mRNA_M-pyrifera_M_contig113873.2878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113873.2878.1
Unique NamemRNA_M-pyrifera_M_contig113873.2878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A2E7KHS4_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHS4_9PLAN)

HSP 1 Score: 303 bits (775), Expect = 3.130e-93
Identity = 157/159 (98.74%), Postives = 157/159 (98.74%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQL APASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSE TAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ
Sbjct: 1062 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLPAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSEATAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 1220          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A518A842_9PLAN (Outer membrane biogenesis protein BamB n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A842_9PLAN)

HSP 1 Score: 259 bits (661), Expect = 2.710e-77
Identity = 131/159 (82.39%), Postives = 146/159 (91.82%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LSTIDLKQPVD DAG+SQTDIAVTDASGQLQVLDA+T QLKTKL L  PASNDLWIT NLLFVESRQ LTCYE+KDSL+QLWQLKLP  SL+G+PS +G+RL L+LQ+GSVLAVDP+TGQVQSET APLPSSGS+VTL+K+LLVP+VDGSLYRIDQ LQ
Sbjct: 1065 LSTIDLKQPVDFDAGVSQTDIAVTDASGQLQVLDARTSQLKTKLTLPTPASNDLWITGNLLFVESRQMLTCYEIKDSLKQLWQLKLPDSSLSGAPSSEGNRLLLALQSGSVLAVDPKTGQVQSETKAPLPSSGSIVTLDKILLVPTVDGSLYRIDQTLQ 1223          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A517RH37_9PLAN (Outer membrane biogenesis protein BamB n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RH37_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 6.400e-61
Identity = 104/159 (65.41%), Postives = 131/159 (82.39%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS  D KQP+D  A      +A+ DASGQLQ+LDAKT Q+K KLQL  PA+NDLWITD LLFVES+QTL+C++LK+ LQ++W+LKLPG SLAG+P+    RL LSLQNG++L+VDPQ+GQ+QS+  APLP+SGS+V LEKL++VP+VDGSLYRIDQ LQ
Sbjct: 1050 LSIADSKQPIDFKAAKGNNMLAIADASGQLQLLDAKTAQVKAKLQLPVPATNDLWITDELLFVESKQTLSCFDLKNELQKVWELKLPGASLAGAPTVIDKRLLLSLQNGALLSVDPQSGQIQSKANAPLPASGSIVNLEKLIIVPTVDGSLYRIDQVLQ 1208          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A518IE03_9PLAN (Outer membrane biogenesis protein BamB n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IE03_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 3.010e-55
Identity = 98/159 (61.64%), Postives = 124/159 (77.99%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS  DLKQP+D  A      +A+TDASGQLQ+LDAKT Q+K K QL  PA+NDLWI ++LLFVES+Q L+C+ +K+ LQ+ W LKLP  SLAG+PS    +L LSLQNG++L+VDPQ+GQ+ S+   PLP+SGS+V LEKL +VP+VDGSLYRIDQ LQ
Sbjct: 1064 LSIADLKQPIDFKAAKGTNLLAITDASGQLQLLDAKTTQVKAKHQLPTPATNDLWIMNDLLFVESKQNLSCFSMKEGLQKSWDLKLPDSSLAGAPSMIDKQLLLSLQNGTLLSVDPQSGQIHSKADVPLPASGSIVNLEKLFVVPTVDGSLYRIDQVLQ 1222          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A350KCW7_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KCW7_9PLAN)

HSP 1 Score: 174 bits (441), Expect = 6.800e-53
Identity = 90/159 (56.60%), Postives = 117/159 (73.58%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS ID KQP+D  AGI +  +AV+DASG LQ+LD K+ Q K KLQL  PA++DL + D  LFV+++Q L+C+ +   L+++W L LP  SLAG P+   ++L LSLQNG V +VD QTG+V +E  APLP+SGSVV LE  LLVP++DGSLYRIDQ LQ
Sbjct:    2 LSVIDQKQPIDFKAGIGKDTLAVSDASGLLQLLDLKSLQPKAKLQLDTPATSDLRLIDPFLFVQTKQNLSCFNINQGLEKIWNLDLPDASLAGPPAIIKNQLLLSLQNGKVQSVDLQTGKVSAELVAPLPASGSVVNLENFLLVPTMDGSLYRIDQALQ 160          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A517WZU6_9PLAN (Outer membrane biogenesis protein BamB n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZU6_9PLAN)

HSP 1 Score: 187 bits (476), Expect = 3.770e-52
Identity = 90/159 (56.60%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            +S  D KQP+D +AGIS   IA++DASGQLQ+LDAKTGQ K KLQL++PA+NDLWIT +LLFVES+Q L+C+++ + LQ+ W LKL   SL G PS    ++ L+L+NG+++ V+ +TG++Q+E   PLP+SG+ V L++++LVP+VDGSLYRIDQ LQ
Sbjct: 1060 VSMTDNKQPIDFNAGISNNFIAISDASGQLQLLDAKTGQPKEKLQLASPAANDLWITKDLLFVESKQNLSCFDISNGLQKRWDLKLSDSSLTGQPSMYADQILLTLRNGTLITVEAKTGKIQTEFNTPLPTSGATVNLDQIMLVPTVDGSLYRIDQVLQ 1218          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A2E2C2X1_9PLAN (FHA domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C2X1_9PLAN)

HSP 1 Score: 185 bits (469), Expect = 3.300e-51
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS+ D KQP+D  AG+ +  +AV DASG LQ+LD +TGQ + +LQL+APA++DLW+TD  LFV+S+Q L+C+ +   L+++W L LPG +LAG P+   ++L LSLQNG VL+VD Q+G+V +E  APLP+ G VV LE LLLVP+VDGSLYRIDQ LQ
Sbjct: 1059 LSSTDKKQPIDFKAGVGKKSVAVADASGLLQLLDLQTGQPQARLQLNAPATSDLWLTDPFLFVQSKQILSCFNIDQGLEKVWSLDLPGTALAGPPAVLNNQLLLSLQNGKVLSVDLQSGKVSAELVAPLPAIGPVVNLENLLLVPTVDGSLYRIDQALQ 1217          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A517VFQ6_9PLAN (Outer membrane biogenesis protein BamB n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFQ6_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 2.890e-50
Identity = 92/159 (57.86%), Postives = 116/159 (72.96%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS  D KQP+D  AG+ +  +AVTDASG LQ+LD KTG  K +LQL  PA++DLW+ D  LFV+S+Q L CY +K  L+++W L+LP  SLAG P    ++L LSLQNG V +VD QTG+V +E  APLP+ GSVV LE  LL+P+VDGSLYRIDQ LQ
Sbjct: 1058 LSVTDKKQPIDFKAGVGKDLLAVTDASGLLQLLDLKTGHPKARLQLDMPATSDLWLIDQFLFVQSKQNLICYNIKQGLEKIWNLELPNTSLAGPPVIIKNQLLLSLQNGKVQSVDLQTGKVSTELMAPLPAIGSVVNLENFLLIPTVDGSLYRIDQALQ 1216          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A6CAA8_9PLAN (FHA domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CAA8_9PLAN)

HSP 1 Score: 174 bits (442), Expect = 1.420e-47
Identity = 90/159 (56.60%), Postives = 119/159 (74.84%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            LS ID KQP+D  AGI +  +AV+DASG LQ+LD K+ Q K KLQL++PA++DL + D  LFV+++Q L+C+ +   L+++W L LP  SLAG P+   ++L LSLQNG V +VD QTG+V +E  APLP+SGSVV LE  LLVP++DGSLYRIDQ LQ
Sbjct: 1050 LSVIDKKQPIDFKAGIGKDTLAVSDASGLLQLLDLKSLQPKAKLQLASPATSDLRLIDPFLFVQTKQKLSCFNINQGLEKIWNLDLPDASLAGPPAIIKNQLLLSLQNGKVQSVDLQTGKVSAELVAPLPASGSVVNLENFLLVPTMDGSLYRIDQALQ 1208          
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Match: A0A517ZYI4_9PLAN (Outer membrane biogenesis protein BamB n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZYI4_9PLAN)

HSP 1 Score: 84.0 bits (206), Expect = 7.700e-16
Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = 1
Query:    1 LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPASNDLWITDNLLFVE-SRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGSRLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGSLYRIDQGLQ 477
            ++ I L   VDV   +S   + + DA   L VL+ ++ ++  K  L  PA    W+ ++ ++++  R+ L C++L D+L +LW++ LP  SLAG+P      L  +LQNG +L ++P TG+VQ               L   L+V S DG    +    Q
Sbjct: 1036 VTLIHLDHAVDVGMVVSGDRLLIADAEPSLSVLNGRSLEVVAKAALPQPAPLAPWMIEDRVYIQCGREQLICFQLGDTLNKLWEVPLPQTSLAGTPLMQDGELLAALQNGEILRINPDTGEVQHRYNVQQAIGDGPYLLGDQLVVISPDGGFIAVQTEKQ 1195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113873.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2E7KHS4_9PLAN3.130e-9398.74Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A842_9PLAN2.710e-7782.39Outer membrane biogenesis protein BamB n=3 Tax=Gim... [more]
A0A517RH37_9PLAN6.400e-6165.41Outer membrane biogenesis protein BamB n=2 Tax=Gim... [more]
A0A518IE03_9PLAN3.010e-5561.64Outer membrane biogenesis protein BamB n=1 Tax=Gim... [more]
A0A350KCW7_9PLAN6.800e-5356.60Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517WZU6_9PLAN3.770e-5256.60Outer membrane biogenesis protein BamB n=2 Tax=Gim... [more]
A0A2E2C2X1_9PLAN3.300e-5157.23FHA domain-containing protein n=4 Tax=Planctomycet... [more]
A0A517VFQ6_9PLAN2.890e-5057.86Outer membrane biogenesis protein BamB n=1 Tax=Gim... [more]
A6CAA8_9PLAN1.420e-4756.60FHA domain-containing protein n=6 Tax=Planctomycet... [more]
A0A517ZYI4_9PLAN7.700e-1630.63Outer membrane biogenesis protein BamB n=3 Tax=Sym... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113873contigM-pyrifera_M_contig113873:98..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score177.2
Seed ortholog evalue6.2e-42
Seed eggNOG ortholog344747.PM8797T_27065
KEGG koko:K06381
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PQQ-like domain
EggNOG OGs2IXDN@203682,COG1520@1,COG1520@2,COG4105@1,COG4105@2
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.0350084-CDS-M-pyrifera_M_contig113873:97..5741622815653.0350084-CDS-M-pyrifera_M_contig113873:97..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113873 98..574 +
1692277506.1983392-CDS-M-pyrifera_M_contig113873:97..5741692277506.1983392-CDS-M-pyrifera_M_contig113873:97..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113873 98..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113873.2878.1prot_M-pyrifera_M_contig113873.2878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113873 98..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113873.2878.1

>prot_M-pyrifera_M_contig113873.2878.1 ID=prot_M-pyrifera_M_contig113873.2878.1|Name=mRNA_M-pyrifera_M_contig113873.2878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
LSTIDLKQPVDVDAGISQTDIAVTDASGQLQVLDAKTGQLKTKLQLSAPA
SNDLWITDNLLFVESRQTLTCYELKDSLQQLWQLKLPGHSLAGSPSKDGS
RLFLSLQNGSVLAVDPQTGQVQSETTAPLPSSGSVVTLEKLLLVPSVDGS
LYRIDQGLQ
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mRNA from alignment at M-pyrifera_M_contig113873:98..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113873.2878.1 ID=mRNA_M-pyrifera_M_contig113873.2878.1|Name=mRNA_M-pyrifera_M_contig113873.2878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig113873:98..574+ (Macrocystis pyrifera P11B4 male)
CTCTCGACCATCGACCTGAAGCAACCAGTCGATGTGGACGCCGGTATCAG CCAGACTGACATCGCGGTTACAGATGCCTCAGGTCAACTGCAGGTGTTGG ATGCAAAAACGGGCCAGTTGAAAACCAAGCTGCAACTCTCTGCCCCTGCC TCCAATGACCTCTGGATTACAGACAACCTGCTGTTTGTTGAATCTCGACA GACGCTGACCTGCTACGAACTCAAAGACAGCCTGCAGCAGCTATGGCAAT TGAAACTGCCGGGCCACTCCCTGGCTGGTTCTCCATCGAAAGATGGCAGC CGCCTGTTCCTGTCACTGCAGAATGGCAGCGTCCTGGCAGTCGATCCCCA AACGGGCCAGGTCCAGTCCGAAACCACGGCACCGCTTCCCAGCAGTGGTT CCGTCGTCACCCTTGAGAAACTGTTACTGGTACCAAGCGTGGATGGCAGT CTGTATCGCATCGATCAGGGTCTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113873:98..574+

>mRNA_M-pyrifera_M_contig113873.2878.1 ID=mRNA_M-pyrifera_M_contig113873.2878.1|Name=mRNA_M-pyrifera_M_contig113873.2878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig113873:98..574+ (Macrocystis pyrifera P11B4 male)
CTCTCGACCATCGACCTGAAGCAACCAGTCGATGTGGACGCCGGTATCAG
CCAGACTGACATCGCGGTTACAGATGCCTCAGGTCAACTGCAGGTGTTGG
ATGCAAAAACGGGCCAGTTGAAAACCAAGCTGCAACTCTCTGCCCCTGCC
TCCAATGACCTCTGGATTACAGACAACCTGCTGTTTGTTGAATCTCGACA
GACGCTGACCTGCTACGAACTCAAAGACAGCCTGCAGCAGCTATGGCAAT
TGAAACTGCCGGGCCACTCCCTGGCTGGTTCTCCATCGAAAGATGGCAGC
CGCCTGTTCCTGTCACTGCAGAATGGCAGCGTCCTGGCAGTCGATCCCCA
AACGGGCCAGGTCCAGTCCGAAACCACGGCACCGCTTCCCAGCAGTGGTT
CCGTCGTCACCCTTGAGAAACTGTTACTGGTACCAAGCGTGGATGGCAGT
CTGTATCGCATCGATCAGGGTCTGCAGCTCTCGACCATCGACCTGAAGCA
ACCAGTCGATGTGGACGCCGGTATCAGCCAGACTGACATCGCGGTTACAG
ATGCCTCAGGTCAACTGCAGGTGTTGGATGCAAAAACGGGCCAGTTGAAA
ACCAAGCTGCAACTCTCTGCCCCTGCCTCCAATGACCTCTGGATTACAGA
CAACCTGCTGTTTGTTGAATCTCGACAGACGCTGACCTGCTACGAACTCA
AAGACAGCCTGCAGCAGCTATGGCAATTGAAACTGCCGGGCCACTCCCTG
GCTGGTTCTCCATCGAAAGATGGCAGCCGCCTGTTCCTGTCACTGCAGAA
TGGCAGCGTCCTGGCAGTCGATCCCCAAACGGGCCAGGTCCAGTCCGAAA
CCACGGCACCGCTTCCCAGCAGTGGTTCCGTCGTCACCCTTGAGAAACTG
TTACTGGTACCAAGCGTGGATGGCAGTCTGTATCGCATCGATCAGGGTCT
GCAG
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