mRNA_M-pyrifera_M_contig11558.3227.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11558.3227.1
Unique NamemRNA_M-pyrifera_M_contig11558.3227.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A6H5L6B2_9PHAE (DHQ_synthase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6B2_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.120e-58
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFCDRQ 351
            +TGLGYG+LLHGEAVAIGMHMAADMSCR+GWV++ELVDR+V LM KAGLPVELP GGGMDMDKFL AMAVDKKV+DGELRLILLKG LGGC+MTG +DE AMRATIQDFCDRQ
Sbjct:  332 ETGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDQELVDRSVALMEKAGLPVELPKGGGMDMDKFLTAMAVDKKVADGELRLILLKGDLGGCVMTGEFDEAAMRATIQDFCDRQ 444          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A835Z318_9STRA (3-Dehydroquinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z318_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.230e-40
Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFCDRQ 351
            +TGLGYG LLHGEAVAIG HMAA MS +LGW++  L  R V L+  A LPVELP GGGM   KF  AMA+DKKVS+GELRL+LL+GPLGGC+ TG YD  AMR TI +FC RQ
Sbjct:  264 ETGLGYGALLHGEAVAIGTHMAAVMSAKLGWIDAALAARAVALLRAAALPVELPRGGGMTPAKFEAAMALDKKVSEGELRLVLLRGPLGGCVFTGEYDAAAMRETIAEFCARQ 376          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A446TAZ8_TRITD (DHQ_synthase domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TAZ8_TRITD)

HSP 1 Score: 132 bits (332), Expect = 6.230e-35
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFCD 345
            +TGLGYG  LHGEAVA G  MAADMS RLGW++  +  RT  ++ +A LPV  P G  M ++KF N MAVDKKV+DG LRLILLKGPLGGC+ TG YD  A+  T++ FCD
Sbjct:   16 ETGLGYGEWLHGEAVAAGTVMAADMSYRLGWIDESIKKRTFDILDQAKLPVTPPKG--MTVEKFRNIMAVDKKVADGLLRLILLKGPLGGCVFTGEYDRKALDETLRAFCD 124          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: W7TCV4_9STRA (3-dehydroquinate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCV4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.920e-34
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFC 342
            +TGLGYG+ LHGEAV++GM MA DMS RLGWV+RE+  RTV L+ +AGLPV LP   GMD++KF   M++DKKVSDG LRLILLKG LG C+ T  YD   +R TI+ +C
Sbjct:  314 ETGLGYGKWLHGEAVSLGMVMAVDMSVRLGWVDREVYSRTVGLLQRAGLPVALPEESGMDLEKFEATMSLDKKVSDGVLRLILLKGALGHCVFTSAYDVEVLRETIRAYC 423          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: UPI001F5CC96F (3-dehydroquinate synthase, chloroplastic n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CC96F)

HSP 1 Score: 135 bits (341), Expect = 2.440e-34
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFCD 345
            +TGLGYG  LHGEAVA G  MAADMS RLGW++  +  RT  ++ KA LPV  P G  M M+KF N MAVDKKV+DG LRLILLKGPLGGC+ TG YD  A+  T++ FCD
Sbjct:  177 ETGLGYGEWLHGEAVAAGTVMAADMSYRLGWIDESIQKRTFDILEKAKLPVAPPKG--MTMEKFRNIMAVDKKVADGLLRLILLKGPLGGCVFTGEYDRKALDETLRAFCD 285          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A7S4J2A1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J2A1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.550e-33
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDF 339
            + G GYG  LHGEAVAIG  MAA MS R+GW++ ELV RT  +M  A LP ELP+   MD + FL+AM+VDKKV+DG+LRLILLKG LG C+ TG +D+ AM ATI++F
Sbjct:  224 ENGSGYGVWLHGEAVAIGTAMAATMSARMGWIDEELVKRTYTIMHAANLPTELPVDSPMDTETFLDAMSVDKKVADGQLRLILLKGDLGNCVFTGDFDKDAMTATIEEF 332          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A4D9CYT3_9STRA (DHQ_synthase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYT3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.140e-33
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFC 342
            +TGLGYG+ LHGEAV++GM MA DMS RLGWV+RE+  RTV L+ +AGLPV LP   GMD++KF   M++DKKVSDG LRLILLKG LG C+ T  YD   +R TI+ +C
Sbjct:  636 ETGLGYGKWLHGEAVSLGMVMAVDMSVRLGWVDREVYSRTVGLLQRAGLPVALPEESGMDLEKFEATMSLDKKVSDGVLRLILLKGALGQCVFTSAYDVEVLRETIRAYC 745          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A7S1E6B7_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6B7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.000e-33
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDF 339
            + G GYG  LHGEAVAIG  MAA MS  +GW++  LV R   ++++A LPVELP+   MD  KFL  M+VDKKV+DG+LRLILLKG LG C+ TG +D+ AM  T+ +F
Sbjct:   64 ENGSGYGTWLHGEAVAIGTAMAATMSAEIGWIDEALVKRIYDILLRAKLPVELPLDSPMDKSKFLKLMSVDKKVADGQLRLILLKGSLGNCVFTGDFDQNAMEKTVDEF 172          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A7S4J271_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J271_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.450e-33
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDF 339
            + G GYG  LHGEAVAIG  MAA MS R+GW++ ELV RT  +M  A LP ELP+   MD + FL+AM+VDKKV+DG+LRLILLKG LG C+ TG +D+ AM ATI++F
Sbjct:  310 ENGSGYGVWLHGEAVAIGTAMAATMSARMGWIDEELVKRTYTIMHAANLPTELPVDSPMDTETFLDAMSVDKKVADGQLRLILLKGDLGNCVFTGDFDKDAMTATIEEF 418          
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Match: A0A7S2GX65_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GX65_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.230e-32
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   13 QTGLGYGRLLHGEAVAIGMHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAMAVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDF 339
            + G GYG  LHGEAVAIG  MAA MS R+GW++  L+ RT  +++KA LPVELP    M+ + FL  M+VDKKV+DG+LRLILLKG LG C+ TG +DE AM+ATI DF
Sbjct:  317 ENGSGYGTWLHGEAVAIGTAMAATMSARMGWIDEPLLKRTYDILMKANLPVELPPDSPMNKETFLKLMSVDKKVADGQLRLILLKGDLGNCVFTGEFDEEAMKATIDDF 425          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11558.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B2_9PHAE1.120e-5885.84DHQ_synthase domain-containing protein n=2 Tax=Ect... [more]
A0A835Z318_9STRA1.230e-4067.263-Dehydroquinate synthase n=1 Tax=Tribonema minus ... [more]
A0A446TAZ8_TRITD6.230e-3560.36DHQ_synthase domain-containing protein n=2 Tax=Tri... [more]
W7TCV4_9STRA1.920e-3461.823-dehydroquinate synthase n=1 Tax=Nannochloropsis ... [more]
UPI001F5CC96F2.440e-3462.163-dehydroquinate synthase, chloroplastic n=1 Tax=L... [more]
A0A7S4J2A1_9STRA1.550e-3360.55Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A4D9CYT3_9STRA3.140e-3361.82DHQ_synthase domain-containing protein n=1 Tax=Nan... [more]
A0A7S1E6B7_9STRA5.000e-3355.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S4J271_9STRA7.450e-3360.55Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2GX65_9STRA1.230e-3259.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11558contigM-pyrifera_M_contig11558:6841..9411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.1e-41
Seed eggNOG ortholog2880.D8LEE6
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
Ec32 ortholog description3-Dehydroquinate Synthase
Ec32 orthologEc-00_002010.1
EC4.2.3.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size927
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11558.3227.1prot_M-pyrifera_M_contig11558.3227.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11558 7414..9345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.396153-UTR-M-pyrifera_M_contig11558:6840..74131622815671.396153-UTR-M-pyrifera_M_contig11558:6840..7413Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 6841..7413 -
1692277514.4275787-UTR-M-pyrifera_M_contig11558:6840..74131692277514.4275787-UTR-M-pyrifera_M_contig11558:6840..7413Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 6841..7413 -
1622815671.432249-UTR-M-pyrifera_M_contig11558:9345..94111622815671.432249-UTR-M-pyrifera_M_contig11558:9345..9411Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 9346..9411 -
1692277514.4622571-UTR-M-pyrifera_M_contig11558:9345..94111692277514.4622571-UTR-M-pyrifera_M_contig11558:9345..9411Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 9346..9411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.4102886-CDS-M-pyrifera_M_contig11558:7413..75571622815671.4102886-CDS-M-pyrifera_M_contig11558:7413..7557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 7414..7557 -
1692277514.4407842-CDS-M-pyrifera_M_contig11558:7413..75571692277514.4407842-CDS-M-pyrifera_M_contig11558:7413..7557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 7414..7557 -
1622815671.4208398-CDS-M-pyrifera_M_contig11558:9201..93451622815671.4208398-CDS-M-pyrifera_M_contig11558:9201..9345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 9202..9345 -
1692277514.4513993-CDS-M-pyrifera_M_contig11558:9201..93451692277514.4513993-CDS-M-pyrifera_M_contig11558:9201..9345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 9202..9345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11558.3227.1

>prot_M-pyrifera_M_contig11558.3227.1 ID=prot_M-pyrifera_M_contig11558.3227.1|Name=mRNA_M-pyrifera_M_contig11558.3227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MHMAADMSCRLGWVERELVDRTVKLMVKAGLPVELPMGGGMDMDKFLNAM
AVDKKVSDGELRLILLKGPLGGCLMTGHYDEGAMRATIQDFCDRQ*
back to top

mRNA from alignment at M-pyrifera_M_contig11558:6841..9411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11558.3227.1 ID=mRNA_M-pyrifera_M_contig11558.3227.1|Name=mRNA_M-pyrifera_M_contig11558.3227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2571bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:6841..9411- (Macrocystis pyrifera P11B4 male)
GGCGGCGTGTCTCAGACCGGCCTTGGTTACGGCAGGCTGCTGCACGGGGA GGCGGTAGCGATTGGGATGCACATGGCGGCGGACATGTCTTGTCGCCTGG GGTGGGTGGAGCGGGAGCTCGTGGACAGGACCGTCAAGCTCATGGTGAAG GCGGGGTTGCCTGTCGAGCTTCCGATGGGGGGCGGGATGGACATGGACAA GTTTTTAAACGTGAGGAGAGGGGAGGGGGAGGGGCTGGGGGGGCGGGCGT ACTCATTTGTTGCTTACCTTAGTCCTCTGACCATTGACCACGCATCCCTT TCGAGACGAAGCACCGTTCCTGCTCCTAATAGAAGACACCTCCAACATTT TGGGCGCTGACTACGGGGTATGAAGCCCTGATTTCGTTTCGTCTCGTTTC GGTTTTTTTTTTTGGAACTAGCTATAACTGCACCCAAAGATCTTAAGGAT GAAATACTTGGGAGCTGAAGTGAGTTGAGTTTCGCAGTAGTGAAGAAGGG GTTAACACCTCGGACAGCTTGGACATCAATTCCCACTCGATGATCTGTTA ATAGATAGTGGGAGCGTGTGATCTGCATGGTCTGGGACATGGTTTCCTCT GTTAGATATGTGCTCACACAAATCTTGCACAGCGTTTCACGGCGGAATAT TAGGATCTAGATGGTGTAGATGATCTATCTGTAGGTGATATATCCGCAGG TGATCTATCTGTAGATAATATATCCGCAGGTGATCTATCTGTGGATGATT TATCTGTAGATGATTTATCTGTGGATGATCTATCTGTAGATGATGTATCT GTAGATGATTTATTTGTGGATGATGTATCTGTAGATGATCTATCCGTAGA TGATTTATCTGTAGATGATCTATCTGTGGATGATTTATCTGAAGAGGATT TATCTGCAGATGATTGATCTGTAGAGGATTTATCTGTAGATGATATATAT GTAGATGATTTATCTGTGGATCTATCTGTGGATGCTATACCTATAGATGG TTTGTATGTGGATGATTTATCTGTAGATGGTTAGTATGTTGGATGATTTA TCTGTAGATGATATGTCTGTGGATGATTTATCTGTAGATGATTTATCTGT AGATGATTTATGTGCAGATGATTGATCTGTAGATGATTTACCTGTAGATG ATCTATCCGTAGATGATCTATCTGCGGATGATCTAATCTACAGATAGAGC GTATTCTATCCGACGTGTGAAAGCGCCAAAGAGTTATTATAGCTGGGAAG TGTTGCAATGTTCTCTTGTGTTGTGTTGTGTGTATTTTGTTTTTGTACTT GTCGAGCTTTCGGCTTTTACCCCTGTTGTCCAAAATCATCGACCTCAAAG CTGTCTTTTTCAAAATTCAATAATGTTAGGGGCGGGATGGACATAGACAT GGACATGGACATGCTTTTTTTTAACAGTTGGGAGAGTAGTCAAGCAAGAC GCGCCTTGTGTGTTCTCGTTTTTTTCGCCAAAAAAGGAGGAGGAAGAGGC GCGGTTGATATTTACCACTATGCTTGTACCGAAATGTATGGACCGTTTGT GTGTTCATATTCAGTCAGAAATAGTGTTTATGTTTAGGTACATAGTGGTA TGTATTTGTTTTTGTTTTGTCTCGGTTTTCTTGTTTCGGTTCGTTTTGGT TCGCGCGGGTGGACGGACGGACGCACGGATGGGCGGGTGGAAGAATGAAT GTCTTCGTGGGGGGGGGCTGATACTAGCACGCACGTGCTGCATACTAATG CCTGCCGTCGTTGCCTGCCCTGCCCTGCTTGCTTGCCTGCTTGCCTCTGC CTGCCTTTGATCCGATCACTTTTCCTTTCTTTTCTTTTTTCGATGTATTT TCAGGCGATGGCCGTCGACAAGAAGGTTTCGGACGGAGAGCTGCGGTTGA TTCTTCTCAAGGGTCCCCTGGGCGGCTGCTTGATGACTGGCCACTACGAT GAGGGCGCCATGCGGGCCACCATCCAGGACTTTTGCGATCGGCAATGATT TGACGCTCTCCTTTTTTTTTTCTCTCGGCGCGTTTGGTCCCTCGGTCGCC GCTACAGAATTCTTGTTGAGTGTACGAGGTGTACGAGATGGTTACATGTA ACGGCCAGAGAATACGCAGAGACAACAGGTCTAGTTCTCCCGTGAACCCT TTTTTTTATGTTTGCCGGGAGGTGCCCTATGATACGCTTCTCTGCCTTCT CTTGTTCTTGTGCTCTGCTCCACGTCTACATGTACCCTCTTCCTTCCCTG TCACCACGAGTGCCCATCCATGAACCCATCCCGGCCCCAGCCCGTCCTCC CAGAGTCAGTACGTACTAGACACGTTTGTTTTCTTTGGTATGCGTGTCTG ATTTTGTTTTTGTTTTTTTTCCCTCTGGGTTTTGTTTTCGGGCCCACCCA GGACGTCCGTTTCTTTGTCGTCGCCTTCGGTTTTTTCGTGTCTGATGTTT GTTGCTGTTGCTGTTGTTGGCTTTCTTTATCGCAGTTTCTTCGGCGCCCG TCCGCACTTTCTGTGTCTTTCCTGTCTGCTACCTGGTACGCTTTTCGAGG GTATTATAATCACAACGCCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11558:6841..9411-

>mRNA_M-pyrifera_M_contig11558.3227.1 ID=mRNA_M-pyrifera_M_contig11558.3227.1|Name=mRNA_M-pyrifera_M_contig11558.3227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:6841..9411- (Macrocystis pyrifera P11B4 male)
ATGCACATGGCGGCGGACATGTCTTGTCGCCTGGGGTGGGTGGAGCGGGA
GCTCGTGGACAGGACCGTCAAGCTCATGGTGAAGGCGGGGTTGCCTGTCG
AGCTTCCGATGGGGGGCGGGATGGACATGGACAAGTTTTTAAACATGCAC
ATGGCGGCGGACATGTCTTGTCGCCTGGGGTGGGTGGAGCGGGAGCTCGT
GGACAGGACCGTCAAGCTCATGGTGAAGGCGGGGTTGCCTGTCGAGCTTC
CGATGGGGGGCGGGATGGACATGGACAAGTTTTTAAACGCGATGGCCGTC
GACAAGAAGGTTTCGGACGGAGAGCTGCGGTTGATTCTTCTCAAGGGTCC
CCTGGGCGGCTGCTTGATGACTGGCCACTACGATGAGGGCGCCATGCGGG
CCACCATCCAGGACTTTTGCGATCGGCAATGAGCGATGGCCGTCGACAAG
AAGGTTTCGGACGGAGAGCTGCGGTTGATTCTTCTCAAGGGTCCCCTGGG
CGGCTGCTTGATGACTGGCCACTACGATGAGGGCGCCATGCGGGCCACCA
TCCAGGACTTTTGCGATCGGCAATGA
back to top