mRNA_M-pyrifera_M_contig11489.3096.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11489.3096.1
Unique NamemRNA_M-pyrifera_M_contig11489.3096.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.720e-18
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAER 258
            + RM D RLPKR++ GEM  G GY G QE DW+  L ED+  FG+  E     W+E+A+    W+ ++E+G   F RKWH  + EASA+R
Sbjct:  141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKR 230          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.750e-17
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAI--EG--WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAER 258
            VTRM D RLPKR++ G M  G GY G QE DW+  L E +  F +    EG  W+E+A+    W+ +VE+G   F RKWH  + EASA+R
Sbjct:   68 VTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.260e-15
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGVEIFTRKWHMDKKE 243
            V RMGD RLPKR++ G M  G GY G QE DW+  L ED+  FG+  E     W+E+A+    W+ ++E+G   F RKWH  + E
Sbjct:  802 VMRMGDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 886          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.470e-8
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEG----WREAAQKAGGWFRRVEEGV 204
            V RM D RLPKR++ GEM  G  Y G QE  W+  + ED+  F +  E     W+E+A+ +  W  +VE+G 
Sbjct:  123 VMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A183ST04_SCHSO (C2H2-type domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183ST04_SCHSO)

HSP 1 Score: 56.2 bits (134), Expect = 3.130e-7
Identity = 28/87 (32.18%), Postives = 42/87 (48.28%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIFTRKWHMDKKEASAERH 261
            + RM DERLPKR+ +G++  G    G Q+W +   L + +K+  I    W +  Q    W R V+ G  I+   W    K   A R+
Sbjct:   28 LVRMDDERLPKRLFYGDIATGARRQGGQKWRYKDTLKKSLKQLQINPVTWEDLTQDRTAWRRPVKTGAAIYEANWIATAKAKRAARN 114          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A0L8HWY0_OCTBM (Uncharacterized protein (Fragment) n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8HWY0_OCTBM)

HSP 1 Score: 52.4 bits (124), Expect = 6.220e-7
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEI 210
            VTR+ D+RLP R++FGE+ +GK   G Q+  +   L   +K F I    W ++A    GW   V +G  I
Sbjct:    2 VTRLSDDRLPNRLLFGELPKGKRSQGGQKKRFEDILKTSMKAFNIDHATWEQSALDREGWRLAVHKGASI 71          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: UPI0013901FBB (uncharacterized protein K02A2.6-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901FBB)

HSP 1 Score: 55.1 bits (131), Expect = 8.080e-7
Identity = 28/75 (37.33%), Postives = 37/75 (49.33%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIFTRKW 225
            V RM DERLPK+++FGE+  GK   G Q+  +   L   +K F I    W   AQ   GW R + +G       W
Sbjct:   52 VARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTSWELLAQNRQGWRRVISDGAAACEANW 126          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 53.1 bits (126), Expect = 3.940e-6
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
            + RM D RLPKR+++ E+VEGK   G Q+  +   L   +K F I    W  AAQ    W   +  G  ++
Sbjct:  302 LVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLY 372          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A0V0J8T7_SCHSO (Uncharacterized protein (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J8T7_SCHSO)

HSP 1 Score: 50.1 bits (118), Expect = 7.570e-6
Identity = 24/71 (33.80%), Postives = 37/71 (52.11%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
            + RM DERLPKR+ +G++  G    G Q+  +   L + +K+  I    W + AQ    W R V+ G  I+
Sbjct:    3 LVRMDDERLPKRLFYGDVATGSRRQGGQKRRYKDTLKKSLKQLQINSATWEDLAQDRPAWRRSVKTGSAIY 73          
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Match: A0A183SRM7_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SRM7_SCHSO)

HSP 1 Score: 49.7 bits (117), Expect = 1.550e-5
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 1
Query:    1 VTRMGDERLPKRVMFGEMVEGKGYSGRQEWDWMRY---LLEDIKEFGIAIEGWREAAQKAGGWFRRVEEGVEIF 213
            + RM DERLPKR+ +G++  G   S RQE    RY   L   +K+  I    W E  Q    W RRV+ G  I+
Sbjct:    9 LVRMDDERLPKRLFYGDVDTG---SRRQEGKVRRYKDTLKTSLKQLQINSATWEEIVQNRPAWRRRVKTGAAIY 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11489.3096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA1_9PHAE2.720e-1845.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX67_9PHAE7.750e-1746.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L144_9PHAE1.260e-1544.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6M5_9PHAE6.470e-840.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A183ST04_SCHSO3.130e-732.18C2H2-type domain-containing protein n=1 Tax=Schist... [more]
A0A0L8HWY0_OCTBM6.220e-737.14Uncharacterized protein (Fragment) n=1 Tax=Octopus... [more]
UPI0013901FBB8.080e-737.33uncharacterized protein K02A2.6-like n=1 Tax=Nemat... [more]
A0A6P4ZXC7_BRABE3.940e-635.21protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]
A0A0V0J8T7_SCHSO7.570e-633.80Uncharacterized protein (Fragment) n=1 Tax=Schisto... [more]
A0A183SRM7_SCHSO1.550e-539.19Uncharacterized protein n=1 Tax=Schistocephalus so... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11489contigM-pyrifera_M_contig11489:323..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.8492205-UTR-M-pyrifera_M_contig11489:322..3311622815664.8492205-UTR-M-pyrifera_M_contig11489:322..331Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11489 323..331 +
1692277511.4388885-UTR-M-pyrifera_M_contig11489:322..3311692277511.4388885-UTR-M-pyrifera_M_contig11489:322..331Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11489 323..331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.8606024-CDS-M-pyrifera_M_contig11489:331..5831622815664.8606024-CDS-M-pyrifera_M_contig11489:331..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11489 332..583 +
1692277511.4493434-CDS-M-pyrifera_M_contig11489:331..5831692277511.4493434-CDS-M-pyrifera_M_contig11489:331..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11489 332..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11489.3096.1prot_M-pyrifera_M_contig11489.3096.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11489 332..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11489.3096.1

>prot_M-pyrifera_M_contig11489.3096.1 ID=prot_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MGDERLPKRVMFGEMVEGKGYSGRQEWDWMRYLLEDIKEFGIAIEGWREA
AQKAGGWFRRVEEGVEIFTRKWHMDKKEASAERH
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mRNA from alignment at M-pyrifera_M_contig11489:323..583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11489.3096.1 ID=mRNA_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig11489:323..583+ (Macrocystis pyrifera P11B4 male)
GTGACACGCATGGGAGACGAGCGTCTGCCGAAAAGAGTGATGTTTGGGGA GATGGTCGAGGGAAAGGGATACTCCGGAAGACAGGAGTGGGACTGGATGA GGTACCTTCTGGAGGACATCAAGGAGTTTGGCATCGCGATCGAAGGGTGG CGCGAGGCGGCACAGAAAGCTGGCGGATGGTTCCGACGGGTCGAGGAAGG GGTGGAGATCTTCACGCGGAAATGGCATATGGATAAGAAGGAGGCCTCTG CAGAACGGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11489:323..583+

>mRNA_M-pyrifera_M_contig11489.3096.1 ID=mRNA_M-pyrifera_M_contig11489.3096.1|Name=mRNA_M-pyrifera_M_contig11489.3096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig11489:323..583+ (Macrocystis pyrifera P11B4 male)
ATGGGAGACGAGCGTCTGCCGAAAAGAGTGATGTTTGGGGAGATGGTCGA
GGGAAAGGGATACTCCGGAAGACAGGAGTGGGACTGGATGAGGTACCTTC
TGGAGGACATCAAGGAGTTTGGCATCGCGATCGAAGGGTGGCGCGAGGCG
GCACAGAAAGCTGGCGGATGGTTCCGACGGGTCGAGGAAGGGGTGGAGAT
CTTCACGCGGAAATGGCATATGGATAAGAAGGAGGCCTCTGCAGAACGGC
ACATGGGAGACGAGCGTCTGCCGAAAAGAGTGATGTTTGGGGAGATGGTC
GAGGGAAAGGGATACTCCGGAAGACAGGAGTGGGACTGGATGAGGTACCT
TCTGGAGGACATCAAGGAGTTTGGCATCGCGATCGAAGGGTGGCGCGAGG
CGGCACAGAAAGCTGGCGGATGGTTCCGACGGGTCGAGGAAGGGGTGGAG
ATCTTCACGCGGAAATGGCATATGGATAAGAAGGAGGCCTCTGCAGAACG
GCAC
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