mRNA_M-pyrifera_M_contig116155.3349.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116155.3349.1
Unique NamemRNA_M-pyrifera_M_contig116155.3349.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: D8LBZ8_ECTSI (Protochlorophyllide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.640e-32
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P +AYKDSKVCNVLMMREM+KR++  GM+VSALFPGCIAESPLFREKRGWFR  FP+FQK+VT+Q VS E  E GR
Sbjct:  262 PTKAYKDSKVCNVLMMREMNKRYSSGGMVVSALFPGCIAESPLFREKRGWFRAGFPVFQKFVTRQLVSVE--EAGR 335          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A7S0M6J6_9CRYP (Protochlorophyllide reductase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6J6_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 2.060e-28
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   13 NPLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            +P +AYKDSK CNVL M+EM +RF   G+  SA+FPGC+AESPLFR+KR WFR +FPLFQKY+TKQFV   V E GR
Sbjct:  253 DPTKAYKDSKACNVLTMKEMHRRFASKGVTFSAIFPGCVAESPLFRDKRDWFRFIFPLFQKYITKQFVP--VSEAGR 327          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A6T8NUL2_HEMAN (Protochlorophyllide reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NUL2_HEMAN)

HSP 1 Score: 114 bits (284), Expect = 1.050e-27
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPN-GMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P ++YK+SKVCN ++MREM+KR+  + G+ V+A+FPGCIAESPLFR+KRGWFR LFPLFQKYVTKQFV  E +E GR
Sbjct:  266 PTKSYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRGWFRWLFPLFQKYVTKQFV--EEKEAGR 340          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A7S0Z1U2_9CRYP (Protochlorophyllide reductase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1U2_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 3.790e-27
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPN-GMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P +AYK+SKVCN ++MREM+KR+  + G+ V+A+FPGCIAESPLFR+KR WFR LFPLFQKYVTKQFV  E +E GR
Sbjct:  275 PTKAYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRDWFRWLFPLFQKYVTKQFV--EEKEAGR 349          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: S0F3U3_CHOCR (Protochlorophyllide reductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3U3_CHOCR)

HSP 1 Score: 110 bits (275), Expect = 3.860e-27
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P +AYKDSKVCN+L M EM++R+  +G+  SA+FPGCIA+S LFREKRGWFR LFPLFQ+Y+TKQ V  E  E GR
Sbjct:  246 PTKAYKDSKVCNILTMTEMNRRYGTDGVTFSAVFPGCIAQSELFREKRGWFRALFPLFQRYITKQLVPVE--EAGR 319          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A1X6NIP3_PORUM (Protochlorophyllide reductase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIP3_PORUM)

HSP 1 Score: 108 bits (270), Expect = 8.230e-27
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P +AYKDSKVCNVL M  + +R   +G+IVSA++PGCIA+S LFR+KRGWFR  FPLFQKYVTKQ+VS E  E GR
Sbjct:  187 PTKAYKDSKVCNVLTMTALHERAAKDGVIVSAVYPGCIADSELFRQKRGWFRWFFPLFQKYVTKQYVSEE--EAGR 260          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A2V3J6B4_9FLOR (Protochlorophyllide reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B4_9FLOR)

HSP 1 Score: 107 bits (267), Expect = 5.140e-26
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEVREGGR 243
            P +AYKDSKVCN+L M+EM +R   +G+  +A+FPGCIA+S LFREKRGWFR  FPLFQKYVT+Q V  E  E GR
Sbjct:  240 PTKAYKDSKVCNILTMKEMHRRHASSGVAFTAIFPGCIAQSELFREKRGWFRWFFPLFQKYVTRQMVPVE--EAGR 313          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: L1JNU2_GUITC (Protochlorophyllide reductase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNU2_GUITC)

HSP 1 Score: 108 bits (271), Expect = 6.760e-26
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPN-GMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTEV 228
            P +AYKDSKVCN ++MREM+KR+  + G+IV+A+FPGCIAESPLFR+KR WFR LFP FQK +TKQFV  EV
Sbjct:  269 PTKAYKDSKVCNAIVMREMNKRYGKSRGLIVNAMFPGCIAESPLFRQKRAWFRWLFPKFQKAITKQFVPEEV 340          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A7S1TKW4_9RHOD (Protochlorophyllide reductase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKW4_9RHOD)

HSP 1 Score: 107 bits (267), Expect = 8.690e-26
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTE 225
            P +AYKDSKVCN + M++M  R++P G++VSALFPGC+A S LFREKRGWF + FP FQK +TKQ+V+T+
Sbjct:  258 PTKAYKDSKVCNAITMKQMSDRYSPRGVVVSALFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVTTQ 327          
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Match: A0A5J4YUK9_PORPP (Protochlorophyllide reductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUK9_PORPP)

HSP 1 Score: 105 bits (263), Expect = 3.150e-25
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   16 PLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFREKRGWFRTLFPLFQKYVTKQFVSTE 225
            P +AYKDSKVCN + M++M  R+ P G++VSA+FPGC+A S LFREKRGWF + FP FQK +TKQ+VS E
Sbjct:  255 PTKAYKDSKVCNAITMKQMSDRYGPRGVVVSAMFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVSVE 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116155.3349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ8_ECTSI2.640e-3276.32Protochlorophyllide reductase n=2 Tax=Ectocarpus T... [more]
A0A7S0M6J6_9CRYP2.060e-2866.23Protochlorophyllide reductase (Fragment) n=1 Tax=C... [more]
A0A6T8NUL2_HEMAN1.050e-2768.83Protochlorophyllide reductase n=1 Tax=Hemiselmis a... [more]
A0A7S0Z1U2_9CRYP3.790e-2768.83Protochlorophyllide reductase n=1 Tax=Hemiselmis t... [more]
S0F3U3_CHOCR3.860e-2765.79Protochlorophyllide reductase n=1 Tax=Chondrus cri... [more]
A0A1X6NIP3_PORUM8.230e-2767.11Protochlorophyllide reductase n=1 Tax=Porphyra umb... [more]
A0A2V3J6B4_9FLOR5.140e-2664.47Protochlorophyllide reductase n=1 Tax=Gracilariops... [more]
L1JNU2_GUITC6.760e-2669.44Protochlorophyllide reductase n=1 Tax=Guillardia t... [more]
A0A7S1TKW4_9RHOD8.690e-2662.86Protochlorophyllide reductase n=1 Tax=Erythrolobus... [more]
A0A5J4YUK9_PORPP3.150e-2562.86Protochlorophyllide reductase n=1 Tax=Porphyridium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116155contigM-pyrifera_M_contig116155:225..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D8LBZ8
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.3.1.33
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.2872849-CDS-M-pyrifera_M_contig116155:224..4671622815678.2872849-CDS-M-pyrifera_M_contig116155:224..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116155 225..467 -
1692277517.829482-CDS-M-pyrifera_M_contig116155:224..4671692277517.829482-CDS-M-pyrifera_M_contig116155:224..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116155 225..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116155.3349.1prot_M-pyrifera_M_contig116155.3349.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116155 225..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116155.3349.1

>prot_M-pyrifera_M_contig116155.3349.1 ID=prot_M-pyrifera_M_contig116155.3349.1|Name=mRNA_M-pyrifera_M_contig116155.3349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MDDRNPLQAYKDSKVCNVLMMREMDKRFTPNGMIVSALFPGCIAESPLFR
EKRGWFRTLFPLFQKYVTKQFVSTEVREGGR
back to top

mRNA from alignment at M-pyrifera_M_contig116155:225..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116155.3349.1 ID=mRNA_M-pyrifera_M_contig116155.3349.1|Name=mRNA_M-pyrifera_M_contig116155.3349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig116155:225..467- (Macrocystis pyrifera P11B4 male)
ATGGACGATCGAAACCCTTTGCAGGCCTACAAGGACTCTAAGGTATGCAA CGTGCTGATGATGAGGGAGATGGACAAGCGTTTCACGCCCAACGGGATGA TCGTGAGTGCGCTCTTCCCCGGCTGTATCGCGGAGTCGCCGCTTTTCAGG GAGAAGCGCGGATGGTTCCGGACTCTGTTCCCGCTGTTCCAGAAGTACGT CACCAAGCAGTTCGTCTCCACCGAGGTGAGGGAGGGAGGGAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116155:225..467-

>mRNA_M-pyrifera_M_contig116155.3349.1 ID=mRNA_M-pyrifera_M_contig116155.3349.1|Name=mRNA_M-pyrifera_M_contig116155.3349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig116155:225..467- (Macrocystis pyrifera P11B4 male)
ATGGACGATCGAAACCCTTTGCAGGCCTACAAGGACTCTAAGGTATGCAA
CGTGCTGATGATGAGGGAGATGGACAAGCGTTTCACGCCCAACGGGATGA
TCGTGAGTGCGCTCTTCCCCGGCTGTATCGCGGAGTCGCCGCTTTTCAGG
GAGAAGCGCGGATGGTTCCGGACTCTGTTCCCGCTGTTCCAGAAGTACGT
CACCAAGCAGTTCGTCTCCACCGAGGTGAGGGAGGGAGGGAGGATGGACG
ATCGAAACCCTTTGCAGGCCTACAAGGACTCTAAGGTATGCAACGTGCTG
ATGATGAGGGAGATGGACAAGCGTTTCACGCCCAACGGGATGATCGTGAG
TGCGCTCTTCCCCGGCTGTATCGCGGAGTCGCCGCTTTTCAGGGAGAAGC
GCGGATGGTTCCGGACTCTGTTCCCGCTGTTCCAGAAGTACGTCACCAAG
CAGTTCGTCTCCACCGAGGTGAGGGAGGGAGGGAGG
back to top