mRNA_M-pyrifera_M_contig113679.2845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113679.2845.1
Unique NamemRNA_M-pyrifera_M_contig113679.2845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A165TLE1_9APHY (RNB-domain-containing protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165TLE1_9APHY)

HSP 1 Score: 70.1 bits (170), Expect = 3.060e-11
Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 1
Query:    1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAP-CQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTS 417
            PAY ID VDAE LDDA+S+           +  P  P C W+H+H+ D +  + P   I R A    +     + S+ + P       LS  E RA   L+F+  + D  G +VDYK  P ++ N R++ Y + + A+ S
Sbjct:  493 PAYIIDDVDAEELDDAISV-----------ERIPTEPDCAWLHVHIADPTSVLPPTHRIAREAFSRMQTRYYLDTSVPMLPDVPQLRHLSLGEGRAQLVLTFSGKI-DLEGNIVDYKIRPGIIRNARKLHYHDVSKAIGS 620          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: M5GG72_DACPD (RNB-domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GG72_DACPD)

HSP 1 Score: 64.7 bits (156), Expect = 2.320e-9
Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASP--SLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSAKHP 429
            P + ID VDA+ LDD +S+           +  PG+   W+H+HV D +R + PD    R AR   E   L E ++ + P +   ++   T E  +P  +L+F+A V +  G + D +    ++ N+ R+TY + ++ L     P
Sbjct:  503 PVFVIDQVDAQELDDGLSV-----------EVIPGSTDVWLHVHVADPTRLLHPDNVFSREARNRAETIYLVEQTIPMLPRSL--AMAGMTLEPGNPLCTLTFSARVSED-GDMTDLRVQAGVIRNVVRITYNQVDALLGYTPKP 633          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A3R7U074_9SYNE (RNB domain-containing ribonuclease n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A3R7U074_9SYNE)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-8
Identity = 38/138 (27.54%), Postives = 63/138 (45.65%), Query Frame = 1
Query:    7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSA 420
            Y +D +    +DD +SL              P     W+ IH+ D +R IAPD+P+DR ARR   +  L +    + P+     +LS    +  P+LS   L+E   G++  ++   S V    R+ Y +A+  +  A
Sbjct:  290 YTVDDITTREIDDGLSL-------------EPKPDGDWIWIHIADPARLIAPDSPLDREARRRATSLYLADGCQPMLPMQLAADVLSLRSGQRCPALSVGVLLEPE-GSIAQHRITRSWVQPRYRLNYEDADELIELA 413          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A8K0JN85_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JN85_9TREE)

HSP 1 Score: 62.0 bits (149), Expect = 2.010e-8
Identity = 41/142 (28.87%), Postives = 70/142 (49.30%), Query Frame = 1
Query:    1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLK-EASMSIFPLATVRSLLSFTEERASPS----LSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
            P Y ID  DA+ LDD +SL           +  PG+  +W+H+H+ D +R++AP+  I   A R G       + +  + P   V S +S   +R   +    L+F+A V  + G ++DY+    +V N++ +TY   +  L
Sbjct:  512 PVYVIDSADAKELDDGISL-----------ERIPGSSDRWIHVHIADPTRWLAPEDDITSRAMRHGSTFYAAGDGARPMMPNELVMSAMSLGAKRDQRAPQVVLTFSAKVTGN-GELLDYQIRAGMVQNVKTITYSSVDDVL 641          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A2E6TI76_9BACT (Ribonuclease R n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E6TI76_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.870e-8
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   13 IDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTE--ERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREAN 402
            +DPVDA   DDA+S         + K G        V +H+ D+S Y APDTP+D+ ARR G +  L    + + P      + S  E  +R + S+ F     DS G +V ++   +++ + +R+TY +A+
Sbjct:  200 VDPVDARDFDDALSFH-------SLKDGK-----VEVGVHIADVSAYFAPDTPLDKEARRRGNSTYLVGEVVPMLPTKLSNGICSLVEAEDRLAKSVLFTF---DSKGKLVGHRLAETVIHSDKRLTYEQAS 316          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: L8N221_9CYAN (Exoribonuclease II n=5 Tax=Pseudanabaena TaxID=1152 RepID=L8N221_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 6.670e-8
Identity = 41/138 (29.71%), Postives = 65/138 (47.10%), Query Frame = 1
Query:    7 YAIDPVDAESLDDAVS---LGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
            Y ID +    +DD +S   L D G               + + IH+ D +R++ PD+P+D+ AR+ G +  L    + +FP+      +S  E +   +LSFA  + D  GAV  Y+   SLV    R+TY +    L
Sbjct:  279 YTIDDISTTEIDDGLSIETLSDGG---------------KRIWIHIADPTRWLDPDSPLDKDARKRGTSVYLPTGVIPMFPIELAAGPMSLIENKVCHALSFAVDL-DRVGAVSHYEIVASLVKPNYRLTYEDVEEML 400          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: UPI001680A562 (ribonuclease R n=1 Tax=Pseudanabaena sp. FACHB-1998 TaxID=2692858 RepID=UPI001680A562)

HSP 1 Score: 60.1 bits (144), Expect = 9.080e-8
Identity = 38/135 (28.15%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
            Y ID +    +DD +S+        T   G+     + + IH+ D +R++ P++P+D+ AR+ G +  L    + +FP+      +S  + +   +LSFA  +++  GAV  Y+  PSLV    R+TY +    L
Sbjct:  279 YTIDDISTTEIDDGLSIE-------TLADGS-----KRIWIHIADPTRWLDPESPLDKDARKRGTSVYLPTGVIPMFPIELAAGPMSLIQSKVCYALSFAVDLDEG-GAVTYYEIVPSLVKPNYRLTYEDVEEML 400          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: S8F2V0_FOMPI (RNB domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8F2V0_FOMPI)

HSP 1 Score: 60.1 bits (144), Expect = 9.420e-8
Identity = 40/144 (27.78%), Postives = 65/144 (45.14%), Query Frame = 1
Query:    1 PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQ-WVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSAKHP 429
            PAY ID +DAE LDDA+S+           +  P  P   W+H+H+ D +  + P   I R A    E     + S  + P       LS  ++     ++F+  V D  G +++YK  P ++ + R++ Y   N A+     P
Sbjct:  491 PAYVIDDIDAEELDDAISI-----------ESVPNEPDHAWLHVHIADPTSVLPPTHEIARQAFSRLETHYYLDRSYPLLPNVPQLRELSLGKDGPQVVMTFSGKV-DLEGNIIEYKIRPGIIRSARKLHYDSVNEAIGEPTAP 622          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: A0A7Y5MBZ9_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5MBZ9_9CYAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.120e-7
Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 1
Query:    7 YAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSAL 411
            Y ID +    +DD +S+          +    G    WVHI   D +R++ PD+ +D+ AR+ G +  L    + +FP+      +S  E +   +LSFA  + D  GAV DY+   SLV    R+TY +    L
Sbjct:  279 YTIDDISTTEIDDGLSI----------ETLADGRKRIWVHI--ADPTRWLDPDSALDKDARKRGTSIYLPTGVIPMFPMDLATGPMSLIESKVCYALSFAVDL-DEVGAVSDYEIVASLVKPNYRLTYEDVEEML 400          
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Match: K0Z8B7_9ACTN (Ribonuclease R n=1 Tax=Slackia piriformis YIT 12062 TaxID=742818 RepID=K0Z8B7_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 5.770e-7
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = 1
Query:    7 YAIDPVDAESLDDAVSL---GDKGVVPPTSKKGTPGAPCQWVHIHVTDISRYIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLSFAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTS 417
            + IDP DA+  DDA+S+   GD  ++               + +H+ D+S Y+   +P+D  ARR   +  L +  + + P      + S    R   +++   +V D  G V   KAYPS++ +  R+TY +A SAL++
Sbjct:  212 FTIDPDDAKDFDDALSIEPFGDGRLL---------------LGVHIADVSHYVPWGSPLDIEARRRATSVYLVDRVIPMLPEQLSNDVCSLRPGRLRRAMTV-DMVVDPLGNVSHMKAYPSVIRSAARLTYGQAQSALSA 335          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113679.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A165TLE1_9APHY3.060e-1132.86RNB-domain-containing protein n=1 Tax=Daedalea que... [more]
M5GG72_DACPD2.320e-928.97RNB-domain-containing protein n=1 Tax=Dacryopinax ... [more]
A0A3R7U074_9SYNE1.420e-827.54RNB domain-containing ribonuclease n=2 Tax=unclass... [more]
A0A8K0JN85_9TREE2.010e-828.87Uncharacterized protein n=1 Tax=Filobasidium flori... [more]
A0A2E6TI76_9BACT4.870e-831.06Ribonuclease R n=1 Tax=Opitutae bacterium TaxID=20... [more]
L8N221_9CYAN6.670e-829.71Exoribonuclease II n=5 Tax=Pseudanabaena TaxID=115... [more]
UPI001680A5629.080e-828.15ribonuclease R n=1 Tax=Pseudanabaena sp. FACHB-199... [more]
S8F2V0_FOMPI9.420e-827.78RNB domain-containing protein n=1 Tax=Fomitopsis p... [more]
A0A7Y5MBZ9_9CYAN3.120e-730.37VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
K0Z8B7_9ACTN5.770e-728.57Ribonuclease R n=1 Tax=Slackia piriformis YIT 1206... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113679contigM-pyrifera_M_contig113679:2..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog83344.XP_007926737.1
Preferred nameMSU1
KEGG koko:K19782
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000177,GO:0000178,GO:0000932,GO:0000957,GO:0000959,GO:0000963,GO:0000965,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008859,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0022613,GO:0031123,GO:0031974,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045025,GO:0046483,GO:0046700,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354,GO:1990904
EggNOG free text desc.RNB
EggNOG OGs1ZXH0@147541,39XCE@33154,3MIQ2@451867,3NXKZ@4751,3QMPF@4890,COG0557@1,KOG2102@2759
EC3.1.13.1
COG Functional cat.J
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.2840776-CDS-M-pyrifera_M_contig113679:1..4301622815651.2840776-CDS-M-pyrifera_M_contig113679:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113679 2..430 -
1692277505.4413393-CDS-M-pyrifera_M_contig113679:1..4301692277505.4413393-CDS-M-pyrifera_M_contig113679:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113679 2..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113679.2845.1prot_M-pyrifera_M_contig113679.2845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113679 2..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113679.2845.1

>prot_M-pyrifera_M_contig113679.2845.1 ID=prot_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
PAYAIDPVDAESLDDAVSLGDKGVVPPTSKKGTPGAPCQWVHIHVTDISR
YIAPDTPIDRVARRLGENAVLKEASMSIFPLATVRSLLSFTEERASPSLS
FAALVEDSTGAVVDYKAYPSLVGNIRRMTYREANSALTSAKHP
back to top

mRNA from alignment at M-pyrifera_M_contig113679:2..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113679.2845.1 ID=mRNA_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig113679:2..430- (Macrocystis pyrifera P11B4 male)
CCGGCGTATGCCATCGATCCTGTCGACGCAGAGTCATTGGACGACGCTGT CAGCCTTGGTGATAAGGGAGTCGTGCCTCCCACCTCCAAGAAGGGTACCC CTGGCGCTCCTTGCCAGTGGGTTCACATTCATGTCACAGACATCTCTCGC TACATTGCGCCCGATACGCCCATTGATAGAGTGGCGAGAAGGCTGGGAGA GAATGCAGTGCTGAAAGAGGCATCGATGAGCATCTTCCCATTAGCAACAG TGAGGTCGCTTCTCTCCTTCACAGAGGAAAGAGCATCACCTTCACTCTCT TTCGCCGCTCTCGTGGAGGACTCGACAGGCGCTGTGGTGGACTACAAGGC CTACCCTTCTCTTGTGGGGAATATCCGGCGAATGACCTACCGTGAGGCTA ACTCTGCACTCACGTCTGCCAAGCACCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113679:2..430-

>mRNA_M-pyrifera_M_contig113679.2845.1 ID=mRNA_M-pyrifera_M_contig113679.2845.1|Name=mRNA_M-pyrifera_M_contig113679.2845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig113679:2..430- (Macrocystis pyrifera P11B4 male)
CCGGCGTATGCCATCGATCCTGTCGACGCAGAGTCATTGGACGACGCTGT
CAGCCTTGGTGATAAGGGAGTCGTGCCTCCCACCTCCAAGAAGGGTACCC
CTGGCGCTCCTTGCCAGTGGGTTCACATTCATGTCACAGACATCTCTCGC
TACATTGCGCCCGATACGCCCATTGATAGAGTGGCGAGAAGGCTGGGAGA
GAATGCAGTGCTGAAAGAGGCATCGATGAGCATCTTCCCATTAGCAACAG
TGAGGTCGCTTCTCTCCTTCACAGAGGAAAGAGCATCACCTTCACTCTCT
TTCGCCGCTCTCGTGGAGGACTCGACAGGCGCTGTGGTGGACTACAAGGC
CTACCCTTCTCTTGTGGGGAATATCCGGCGAATGACCTACCGTGAGGCTA
ACTCTGCACTCACGTCTGCCAAGCACCCACCGGCGTATGCCATCGATCCT
GTCGACGCAGAGTCATTGGACGACGCTGTCAGCCTTGGTGATAAGGGAGT
CGTGCCTCCCACCTCCAAGAAGGGTACCCCTGGCGCTCCTTGCCAGTGGG
TTCACATTCATGTCACAGACATCTCTCGCTACATTGCGCCCGATACGCCC
ATTGATAGAGTGGCGAGAAGGCTGGGAGAGAATGCAGTGCTGAAAGAGGC
ATCGATGAGCATCTTCCCATTAGCAACAGTGAGGTCGCTTCTCTCCTTCA
CAGAGGAAAGAGCATCACCTTCACTCTCTTTCGCCGCTCTCGTGGAGGAC
TCGACAGGCGCTGTGGTGGACTACAAGGCCTACCCTTCTCTTGTGGGGAA
TATCCGGCGAATGACCTACCGTGAGGCTAACTCTGCACTCACGTCTGCCA
AGCACCCA
back to top