mRNA_M-pyrifera_M_contig11489.3096.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.720e-18 Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAER 258
+ RM D RLPKR++ GEM G GY G QE DW+ L ED+ FG+ E W+E+A+ W+ ++E+G F RKWH + EASA+R
Sbjct: 141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKR 230
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 7.750e-17 Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAI--EG--WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAER 258
VTRM D RLPKR++ G M G GY G QE DW+ L E + F + EG W+E+A+ W+ +VE+G F RKWH + EASA+R
Sbjct: 68 VTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.260e-15 Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKE 243
V RMGD RLPKR++ G M G GY G QE DW+ L ED+ FG+ E W+E+A+ W+ ++E+G F RKWH + E
Sbjct: 802 VMRMGDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 886
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 6.470e-8 Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGV 204
V RM D RLPKR++ GEM G Y G QE W+ + ED+ F + E W+E+A+ + W +VE+G
Sbjct: 123 VMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A183ST04_SCHSO (C2H2-type domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183ST04_SCHSO) HSP 1 Score: 56.2 bits (134), Expect = 3.130e-7 Identity = 28/87 (32.18%), Postives = 42/87 (48.28%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAERH 261
+ RM DERLPKR+ +G++ G G Q+W + L + +K+ I W + Q W R V+ G I+ W K A R+
Sbjct: 28 LVRMDDERLPKRLFYGDIATGARRQGGQKWRYKDTLKKSLKQLQINPVTWEDLTQDRTAWRRPVKTGAAIYEANWIATAKAKRAARN 114
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A0L8HWY0_OCTBM (Uncharacterized protein (Fragment) n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8HWY0_OCTBM) HSP 1 Score: 52.4 bits (124), Expect = 6.220e-7 Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEI 210
VTR+ D+RLP R++FGE+ +GK G Q+ + L +K F I W ++A GW V +G I
Sbjct: 2 VTRLSDDRLPNRLLFGELPKGKRSQGGQKKRFEDILKTSMKAFNIDHATWEQSALDREGWRLAVHKGASI 71
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: UPI0013901FBB (uncharacterized protein K02A2.6-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901FBB) HSP 1 Score: 55.1 bits (131), Expect = 8.080e-7 Identity = 28/75 (37.33%), Postives = 37/75 (49.33%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIFTRKW 225
V RM DERLPK+++FGE+ GK G Q+ + L +K F I W AQ GW R + +G W
Sbjct: 52 VARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTSWELLAQNRQGWRRVISDGAAACEANW 126
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE) HSP 1 Score: 53.1 bits (126), Expect = 3.940e-6 Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
+ RM D RLPKR+++ E+VEGK G Q+ + L +K F I W AAQ W + G ++
Sbjct: 302 LVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLY 372
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A0V0J8T7_SCHSO (Uncharacterized protein (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J8T7_SCHSO) HSP 1 Score: 50.1 bits (118), Expect = 7.570e-6 Identity = 24/71 (33.80%), Postives = 37/71 (52.11%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
+ RM DERLPKR+ +G++ G G Q+ + L + +K+ I W + AQ W R V+ G I+
Sbjct: 3 LVRMDDERLPKRLFYGDVATGSRRQGGQKRRYKDTLKKSLKQLQINSATWEDLAQDRPAWRRSVKTGSAIY 73
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A183SRM7_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SRM7_SCHSO) HSP 1 Score: 49.7 bits (117), Expect = 1.550e-5 Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 1
Query: 1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRY---LLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
+ RM DERLPKR+ +G++ G S RQE RY L +K+ I W E Q W RRV+ G I+
Sbjct: 9 LVRMDDERLPKRLFYGDVDTG---SRRQEGKVRRYKDTLKTSLKQLQINSATWEEIVQNRPAWRRRVKTGAAIY 79 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11489.3096.1 >prot_M-pyrifera_M_contig11489.3096.1 ID=prot_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp MGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAback to top mRNA from alignment at M-pyrifera_M_contig11489:323..583+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11489.3096.1 ID=mRNA_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig11489:323..583+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11489:323..583+ >mRNA_M-pyrifera_M_contig11489.3096.1 ID=mRNA_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig11489:323..583+ (Macrocystis pyrifera P11B4 male)back to top |