mRNA_M-pyrifera_M_contig114021.2915.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI001425BB0E (DNA repair protein RAD51 homolog 4-like isoform X1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425BB0E) HSP 1 Score: 61.6 bits (148), Expect = 4.880e-9 Identity = 28/59 (47.46%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 94 SEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
S FY +++LV++DS+AAVIAP++GG+ GH +M QVAR LK+I +++++A L+ +R+
Sbjct: 193 SVFYAHLKLVIVDSIAAVIAPIIGGKQ-IEGHGLMMQVARKLKEIVVEENIAALVTNRV 250
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0014257A99 (DNA repair protein RAD51 homolog 4-like isoform X2 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257A99) HSP 1 Score: 58.9 bits (141), Expect = 3.870e-8 Identity = 27/54 (50.00%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 94 SEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVL 255
S FY +++LV++DS+AAVIAP++GG+ GH +M QVAR LK+I +++++A L
Sbjct: 193 SVFYAHLKLVIVDSIAAVIAPIIGGKQ-IEGHGLMMQVARKLKEIVVEENIAAL 245
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: A0A6P8HD86_ACTTE (DNA repair protein RAD51 homolog 4-like isoform X1 n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HD86_ACTTE) HSP 1 Score: 54.7 bits (130), Expect = 1.470e-6 Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRIHTCSLS 288
FY N+RLV++DS+A VIAP+LGG+ GHS M ++R LK +A++ ++V++ + + T +L+
Sbjct: 194 FYSNLRLVIVDSVAFVIAPILGGQQTQ-GHSFMVHLSRDLKSLALEHGLSVMVTNNVVTDALT 255
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0014589505 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589505) HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6 Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
QT FY N++L+V+D+LA+VI PVLGG+ GH +M ++R LK +A+ +AVL+ + +
Sbjct: 190 QTDGFYSNMKLLVVDNLASVIYPVLGGQQ-MDGHGLMVTLSRKLKQLAVDCSIAVLITNNV 249
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F) HSP 1 Score: 53.5 bits (127), Expect = 3.820e-6 Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLL 258
FY +++LVV+DS+ AV+APVLGG+ GH +M +AR LK +A++ VAVLL
Sbjct: 196 FYASLKLVVVDSVTAVVAPVLGGQQTE-GHGMMIHLARSLKALAVEYSVAVLL 247
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI000B4574D0 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B4574D0) HSP 1 Score: 53.1 bits (126), Expect = 5.170e-6 Identity = 25/61 (40.98%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
QT FY N++L+++D++A+VI PVLGG+ GH +M ++R LK +A++ +AVL+ + +
Sbjct: 190 QTDGFYSNLKLLIVDNVASVIYPVLGGQQ-MDGHGLMVTLSRKLKQLAVECSIAVLITNNL 249
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: A0A8B7Y1H2_ACAPL (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y1H2_ACAPL) HSP 1 Score: 52.8 bits (125), Expect = 7.160e-6 Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLL 258
FYE+++L+ +DSL AV++P+LGG+ GH +M +AR LK +A++ VA+LL
Sbjct: 196 FYESLKLITVDSLTAVVSPLLGGQQTE-GHGLMMHLARSLKALAVEYSVAILL 247
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI0013905360 (DNA repair protein RAD51 homolog 4-like isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905360) HSP 1 Score: 52.8 bits (125), Expect = 7.210e-6 Identity = 22/57 (38.60%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 100 FYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
FY+++RL+++DS+AA+I P+LGG+ GH++M +AR LK +A+ +++L+ + +
Sbjct: 194 FYQDLRLIIVDSVAAIITPILGGQQ-ISGHTMMVHLARQLKSLAVDYALSILITNNV 249
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI00077A45D3 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A45D3) HSP 1 Score: 50.8 bits (120), Expect = 1.850e-5 Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 115 RLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
RLV++D LAAV++PVLGG+ GHS+M ++R+LK +A++ +AV++ + +
Sbjct: 87 RLVIVDCLAAVVSPVLGGQQ-IHGHSLMVNLSRILKSLAVEHSLAVVITNNV 137
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Match: UPI001601197F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601197F) HSP 1 Score: 51.2 bits (121), Expect = 2.530e-5 Identity = 24/61 (39.34%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 88 QTSEFYENVRLVVIDSLAAVIAPVLGGRDGFVGHSIMTQVARLLKDIAIQQDVAVLLRSRI 270
QT FY ++L+++DS+AAV++P LGG+ GH+IM ++R LK ++ + +AVL+ + +
Sbjct: 190 QTDPFYSKLKLLIVDSVAAVLSPTLGGQQTE-GHAIMLNISRQLKVLSSEHSIAVLMTNNV 249 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114021.2915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig114021.2915.1 >prot_M-pyrifera_M_contig114021.2915.1 ID=prot_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp HLPVFRLVTAATTLGLSSVTAADVTLTPLQTSEFYENVRLVVIDSLAAVIback to top mRNA from alignment at M-pyrifera_M_contig114021:277..573+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig114021.2915.1 ID=mRNA_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig114021:277..573+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig114021:277..573+ >mRNA_M-pyrifera_M_contig114021.2915.1 ID=mRNA_M-pyrifera_M_contig114021.2915.1|Name=mRNA_M-pyrifera_M_contig114021.2915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig114021:277..573+ (Macrocystis pyrifera P11B4 male)back to top |