mRNA_M-pyrifera_M_contig115837.3286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115837.3286.1
Unique NamemRNA_M-pyrifera_M_contig115837.3286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S4MML6_9EUKA (Glucan 1,4-alpha-glucosidase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MML6_9EUKA)

HSP 1 Score: 157 bits (396), Expect = 1.180e-44
Identity = 73/126 (57.94%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRN 378
            GDTYAGGNPW+LT+ SLAQLFYRGA   +    +P  E++ HW+ IF +V    H+   +   +PL+FA  V +AGDAV+ R+ YH +  GFH  EQ+D+NTGAE SATDLTWSYATILKAMW+RN
Sbjct:  185 GDTYAGGNPWVLTSASLAQLFYRGATGFVGQNEVPAEESLAHWQQIFLRVIHEHHSIRKMKKYTPLQFARLVTSAGDAVLDRIRYHTQSSGFHQPEQLDKNTGAEASATDLTWSYATILKAMWHRN 310          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A0L0D8W1_THETB (Glucan 1,4-alpha-glucosidase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8W1_THETB)

HSP 1 Score: 129 bits (325), Expect = 8.490e-33
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRNYFTTA 393
            GDTYAGGNPWILTT +LAQL YR A+  +  G+LP  + + H+  +F +      + ESL  +S   FA+ +A+AGD V+ R+ YHV   GFHLSEQ+DR+TG E SATDLTWSYA +LKA+  R+ F  A
Sbjct:  383 GDTYAGGNPWILTTAALAQLHYRAASEVVNVGKLPH-DALPHYAEMFGE------SAESLGKLSVANFALRLASAGDGVLERIRYHVAGAGFHLSEQLDRDTGFEMSATDLTWSYANVLKAVAARDAFVVA 506          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S0LQZ5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQZ5_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 3.900e-29
Identity = 65/132 (49.24%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRNYFTTAA 396
            GD YAGGNPWILTTN+LAQL+YRGA  +L  G  P  E    WR       R +   +   A S   F+  +AT GD V+ RV YH+    +H+ EQ+D+NTG E SA+DLTWSYAT+LKAM  R+ +   A
Sbjct:   71 GDHYAGGNPWILTTNALAQLYYRGAKEALEVGP-PSVEDQAKWRTAM----RLEDDADLSTAES---FSAALATTGDGVLTRVRYHILGLDYHMYEQLDKNTGFEISASDLTWSYATLLKAMHARDAYVATA 194          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: F2U8G2_SALR5 (Glucan 1,4-alpha-glucosidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8G2_SALR5)

HSP 1 Score: 114 bits (285), Expect = 5.490e-27
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRNYFTTAA 396
            GD YAGGNPW+LT+  LA++ YR A ++  + R+P  E   H++ I  Q+       E+L   +P   A  +  +GD V+ R+  H      H  EQ+D+NTGAE SATDLTWSYATILKAM  R+  T+AA
Sbjct:  392 GDQYAGGNPWVLTSGCLAEVLYRAANSTAATRRMPTAEATEHFKAIAAQLNPAAVAAENLDMDTPAGLARALVLSGDGVLNRIRAHTINNDLHQPEQLDKNTGAEASATDLTWSYATILKAMAVRDTITSAA 523          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S3LYN3_9STRA (Glucan 1,4-alpha-glucosidase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYN3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.680e-26
Identity = 61/132 (46.21%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRNYFTTAA 396
            GDTYAGGNPW+L+T++LA LFYR AA  L +G +P    M  W++           + S L  +    A   A  GD V+ R+  HV+   FHL EQIDRNTG + SA+DLTWSYA  L AM+YR  +   A
Sbjct:  391 GDTYAGGNPWVLSTSALASLFYRAAAHVLQNG-VPSSAAMSVWKSAI--------NSPSALPTNAAALAQVFAAQGDGVLLRLRRHVQGNDFHLDEQIDRNTGYQISASDLTWSYAETLNAMYYRGLYLNVA 513          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A9UPK3_MONBE (Glucan 1,4-alpha-glucosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UPK3_MONBE)

HSP 1 Score: 106 bits (265), Expect = 2.550e-24
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQ---HTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAM 366
            GD+Y  GNPW+LTT  LA+L YR +A  LT G +   E +  W        R Q    T E L    P      +A +GD V+ R+ YH +  GFH+ EQ+D+NTGA  SA DLTWSYAT+LKAM
Sbjct:  399 GDSYDNGNPWVLTTGCLAELLYRASAQVLTRGAVLAEEAVA-WLGALQSTNRVQLEAQTAEEL--QDPRVLGRALAQSGDGVLLRIRYHTQSIGFHMPEQLDKNTGANLSAYDLTWSYATVLKAM 520          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S2F838_9STRA (Glucan 1,4-alpha-glucosidase n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F838_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.770e-23
Identity = 62/132 (46.97%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAMWYRNYFTTAA 396
            GD+YAGGNPW+LTT +LA LFYRG+   L +G LPD +    W +   +         S  A S L        AGD+VM R+  HV    FHL EQIDRNTG + SA DLTWSYA +L A+  R     AA
Sbjct:  394 GDSYAGGNPWVLTTAALATLFYRGSL-DLAAGNLPDADAQAVWADALGE-----EFPASASAASDL-----FLRAGDSVMIRLRSHVVADDFHLDEQIDRNTGVQMSAKDLTWSYAEVLNAVTARKAVIDAA 514          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S2H1A1_9STRA (Glucan 1,4-alpha-glucosidase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1A1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.720e-22
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAM 366
            GDTYAGGNPW+LTT +LAQ+FYR A  + T G LP       W  +             +   +  E A  +AT+GD+V+ R+  HV   G  L EQIDR++G + SA  LTWSYA +L AM
Sbjct:  400 GDTYAGGNPWVLTTAALAQVFYRAAFQTKTFG-LPSEAAQEQWSKL------------GITTSTSSEMAQALATSGDSVLLRLAKHVNGDGGRLDEQIDRDSGEQASAQSLTWSYAEVLNAM 508          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A0V0QB16_PSEPJ (Glucan 1,4-alpha-glucosidase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QB16_PSEPJ)

HSP 1 Score: 92.8 bits (229), Expect = 2.100e-19
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGR--LPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPY-GFHLSEQIDRNTGAEESATDLTWSYATILK 360
            GD YAGGNPW L + SLA++FY+GA  SL      +P+ E + HWRN+     +          + P   A     AG+AVMYR++ HV+    F L EQID+N G + SA DLTWS+A +L+
Sbjct:  390 GDVYAGGNPWQLLSASLAEVFYKGAEASLAMEHEYVPE-EHLVHWRNLMKLPAK----------VKPTHLAAAQKKAGNAVMYRIWVHVQDTDSFSLYEQIDKNNGQQMSAKDLTWSFANVLR 501          
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Match: A0A7S4LNP1_OXYMA (Glucan 1,4-alpha-glucosidase n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LNP1_OXYMA)

HSP 1 Score: 87.0 bits (214), Expect = 2.220e-17
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQVGRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDRNTGAEESATDLTWSYATILKAM 366
            GD+Y GGNPW+L T +LAQL YR AA + T     D++T        + + ++ ++ ++ L  + L  A+    AGD V+ R+  HVE   FH+ EQ+ R  G++ SA DLTW YA ILKAM
Sbjct:  377 GDSYDGGNPWVLLTATLAQLIYRQAAAATTG--TVDKDT--------YALLQQAYSIDAGLTGAALGKAL--MGAGDGVLMRIRKHVEADDFHMKEQLSRTDGSQTSAKDLTWGYANILKAM 486          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115837.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MML6_9EUKA1.180e-4457.94Glucan 1,4-alpha-glucosidase (Fragment) n=1 Tax=Va... [more]
A0A0L0D8W1_THETB8.490e-3352.67Glucan 1,4-alpha-glucosidase n=1 Tax=Thecamonas tr... [more]
A0A7S0LQZ5_9EUKA3.900e-2949.24Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
F2U8G2_SALR55.490e-2745.45Glucan 1,4-alpha-glucosidase n=1 Tax=Salpingoeca r... [more]
A0A7S3LYN3_9STRA3.680e-2646.21Glucan 1,4-alpha-glucosidase n=1 Tax=Spumella elon... [more]
A9UPK3_MONBE2.550e-2446.40Glucan 1,4-alpha-glucosidase n=1 Tax=Monosiga brev... [more]
A0A7S2F838_9STRA7.770e-2346.97Glucan 1,4-alpha-glucosidase n=2 Tax=Florenciella ... [more]
A0A7S2H1A1_9STRA9.720e-2244.26Glucan 1,4-alpha-glucosidase n=2 Tax=Dictyocha spe... [more]
A0A0V0QB16_PSEPJ2.100e-1943.09Glucan 1,4-alpha-glucosidase n=1 Tax=Pseudocohnile... [more]
A0A7S4LNP1_OXYMA2.220e-1741.80Glucan 1,4-alpha-glucosidase n=1 Tax=Oxyrrhis mari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115837contigM-pyrifera_M_contig115837:57..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score115.5
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog946362.XP_004994493.1
Preferred nameSGA1
KEGG koko:K01178
KEGG ReactionR01790,R01791,R06199
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000272,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004339,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005773,GO:0005783,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009986,GO:0009987,GO:0012505,GO:0015926,GO:0015980,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0042763,GO:0042764,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071704,GO:1901575
EggNOG free text desc.1,4-alpha-D-glucan glucohydrolase
EggNOG OGs2QPM2@2759,38CT8@33154,COG3387@1
EC3.2.1.3
COG Functional cat.G
CAZyGH15
BiGG ReactioniMM904.YIL099W
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.9468834-CDS-M-pyrifera_M_contig115837:56..4521622815674.9468834-CDS-M-pyrifera_M_contig115837:56..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115837 57..452 +
1692277516.196235-CDS-M-pyrifera_M_contig115837:56..4521692277516.196235-CDS-M-pyrifera_M_contig115837:56..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115837 57..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115837.3286.1prot_M-pyrifera_M_contig115837.3286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115837 57..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115837.3286.1

>prot_M-pyrifera_M_contig115837.3286.1 ID=prot_M-pyrifera_M_contig115837.3286.1|Name=mRNA_M-pyrifera_M_contig115837.3286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
GDTYAGGNPWILTTNSLAQLFYRGAATSLTSGRLPDRETMRHWRNIFWQV
GRRQHTTESLLAMSPLEFAMEVATAGDAVMYRVYYHVEPYGFHLSEQIDR
NTGAEESATDLTWSYATILKAMWYRNYFTTAA
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mRNA from alignment at M-pyrifera_M_contig115837:57..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115837.3286.1 ID=mRNA_M-pyrifera_M_contig115837.3286.1|Name=mRNA_M-pyrifera_M_contig115837.3286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig115837:57..452+ (Macrocystis pyrifera P11B4 male)
GGCGACACTTACGCCGGCGGCAACCCTTGGATTCTCACGACCAACTCTCT TGCACAGCTCTTCTACAGGGGTGCGGCGACGTCGCTCACGAGCGGCCGCC TTCCTGACAGGGAGACAATGCGACACTGGAGAAACATCTTCTGGCAGGTG GGCCGCAGGCAGCACACTACAGAGAGTCTCCTGGCGATGAGTCCGCTGGA GTTTGCGATGGAGGTGGCCACTGCAGGAGACGCAGTGATGTATCGCGTCT ACTACCACGTCGAGCCCTATGGCTTCCACCTCTCCGAGCAGATCGACAGG AACACTGGCGCTGAGGAGAGTGCCACTGACCTCACGTGGTCCTACGCCAC AATCCTCAAGGCCATGTGGTACCGCAACTACTTCACCACCGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115837:57..452+

>mRNA_M-pyrifera_M_contig115837.3286.1 ID=mRNA_M-pyrifera_M_contig115837.3286.1|Name=mRNA_M-pyrifera_M_contig115837.3286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig115837:57..452+ (Macrocystis pyrifera P11B4 male)
GGCGACACTTACGCCGGCGGCAACCCTTGGATTCTCACGACCAACTCTCT
TGCACAGCTCTTCTACAGGGGTGCGGCGACGTCGCTCACGAGCGGCCGCC
TTCCTGACAGGGAGACAATGCGACACTGGAGAAACATCTTCTGGCAGGTG
GGCCGCAGGCAGCACACTACAGAGAGTCTCCTGGCGATGAGTCCGCTGGA
GTTTGCGATGGAGGTGGCCACTGCAGGAGACGCAGTGATGTATCGCGTCT
ACTACCACGTCGAGCCCTATGGCTTCCACCTCTCCGAGCAGATCGACAGG
AACACTGGCGCTGAGGAGAGTGCCACTGACCTCACGTGGTCCTACGCCAC
AATCCTCAAGGCCATGTGGTACCGCAACTACTTCACCACCGCCGCCGGCG
ACACTTACGCCGGCGGCAACCCTTGGATTCTCACGACCAACTCTCTTGCA
CAGCTCTTCTACAGGGGTGCGGCGACGTCGCTCACGAGCGGCCGCCTTCC
TGACAGGGAGACAATGCGACACTGGAGAAACATCTTCTGGCAGGTGGGCC
GCAGGCAGCACACTACAGAGAGTCTCCTGGCGATGAGTCCGCTGGAGTTT
GCGATGGAGGTGGCCACTGCAGGAGACGCAGTGATGTATCGCGTCTACTA
CCACGTCGAGCCCTATGGCTTCCACCTCTCCGAGCAGATCGACAGGAACA
CTGGCGCTGAGGAGAGTGCCACTGACCTCACGTGGTCCTACGCCACAATC
CTCAAGGCCATGTGGTACCGCAACTACTTCACCACCGCCGCC
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