mRNA_M-pyrifera_M_contig115019.3123.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115019.3123.1
Unique NamemRNA_M-pyrifera_M_contig115019.3123.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A517W7P8_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W7P8_9PLAN)

HSP 1 Score: 329 bits (844), Expect = 1.250e-109
Identity = 184/189 (97.35%), Postives = 187/189 (98.94%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KNILLLARGKKITQAYI+SLKKRGIRSVRVHERDLSNLMLP+GESQQSEPG+ARRLKRRRTQLRTS SSRKRQ PETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL
Sbjct:   38 KNILLLARGKKITQAYIDSLKKRGIRSVRVHERDLSNLMLPDGESQQSEPGAARRLKRRRTQLRTSASSRKRQVPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 226          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A518A1W5_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A1W5_9PLAN)

HSP 1 Score: 283 bits (724), Expect = 1.510e-91
Identity = 150/189 (79.37%), Postives = 164/189 (86.77%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KNILLLARGKKIT+AYIESLKKRGI SVRVHERDLSNLML  GESQQSEPGSAR+L RR  QLR + S RK+  PETR +GSPWQIQTSSFLHQVSPVQT+DY PALQSKYH+QF V+TKAT EIY+QLLITT++SMSQ++NM        SDDLDLFVLEGTAPVE GNLCRH LQMSSLA+AMGTQL
Sbjct:   38 KNILLLARGKKITKAYIESLKKRGIHSVRVHERDLSNLMLAPGESQQSEPGSARKLNRRLNQLRATTSRRKQSEPETRSSGSPWQIQTSSFLHQVSPVQTSDYSPALQSKYHKQFEVMTKATSEIYRQLLITTTISMSQIDNMTSVSLAQLSDDLDLFVLEGTAPVEQGNLCRHSLQMSSLAMAMGTQL 226          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A517RB01_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RB01_9PLAN)

HSP 1 Score: 206 bits (523), Expect = 2.080e-61
Identity = 111/190 (58.42%), Postives = 144/190 (75.79%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAP-ETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KN+LLLA GK IT+  IE+LKKRGIRSVRVHERDL NLML  GESQ S+  S + ++R+R QL +++S+ ++QA  ET++  SPWQIQTSSFLH++ PV    Y   L++KY EQF VLTK T +IYKQLL+T  +SM Q+ ++        + D+DLFVLEG AP+++GN CRHGLQMSSLA+A+GTQL
Sbjct:   38 KNLLLLASGKTITKGTIENLKKRGIRSVRVHERDLHNLMLAPGESQDSQSDSPQDIRRKRLQLASAISAAQKQAALETQRTHSPWQIQTSSFLHEIRPVPVAGYSNRLKTKYREQFTVLTKITDDIYKQLLLTKRISMPQIYDITSMSFSQMAQDMDLFVLEGIAPIDNGNFCRHGLQMSSLAMAIGTQL 227          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A517W268_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W268_9PLAN)

HSP 1 Score: 202 bits (514), Expect = 4.060e-60
Identity = 105/188 (55.85%), Postives = 140/188 (74.47%), Query Frame = 1
Query:    4 NILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            NILLLA GK IT+  IE+LKKRGIRSVRVHERDL NLMLP GESQ SEP S +  +R++ +L++  ++ ++Q  +T++  SPW IQTSSFLH++ PVQ + Y   ++++Y EQF  LTK TG +YKQLL T  +SM Q+ ++        ++D+DLFVLEG  P++ GN CRHGLQMSSLA+A+GTQL
Sbjct:   39 NILLLASGKTITKGTIENLKKRGIRSVRVHERDLQNLMLPPGESQNSEPKSNQNKRRQKIRLQSVQAASQKQEMDTQRTDSPWHIQTSSFLHEIKPVQNSSYSTEMKNQYREQFTALTKITGSVYKQLLSTKQISMRQIYDITNISFVQMAEDMDLFVLEGMTPIDVGNFCRHGLQMSSLAMAIGTQL 226          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A6C6Z3_9PLAN (HD-GYP domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6C6Z3_9PLAN)

HSP 1 Score: 190 bits (482), Expect = 2.060e-55
Identity = 106/189 (56.08%), Postives = 133/189 (70.37%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KNILLLA GK IT+  I++LKKRGIRSVRVHERDLSNL L  GE+Q S   ++ RL+        S   + RQA ET++  SPWQIQ+ SFLH+V+P  TT Y P LQ++Y ++F VLTK T +IYKQ+L  + +S+SQ+ ++          D+DLFVLEG  PV  GN CRHGLQMSSLA+AMGTQL
Sbjct:   38 KNILLLASGKSITKTTIQNLKKRGIRSVRVHERDLSNLTLAPGENQSSGSTASLRLQ--------SQKLKNRQADETKRTNSPWQIQSQSFLHEVTPPATTAYSPTLQTEYRKEFAVLTKVTDDIYKQILGASRISLSQIQSVTNSSFSQMMQDMDLFVLEGITPVALGNFCRHGLQMSSLAMAMGTQL 218          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A2E2BVW9_9PLAN (HD-GYP domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BVW9_9PLAN)

HSP 1 Score: 190 bits (483), Expect = 6.490e-55
Identity = 106/189 (56.08%), Postives = 134/189 (70.90%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KNILLLA GKKITQA I++LK RGIR+VRVHERDLSNL L  GESQ S   S+ RL+ ++ + R+  +S   QA +T +  SPWQIQ  SFLH+V+P   T Y P LQ +Y ++F VLTK T +IY+Q+L  + +S+SQ+ N+          D+DLFVLEG  PV  GN CRHGLQMSSLA+A+GTQL
Sbjct:   99 KNILLLASGKKITQATIQNLKNRGIRNVRVHERDLSNLTLSPGESQSSGFTSSLRLRSQKLRKRSGGTSAPGQAADTERTNSPWQIQPQSFLHEVTPPAATAYSPELQQEYRKEFAVLTKVTDDIYRQVLGASRISLSQIRNVTDCSFSKMIQDMDLFVLEGITPVALGNFCRHGLQMSSLAMAIGTQL 287          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A518I7M4_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I7M4_9PLAN)

HSP 1 Score: 188 bits (478), Expect = 1.040e-54
Identity = 105/190 (55.26%), Postives = 137/190 (72.11%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAP-ETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KN+LLLA GK IT+  IE+LKKRGIRSVRVHERDL NLML  GESQ ++  S +  + +R QL ++ ++ ++QA  ET++  SPWQIQTSSFL+++ PV  + Y   L++KY EQF V TK T +IY QLLIT  +SM Q+ ++          D+DLFVLEG  P+E+GN CRH LQMSSLA+A+GTQL
Sbjct:   38 KNLLLLASGKTITKGTIENLKKRGIRSVRVHERDLHNLMLGPGESQNTQSDSLQENRLKRLQLASAYTAAQKQAALETQRTDSPWQIQTSSFLNELKPVPVSRYSTGLKNKYQEQFTVQTKITNDIYTQLLITKRISMPQIYDITNISFSQMRQDMDLFVLEGITPIENGNFCRHDLQMSSLAMAIGTQL 227          
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Match: A0A517VCX0_9PLAN (Cyclic di-GMP phosphodiesterase response regulator RpfG n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VCX0_9PLAN)

HSP 1 Score: 188 bits (477), Expect = 1.370e-54
Identity = 103/189 (54.50%), Postives = 133/189 (70.37%), Query Frame = 1
Query:    1 KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEPGSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQTTDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMXXXXXXXXSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL 567
            KNILLLA GK IT+  I+SLKKRGIR+VRVH+RDLSNL L  GESQ S   S+ +L+ ++ + R    S  RQ  +T +  SPWQIQ+ SFLH+V+P   T Y P LQ +Y ++F VLTK T +IY+Q+L ++ +S SQ+ ++          D+DLFVLEG  PV  GN+CRHGLQMSSLA+AMGTQL
Sbjct:   38 KNILLLASGKSITKTTIQSLKKRGIRNVRVHDRDLSNLTLAPGESQSSGFTSSLQLRSQKLKNRAGDPSSNRQVADTERTNSPWQIQSQSFLHEVTPPTATAYSPTLQKEYRKEFAVLTKLTDDIYRQILASSRISTSQIQSVTNSSFSQMRQDMDLFVLEGITPVALGNICRHGLQMSSLAMAMGTQL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115019.3123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A517W7P8_9PLAN1.250e-10997.35Cyclic di-GMP phosphodiesterase response regulator... [more]
A0A518A1W5_9PLAN1.510e-9179.37Cyclic di-GMP phosphodiesterase response regulator... [more]
A0A517RB01_9PLAN2.080e-6158.42Cyclic di-GMP phosphodiesterase response regulator... [more]
A0A517W268_9PLAN4.060e-6055.85Cyclic di-GMP phosphodiesterase response regulator... [more]
A6C6Z3_9PLAN2.060e-5556.08HD-GYP domain-containing protein n=6 Tax=Planctomy... [more]
A0A2E2BVW9_9PLAN6.490e-5556.08HD-GYP domain-containing protein n=4 Tax=Planctomy... [more]
A0A518I7M4_9PLAN1.040e-5455.26Cyclic di-GMP phosphodiesterase response regulator... [more]
A0A517VCX0_9PLAN1.370e-5454.50Cyclic di-GMP phosphodiesterase response regulator... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115019contigM-pyrifera_M_contig115019:2..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score195.3
Seed ortholog evalue2.6e-47
Seed eggNOG ortholog344747.PM8797T_03895
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HD domain
EggNOG OGs2J0TK@203682,COG2206@1,COG2206@2
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.2717624-CDS-M-pyrifera_M_contig115019:1..5681622815666.2717624-CDS-M-pyrifera_M_contig115019:1..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115019 2..568 -
1692277512.160906-CDS-M-pyrifera_M_contig115019:1..5681692277512.160906-CDS-M-pyrifera_M_contig115019:1..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115019 2..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115019.3123.1prot_M-pyrifera_M_contig115019.3123.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115019 2..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115019.3123.1

>prot_M-pyrifera_M_contig115019.3123.1 ID=prot_M-pyrifera_M_contig115019.3123.1|Name=mRNA_M-pyrifera_M_contig115019.3123.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
KNILLLARGKKITQAYIESLKKRGIRSVRVHERDLSNLMLPEGESQQSEP
GSARRLKRRRTQLRTSVSSRKRQAPETRQAGSPWQIQTSSFLHQVSPVQT
TDYVPALQSKYHEQFRVLTKATGEIYKQLLITTSVSMSQLNNMTDVSLAQ
LSDDLDLFVLEGTAPVEDGNLCRHGLQMSSLALAMGTQL
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mRNA from alignment at M-pyrifera_M_contig115019:2..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115019.3123.1 ID=mRNA_M-pyrifera_M_contig115019.3123.1|Name=mRNA_M-pyrifera_M_contig115019.3123.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig115019:2..568- (Macrocystis pyrifera P11B4 male)
AAAAACATCCTGCTGCTGGCCCGCGGTAAGAAAATCACTCAGGCATATAT TGAAAGCCTGAAAAAGCGTGGTATCCGCAGCGTGCGGGTCCACGAACGGG ACCTGTCCAATCTGATGCTTCCCGAAGGGGAAAGCCAGCAGTCAGAACCA GGGTCGGCGCGAAGACTCAAACGCCGACGGACTCAACTGCGCACCAGCGT TTCCAGCAGAAAGCGTCAGGCGCCTGAAACCCGACAGGCAGGATCCCCCT GGCAGATTCAGACCAGTTCTTTCCTGCACCAGGTCAGTCCGGTTCAAACC ACGGACTACGTCCCTGCCCTGCAATCGAAATACCACGAACAATTCCGAGT ACTGACCAAAGCGACCGGGGAGATCTACAAACAGCTGCTGATCACAACCA GTGTCAGCATGTCACAGCTCAATAACATGACTGATGTTTCTCTCGCACAA CTGTCTGATGATCTGGACCTGTTTGTGCTGGAAGGGACGGCACCTGTAGA GGATGGAAATCTCTGCAGACACGGCTTGCAGATGTCGAGCCTGGCCCTGG CGATGGGCACACAGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115019:2..568-

>mRNA_M-pyrifera_M_contig115019.3123.1 ID=mRNA_M-pyrifera_M_contig115019.3123.1|Name=mRNA_M-pyrifera_M_contig115019.3123.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig115019:2..568- (Macrocystis pyrifera P11B4 male)
AAAAACATCCTGCTGCTGGCCCGCGGTAAGAAAATCACTCAGGCATATAT
TGAAAGCCTGAAAAAGCGTGGTATCCGCAGCGTGCGGGTCCACGAACGGG
ACCTGTCCAATCTGATGCTTCCCGAAGGGGAAAGCCAGCAGTCAGAACCA
GGGTCGGCGCGAAGACTCAAACGCCGACGGACTCAACTGCGCACCAGCGT
TTCCAGCAGAAAGCGTCAGGCGCCTGAAACCCGACAGGCAGGATCCCCCT
GGCAGATTCAGACCAGTTCTTTCCTGCACCAGGTCAGTCCGGTTCAAACC
ACGGACTACGTCCCTGCCCTGCAATCGAAATACCACGAACAATTCCGAGT
ACTGACCAAAGCGACCGGGGAGATCTACAAACAGCTGCTGATCACAACCA
GTGTCAGCATGTCACAGCTCAATAACATGACTGATGTTTCTCTCGCACAA
CTGTCTGATGATCTGGACCTGTTTGTGCTGGAAGGGACGGCACCTGTAGA
GGATGGAAATCTCTGCAGACACGGCTTGCAGATGTCGAGCCTGGCCCTGG
CGATGGGCACACAGTTGAAAAACATCCTGCTGCTGGCCCGCGGTAAGAAA
ATCACTCAGGCATATATTGAAAGCCTGAAAAAGCGTGGTATCCGCAGCGT
GCGGGTCCACGAACGGGACCTGTCCAATCTGATGCTTCCCGAAGGGGAAA
GCCAGCAGTCAGAACCAGGGTCGGCGCGAAGACTCAAACGCCGACGGACT
CAACTGCGCACCAGCGTTTCCAGCAGAAAGCGTCAGGCGCCTGAAACCCG
ACAGGCAGGATCCCCCTGGCAGATTCAGACCAGTTCTTTCCTGCACCAGG
TCAGTCCGGTTCAAACCACGGACTACGTCCCTGCCCTGCAATCGAAATAC
CACGAACAATTCCGAGTACTGACCAAAGCGACCGGGGAGATCTACAAACA
GCTGCTGATCACAACCAGTGTCAGCATGTCACAGCTCAATAACATGACTG
ATGTTTCTCTCGCACAACTGTCTGATGATCTGGACCTGTTTGTGCTGGAA
GGGACGGCACCTGTAGAGGATGGAAATCTCTGCAGACACGGCTTGCAGAT
GTCGAGCCTGGCCCTGGCGATGGGCACACAGTTG
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