mRNA_M-pyrifera_M_contig113679.2845.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A165TLE1_9APHY (RNB-domain-containing protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165TLE1_9APHY) HSP 1 Score: 70.1 bits (170), Expect = 3.060e-11 Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 1
Query: 1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAP-CQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTS 417
PAY ID VDAE LDDA+S+ + P P C W+H+H+ D + + P I R A + + S+ + P LS E RA L+F+ + D G +VDYK P ++ N R++ Y + + A+ S
Sbjct: 493 PAYIIDDVDAEELDDAISV-----------ERIPTEPDCAWLHVHIADPTSVLPPTHRIAREAFSRMQTRYYLDTSVPMLPDVPQLRHLSLGEGRAQLVLTFSGKI-DLEGNIVDYKIRPGIIRNARKLHYHDVSKAIGS 620
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: M5GG72_DACPD (RNB-domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GG72_DACPD) HSP 1 Score: 64.7 bits (156), Expect = 2.320e-9 Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1
Query: 1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASP--SLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSAKHP 429
P + ID VDA+ LDD +S+ + PG+ W+H+HV D +R + PD R AR E L E ++ + P + ++ T E +P +L+F+A V + G + D + ++ N+ R+TY + ++ L P
Sbjct: 503 PVFVIDQVDAQELDDGLSV-----------EVIPGSTDVWLHVHVADPTRLLHPDNVFSREARNRAETIYLVEQTIPMLPRSL--AMAGMTLEPGNPLCTLTFSARVSED-GDMTDLRVQAGVIRNVVRITYNQVDALLGYTPKP 633
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A3R7U074_9SYNE (RNB domain-containing ribonuclease n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A3R7U074_9SYNE) HSP 1 Score: 62.4 bits (150), Expect = 1.420e-8 Identity = 38/138 (27.54%), Postives = 63/138 (45.65%), Query Frame = 1
Query: 7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSA 420
Y +D + +DD +SL P W+ IH+ D +R IAPD+P+DR ARR + L + + P+ +LS + P+LS L+E G++ ++ S V R+ Y +A+ + A
Sbjct: 290 YTVDDITTREIDDGLSL-------------EPKPDGDWIWIHIADPARLIAPDSPLDREARRRATSLYLADGCQPMLPMQLAADVLSLRSGQRCPALSVGVLLEPE-GSIAQHRITRSWVQPRYRLNYEDADELIELA 413
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A8K0JN85_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JN85_9TREE) HSP 1 Score: 62.0 bits (149), Expect = 2.010e-8 Identity = 41/142 (28.87%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLK-EASMSIFPLATVRSLLSFTEERASPS----LSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
P Y ID DA+ LDD +SL + PG+ +W+H+H+ D +R++AP+ I A R G + + + P V S +S +R + L+F+A V + G ++DY+ +V N++ +TY + L
Sbjct: 512 PVYVIDSADAKELDDGISL-----------ERIPGSSDRWIHVHIADPTRWLAPEDDITSRAMRHGSTFYAAGDGARPMMPNELVMSAMSLGAKRDQRAPQVVLTFSAKVTGN-GELLDYQIRAGMVQNVKTITYSSVDDVL 641
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A2E6TI76_9BACT (Ribonuclease R n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E6TI76_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 4.870e-8 Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 13 IDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTE--ERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREAN 402
+DPVDA DDA+S + K G V +H+ D+S Y APDTP+D+ ARR G + L + + P + S E +R + S+ F DS G +V ++ +++ + +R+TY +A+
Sbjct: 200 VDPVDARDFDDALSFH-------SLKDGK-----VEVGVHIADVSAYFAPDTPLDKEARRRGNSTYLVGEVVPMLPTKLSNGICSLVEAEDRLAKSVLFTF---DSKGKLVGHRLAETVIHSDKRLTYEQAS 316
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: L8N221_9CYAN (Exoribonuclease II n=5 Tax=Pseudanabaena TaxID=1152 RepID=L8N221_9CYAN) HSP 1 Score: 60.5 bits (145), Expect = 6.670e-8 Identity = 41/138 (29.71%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 7 YAIDPVDAESLDDAVS---LGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
Y ID + +DD +S L D G + + IH+ D +R++ PD+P+D+ AR+ G + L + +FP+ +S E + +LSFA + D GAV Y+ SLV R+TY + L
Sbjct: 279 YTIDDISTTEIDDGLSIETLSDGG---------------KRIWIHIADPTRWLDPDSPLDKDARKRGTSVYLPTGVIPMFPIELAAGPMSLIENKVCHALSFAVDL-DRVGAVSHYEIVASLVKPNYRLTYEDVEEML 400
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: UPI001680A562 (ribonuclease R n=1 Tax=Pseudanabaena sp. FACHB-1998 TaxID=2692858 RepID=UPI001680A562) HSP 1 Score: 60.1 bits (144), Expect = 9.080e-8 Identity = 38/135 (28.15%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
Y ID + +DD +S+ T G+ + + IH+ D +R++ P++P+D+ AR+ G + L + +FP+ +S + + +LSFA +++ GAV Y+ PSLV R+TY + L
Sbjct: 279 YTIDDISTTEIDDGLSIE-------TLADGS-----KRIWIHIADPTRWLDPESPLDKDARKRGTSVYLPTGVIPMFPIELAAGPMSLIQSKVCYALSFAVDLDEG-GAVTYYEIVPSLVKPNYRLTYEDVEEML 400
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: S8F2V0_FOMPI (RNB domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8F2V0_FOMPI) HSP 1 Score: 60.1 bits (144), Expect = 9.420e-8 Identity = 40/144 (27.78%), Postives = 65/144 (45.14%), Query Frame = 1
Query: 1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQ-WVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSAKHP 429
PAY ID +DAE LDDA+S+ + P P W+H+H+ D + + P I R A E + S + P LS ++ ++F+ V D G +++YK P ++ + R++ Y N A+ P
Sbjct: 491 PAYVIDDIDAEELDDAISI-----------ESVPNEPDHAWLHVHIADPTSVLPPTHEIARQAFSRLETHYYLDRSYPLLPNVPQLRELSLGKDGPQVVMTFSGKV-DLEGNIIEYKIRPGIIRSARKLHYDSVNEAIGEPTAP 622
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A7Y5MBZ9_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5MBZ9_9CYAN) HSP 1 Score: 58.5 bits (140), Expect = 3.120e-7 Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 1
Query: 7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
Y ID + +DD +S+ + G WVHI D +R++ PD+ +D+ AR+ G + L + +FP+ +S E + +LSFA + D GAV DY+ SLV R+TY + L
Sbjct: 279 YTIDDISTTEIDDGLSI----------ETLADGRKRIWVHI--ADPTRWLDPDSALDKDARKRGTSIYLPTGVIPMFPMDLATGPMSLIESKVCYALSFAVDL-DEVGAVSDYEIVASLVKPNYRLTYEDVEEML 400
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: K0Z8B7_9ACTN (Ribonuclease R n=1 Tax=Slackia piriformis YIT 12062 TaxID=742818 RepID=K0Z8B7_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 5.770e-7 Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = 1
Query: 7 YAIDPVDAESLDDAVSL---GDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTS 417
+ IDP DA+ DDA+S+ GD ++ + +H+ D+S Y+ +P+D ARR + L + + + P + S R +++ +V D G V KAYPS++ + R+TY +A SAL++
Sbjct: 212 FTIDPDDAKDFDDALSIEPFGDGRLL---------------LGVHIADVSHYVPWGSPLDIEARRRATSVYLVDRVIPMLPEQLSNDVCSLRPGRLRRAMTV-DMVVDPLGNVSHMKAYPSVIRSAARLTYGQAQSALSA 335 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig113679.2845.1 >prot_M-pyrifera_M_contig113679.2845.1 ID=prot_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRback to top mRNA from alignment at M-pyrifera_M_contig113679:2..430- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig113679.2845.1 ID=mRNA_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig113679:2..430- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig113679:2..430- >mRNA_M-pyrifera_M_contig113679.2845.1 ID=mRNA_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig113679:2..430- (Macrocystis pyrifera P11B4 male)back to top |