACGAGCCTCGTGACGCTGAAACTCAGCCAGAA
CAAGCTCCGATCTCTACCGAGCAGGTGCGACACTAGTTCAATAAATATAT
GA
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