mRNA_M-pyrifera_M_contig114786.3070.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114786.3070.1
Unique NamemRNA_M-pyrifera_M_contig114786.3070.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: F4QA28_CAVFA (Autophagy protein 16 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QA28_CAVFA)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-7
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   22 LDRSQDHCTKYKNALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKMQRN 273
            L+ S+D+  K +  +++     ++L++EL  LQ E++  E +  KL  +  ELL+RW++K N +A K+N AN+FY+ M++ + N
Sbjct:  158 LNGSEDNYKKLEYVIEEKTTVTQILKDELSALQAEFLHNESKVIKLEQENGELLERWIRKKNEEASKMNEANDFYHRMVEQREN 241          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A0D2X1H2_CAPO3 (TipD n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1H2_CAPO3)

HSP 1 Score: 56.2 bits (134), Expect = 4.500e-7
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   31 SQDHCTKYKNALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKMQRNTELLQQA 294
            S+  C        +  V  ++LQ+ELQ LQ+E +K+EE++  L V+ + L++RW++K N +A K+N AN FY +++ M++   L+  A
Sbjct:  242 SEKACEDVTARFNESMVAIQILQDELQALQLELLKVEERNKILEVENTSLVERWLRKMNEEALKMNEANMFYESVVDMKKREALMDAA 329          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: F1A5I5_DICPU (ATG16 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A5I5_DICPU)

HSP 1 Score: 55.5 bits (132), Expect = 9.210e-7
Identity = 31/94 (32.98%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 IVQLKLDLDRSQDHCTKYKNALKDLQVT-------KRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLK 261
            I+  ++++DR++    +  +A+K L++T        ++L++EL  LQ EY+  E +  KL  + S L++RW++K N +A K+N AN+FY  M++
Sbjct:  153 IMSKEIEVDRAKQVLQQNDDAIKRLEMTIIEKENVSQILRDELTSLQTEYLHNESKVVKLEQENSSLVERWLRKKNEEASKMNEANDFYQKMVE 246          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A8H7PU92_MORIS (ATG16 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PU92_MORIS)

HSP 1 Score: 55.1 bits (131), Expect = 1.230e-6
Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   64 LKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKMQRNTE 279
            LK   V  +VLQ+EL  LQ+E+   EE++ +L  + SEL+ RW+KK N +A+K+N A  FY ++ +  +N++
Sbjct:   75 LKQKDVAIQVLQDELSTLQLEFSTTEEKNKQLFKENSELVQRWLKKMNEEAEKMNEATMFYESLAEQAKNSD 146          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: D3B8K2_POLPP (Autophagy protein 16 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B8K2_POLPP)

HSP 1 Score: 53.5 bits (127), Expect = 4.370e-6
Identity = 31/94 (32.98%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 IVQLKLDLDRSQDHCTKYKNALKDLQV-------TKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLK 261
            +V  +++L+R +   T  +++ K L+          ++L++EL  LQ E++  E +  KL  + SELL+RW++K N +A K+N AN+FY+ M++
Sbjct:  145 MVSKEIELERVRSMLTSSEDSYKRLEAIIEEKTTVTQILKDELSALQSEFLHNESKVIKLEQENSELLERWIRKKNEEASKMNEANDFYHKMVE 238          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A1X2I5F6_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I5F6_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 8.120e-6
Identity = 29/86 (33.72%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 IVQLKLDLDRSQDHCTKYKNALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNML 258
            + QL     +    C      L++  +T ++LQ+EL  LQ+E    EE++ +L  +  +L+ RWM+K NS+A+K+N A +FY   L
Sbjct:  114 LTQLTEKASKLSSKCELQIEQLREKDITIQILQDELSALQLEITTTEERNQQLTKENLQLVQRWMEKMNSEAEKMNEATQFYETAL 199          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A015IA79_RHIIW (ATG16 domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IA79_RHIIW)

HSP 1 Score: 52.4 bits (124), Expect = 9.120e-6
Identity = 27/68 (39.71%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   61 ALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKM 264
            A+++ +VT ++LQ+E   LQ+E  K++E+   L  +  +LL RW+KK N +A+K+N AN+FY + L++
Sbjct:  163 AIREKEVTIQLLQDENATLQLEIGKIDERMKDLERENGQLLQRWLKKMNEEAEKMNEANQFYESALEV 230          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: U9SGU9_RHIID (ATG16 domain-containing protein n=11 Tax=Glomeraceae TaxID=36751 RepID=U9SGU9_RHIID)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-5
Identity = 27/68 (39.71%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   61 ALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKM 264
            A+++ +VT ++LQ+E   LQ+E  K++E+   L  +  +LL RW+KK N +A+K+N AN+FY + L++
Sbjct:  163 AIREKEVTIQLLQDENATLQLEIGKIDERMKDLERENGQLLQRWLKKMNEEAEKMNEANQFYESALEV 230          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A642V8M3_9ASCO (ATG16 domain-containing protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V8M3_9ASCO)

HSP 1 Score: 51.2 bits (121), Expect = 1.310e-5
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    7 QLKLDLDRSQDHCTKYKNALKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEF 243
            +LK D + +++   KY+     L    +  ++EL  LQ++    EE + KL  D S L+DRWMKK   +A K+N ANEF
Sbjct:   88 ELKKDAETNKETLRKYEKQCNSLXXXAQNAKDELLALQIQLNISEENNRKLKEDNSALVDRWMKKVEGEASKMNEANEF 166          
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Match: A0A397GKH4_9GLOM (ATG16 domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GKH4_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 1.530e-5
Identity = 27/67 (40.30%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   64 LKDLQVTKRVLQEELQVLQVEYVKMEEQHTKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKM 264
            L++  +T ++LQ+EL  LQ+E  K++E+   L  +  +LL RW+KK N +A+K+N AN FY + L++
Sbjct:  179 LREKDITIQLLQDELSTLQLELGKIDERMKDLEKENGQLLQRWLKKMNEEAEKMNEANLFYESALEV 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114786.3070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
F4QA28_CAVFA1.930e-734.52Autophagy protein 16 n=1 Tax=Cavenderia fasciculat... [more]
A0A0D2X1H2_CAPO34.500e-735.23TipD n=1 Tax=Capsaspora owczarzaki (strain ATCC 30... [more]
F1A5I5_DICPU9.210e-732.98ATG16 domain-containing protein n=1 Tax=Dictyostel... [more]
A0A8H7PU92_MORIS1.230e-640.28ATG16 domain-containing protein n=1 Tax=Mortierell... [more]
D3B8K2_POLPP4.370e-632.98Autophagy protein 16 n=1 Tax=Polysphondylium palli... [more]
A0A1X2I5F6_9FUNG8.120e-633.72WD40-repeat-containing domain protein n=1 Tax=Absi... [more]
A0A015IA79_RHIIW9.120e-639.71ATG16 domain-containing protein n=1 Tax=Rhizophagu... [more]
U9SGU9_RHIID1.110e-539.71ATG16 domain-containing protein n=11 Tax=Glomerace... [more]
A0A642V8M3_9ASCO1.310e-537.97ATG16 domain-containing protein n=1 Tax=Trichomona... [more]
A0A397GKH4_9GLOM1.530e-540.30ATG16 domain-containing protein n=1 Tax=Diversispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114786contigM-pyrifera_M_contig114786:72..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog45351.EDO46075
Preferred nameATG16L1
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000421,GO:0001894,GO:0002065,GO:0002067,GO:0002165,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006996,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009894,GO:0009987,GO:0009991,GO:0010506,GO:0010623,GO:0012501,GO:0015980,GO:0016020,GO:0016032,GO:0016043,GO:0016052,GO:0016236,GO:0016740,GO:0018410,GO:0019058,GO:0019079,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0022607,GO:0030154,GO:0030855,GO:0031090,GO:0031323,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033554,GO:0034274,GO:0034497,GO:0034613,GO:0034645,GO:0035069,GO:0035096,GO:0035883,GO:0035973,GO:0036211,GO:0039689,GO:0039694,GO:0042157,GO:0042158,GO:0042592,GO:0042594,GO:0042742,GO:0042802,GO:0042995,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043687,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044437,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045595,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0050789,GO:0050793,GO:0050794,GO:0050830,GO:0050896,GO:0051020,GO:0051179,GO:0051259,GO:0051260,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060033,GO:0060249,GO:0060429,GO:0060786,GO:0061723,GO:0061739,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0097014,GO:0098542,GO:0098588,GO:0098792,GO:0098805,GO:0099568,GO:0120025,GO:0120038,GO:0140096,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905037,GO:1990234
EggNOG free text desc.selective autophagy
EggNOG OGs38G4W@33154,3B9XJ@33208,KOG0288@1,KOG0288@2759
COG Functional cat.F
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.5717225-CDS-M-pyrifera_M_contig114786:71..3711622815663.5717225-CDS-M-pyrifera_M_contig114786:71..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114786 72..371 +
1692277510.8942199-CDS-M-pyrifera_M_contig114786:71..3711692277510.8942199-CDS-M-pyrifera_M_contig114786:71..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114786 72..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114786.3070.1prot_M-pyrifera_M_contig114786.3070.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114786 72..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114786.3070.1

>prot_M-pyrifera_M_contig114786.3070.1 ID=prot_M-pyrifera_M_contig114786.3070.1|Name=mRNA_M-pyrifera_M_contig114786.3070.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
IVQLKLDLDRSQDHCTKYKNALKDLQVTKRVLQEELQVLQVEYVKMEEQH
TKLGVDYSELLDRWMKKANSDADKVNVANEFYNNMLKMQRNTELLQQAGG
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mRNA from alignment at M-pyrifera_M_contig114786:72..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114786.3070.1 ID=mRNA_M-pyrifera_M_contig114786.3070.1|Name=mRNA_M-pyrifera_M_contig114786.3070.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig114786:72..371+ (Macrocystis pyrifera P11B4 male)
ATTGTACAGTTGAAGTTGGACCTCGACCGCTCGCAGGACCACTGCACGAA GTACAAGAATGCCCTCAAGGACCTGCAGGTGACCAAGAGGGTGCTGCAGG AGGAGCTGCAGGTGCTGCAGGTAGAGTACGTCAAGATGGAGGAGCAGCAC ACGAAGCTCGGCGTCGACTACAGCGAACTGCTCGACCGCTGGATGAAGAA GGCCAACTCAGACGCAGACAAAGTGAACGTCGCCAACGAGTTCTACAACA ACATGCTCAAGATGCAGCGCAACACGGAGCTGCTGCAGCAGGCGGGCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114786:72..371+

>mRNA_M-pyrifera_M_contig114786.3070.1 ID=mRNA_M-pyrifera_M_contig114786.3070.1|Name=mRNA_M-pyrifera_M_contig114786.3070.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig114786:72..371+ (Macrocystis pyrifera P11B4 male)
ATTGTACAGTTGAAGTTGGACCTCGACCGCTCGCAGGACCACTGCACGAA
GTACAAGAATGCCCTCAAGGACCTGCAGGTGACCAAGAGGGTGCTGCAGG
AGGAGCTGCAGGTGCTGCAGGTAGAGTACGTCAAGATGGAGGAGCAGCAC
ACGAAGCTCGGCGTCGACTACAGCGAACTGCTCGACCGCTGGATGAAGAA
GGCCAACTCAGACGCAGACAAAGTGAACGTCGCCAACGAGTTCTACAACA
ACATGCTCAAGATGCAGCGCAACACGGAGCTGCTGCAGCAGGCGGGCGGC
ATTGTACAGTTGAAGTTGGACCTCGACCGCTCGCAGGACCACTGCACGAA
GTACAAGAATGCCCTCAAGGACCTGCAGGTGACCAAGAGGGTGCTGCAGG
AGGAGCTGCAGGTGCTGCAGGTAGAGTACGTCAAGATGGAGGAGCAGCAC
ACGAAGCTCGGCGTCGACTACAGCGAACTGCTCGACCGCTGGATGAAGAA
GGCCAACTCAGACGCAGACAAAGTGAACGTCGCCAACGAGTTCTACAACA
ACATGCTCAAGATGCAGCGCAACACGGAGCTGCTGCAGCAGGCGGGCGGC
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