mRNA_M-pyrifera_M_contig114021.2915.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114021.2915.1
Unique NamemRNA_M-pyrifera_M_contig114021.2915.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI001425BB0E (DNA repair protein RAD51 homolog 4-like isoform X1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425BB0E)

HSP 1 Score: 61.6 bits (148), Expect = 4.880e-9
Identity = 28/59 (47.46%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   94 SEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            S FY +++LV++DS+AAVIAP++GG+    GH +M QVAR LK+I +++++A L+ +R+
Sbjct:  193 SVFYAHLKLVIVDSIAAVIAPIIGGKQ-IEGHGLMMQVARKLKEIVVEENIAALVTNRV 250          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0014257A99 (DNA repair protein RAD51 homolog 4-like isoform X2 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257A99)

HSP 1 Score: 58.9 bits (141), Expect = 3.870e-8
Identity = 27/54 (50.00%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   94 SEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVL 255
            S FY +++LV++DS+AAVIAP++GG+    GH +M QVAR LK+I +++++A L
Sbjct:  193 SVFYAHLKLVIVDSIAAVIAPIIGGKQ-IEGHGLMMQVARKLKEIVVEENIAAL 245          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: A0A6P8HD86_ACTTE (DNA repair protein RAD51 homolog 4-like isoform X1 n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HD86_ACTTE)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-6
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRIHTCSLS 288
            FY N+RLV++DS+A VIAP+LGG+    GHS M  ++R LK +A++  ++V++ + + T +L+
Sbjct:  194 FYSNLRLVIVDSVAFVIAPILGGQQTQ-GHSFMVHLSRDLKSLALEHGLSVMVTNNVVTDALT 255          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0014589505 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589505)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            QT  FY N++L+V+D+LA+VI PVLGG+    GH +M  ++R LK +A+   +AVL+ + +
Sbjct:  190 QTDGFYSNMKLLVVDNLASVIYPVLGGQQ-MDGHGLMVTLSRKLKQLAVDCSIAVLITNNV 249          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F)

HSP 1 Score: 53.5 bits (127), Expect = 3.820e-6
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLL 258
            FY +++LVV+DS+ AV+APVLGG+    GH +M  +AR LK +A++  VAVLL
Sbjct:  196 FYASLKLVVVDSVTAVVAPVLGGQQTE-GHGMMIHLARSLKALAVEYSVAVLL 247          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI000B4574D0 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B4574D0)

HSP 1 Score: 53.1 bits (126), Expect = 5.170e-6
Identity = 25/61 (40.98%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            QT  FY N++L+++D++A+VI PVLGG+    GH +M  ++R LK +A++  +AVL+ + +
Sbjct:  190 QTDGFYSNLKLLIVDNVASVIYPVLGGQQ-MDGHGLMVTLSRKLKQLAVECSIAVLITNNL 249          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: A0A8B7Y1H2_ACAPL (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y1H2_ACAPL)

HSP 1 Score: 52.8 bits (125), Expect = 7.160e-6
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLL 258
            FYE+++L+ +DSL AV++P+LGG+    GH +M  +AR LK +A++  VA+LL
Sbjct:  196 FYESLKLITVDSLTAVVSPLLGGQQTE-GHGLMMHLARSLKALAVEYSVAILL 247          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0013905360 (DNA repair protein RAD51 homolog 4-like isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905360)

HSP 1 Score: 52.8 bits (125), Expect = 7.210e-6
Identity = 22/57 (38.60%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            FY+++RL+++DS+AA+I P+LGG+    GH++M  +AR LK +A+   +++L+ + +
Sbjct:  194 FYQDLRLIIVDSVAAIITPILGGQQ-ISGHTMMVHLARQLKSLAVDYALSILITNNV 249          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI00077A45D3 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A45D3)

HSP 1 Score: 50.8 bits (120), Expect = 1.850e-5
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  115 RLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            RLV++D LAAV++PVLGG+    GHS+M  ++R+LK +A++  +AV++ + +
Sbjct:   87 RLVIVDCLAAVVSPVLGGQQ-IHGHSLMVNLSRILKSLAVEHSLAVVITNNV 137          
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI001601197F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601197F)

HSP 1 Score: 51.2 bits (121), Expect = 2.530e-5
Identity = 24/61 (39.34%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
            QT  FY  ++L+++DS+AAV++P LGG+    GH+IM  ++R LK ++ +  +AVL+ + +
Sbjct:  190 QTDPFYSKLKLLIVDSVAAVLSPTLGGQQTE-GHAIMLNISRQLKVLSSEHSIAVLMTNNV 249          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI001425BB0E4.880e-947.46DNA repair protein RAD51 homolog 4-like isoform X1... [more]
UPI0014257A993.870e-850.00DNA repair protein RAD51 homolog 4-like isoform X2... [more]
A0A6P8HD86_ACTTE1.470e-642.86DNA repair protein RAD51 homolog 4-like isoform X1... [more]
UPI00145895052.010e-644.26DNA repair protein RAD51 homolog 4-like n=1 Tax=Pe... [more]
UPI0018D9AD9F3.820e-652.83DNA repair protein RAD51 homolog 4-like n=1 Tax=Pa... [more]
UPI000B4574D05.170e-640.98DNA repair protein RAD51 homolog 4-like n=1 Tax=Mi... [more]
A0A8B7Y1H2_ACAPL7.160e-647.17DNA repair protein RAD51 homolog 4-like n=1 Tax=Ac... [more]
UPI00139053607.210e-638.60DNA repair protein RAD51 homolog 4-like isoform X1... [more]
UPI00077A45D31.850e-544.23DNA repair protein RAD51 homolog 4-like n=1 Tax=Ac... [more]
UPI001601197F2.530e-539.34DNA repair protein RAD51 homolog 4-like n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114021contigM-pyrifera_M_contig114021:277..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.0682368-CDS-M-pyrifera_M_contig114021:276..5731622815655.0682368-CDS-M-pyrifera_M_contig114021:276..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114021 277..573 +
1692277507.0724046-CDS-M-pyrifera_M_contig114021:276..5731692277507.0724046-CDS-M-pyrifera_M_contig114021:276..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114021 277..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114021.2915.1prot_M-pyrifera_M_contig114021.2915.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114021 277..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114021.2915.1

>prot_M-pyrifera_M_contig114021.2915.1 ID=prot_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
HLPVFRLVTAATTLGLSSVTAADVTLTPLQTSEFYENVRLVVIDSLAAVI
APVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRIHTCSLSIAN
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mRNA from alignment at M-pyrifera_M_contig114021:277..573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114021.2915.1 ID=mRNA_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig114021:277..573+ (Macrocystis pyrifera P11B4 male)
CATCTTCCCGTCTTTCGACTTGTCACCGCTGCCACAACTCTGGGTCTCTC AAGTGTCACTGCAGCGGACGTAACACTGACACCGCTGCAGACGAGCGAAT TCTACGAGAACGTGCGGTTGGTTGTGATCGACTCCCTCGCTGCTGTGATT GCGCCGGTGCTGGGGGGACGGGACGGATTCGTGGGCCACAGCATCATGAC CCAGGTGGCGCGCCTGCTCAAGGACATTGCCATCCAGCAGGACGTCGCTG TGCTGCTGCGCTCTCGCATTCACACTTGCTCTCTCTCAATTGCTAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114021:277..573+

>mRNA_M-pyrifera_M_contig114021.2915.1 ID=mRNA_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig114021:277..573+ (Macrocystis pyrifera P11B4 male)
CATCTTCCCGTCTTTCGACTTGTCACCGCTGCCACAACTCTGGGTCTCTC
AAGTGTCACTGCAGCGGACGTAACACTGACACCGCTGCAGACGAGCGAAT
TCTACGAGAACGTGCGGTTGGTTGTGATCGACTCCCTCGCTGCTGTGATT
GCGCCGGTGCTGGGGGGACGGGACGGATTCGTGGGCCACAGCATCATGAC
CCAGGTGGCGCGCCTGCTCAAGGACATTGCCATCCAGCAGGACGTCGCTG
TGCTGCTGCGCTCTCGCATTCACACTTGCTCTCTCTCAATTGCTAACCAT
CTTCCCGTCTTTCGACTTGTCACCGCTGCCACAACTCTGGGTCTCTCAAG
TGTCACTGCAGCGGACGTAACACTGACACCGCTGCAGACGAGCGAATTCT
ACGAGAACGTGCGGTTGGTTGTGATCGACTCCCTCGCTGCTGTGATTGCG
CCGGTGCTGGGGGGACGGGACGGATTCGTGGGCCACAGCATCATGACCCA
GGTGGCGCGCCTGCTCAAGGACATTGCCATCCAGCAGGACGTCGCTGTGC
TGCTGCGCTCTCGCATTCACACTTGCTCTCTCTCAATTGCTAAC
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