mRNA_M-pyrifera_M_contig113210.2753.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113210.2753.1
Unique NamemRNA_M-pyrifera_M_contig113210.2753.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A2C9UJB7_MANES (JmjC domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UJB7_MANES)

HSP 1 Score: 143 bits (360), Expect = 4.670e-40
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQGKEQ--IYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDHLA---------ERDD-----YRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y EF E+ L +N+P ++  + D WRA  +W    G    Q  +  FG  +V VA CG +++ DQ+R EMTV EF+E  V+G     +YLKDWH V++   + AY  PL+  DDW+N + DH           E DD     YRFVY G KGS+TPLH DVF S+SW
Sbjct:   19 YNEFAERYLAKNQPVVLTGLMDDWRACRDWKTDNGYPNLQFFSTHFGKSKVQVADCGTREFTDQKRVEMTVSEFIEHWVEGSSNSLLYLKDWHFVKEYPEYVAYRTPLLFCDDWLNLYLDHYRMHKDPDTNQENDDITCSDYRFVYMGAKGSWTPLHADVFRSYSW 184          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A2C9UL80_MANES (JmjC domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UL80_MANES)

HSP 1 Score: 143 bits (360), Expect = 5.920e-39
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQGKEQ--IYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDHLA---------ERDD-----YRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y EF E+ L +N+P ++  + D WRA  +W    G    Q  +  FG  +V VA CG +++ DQ+R EMTV EF+E  V+G     +YLKDWH V++   + AY  PL+  DDW+N + DH           E DD     YRFVY G KGS+TPLH DVF S+SW
Sbjct:   19 YNEFAERYLAKNQPVVLTGLMDDWRACRDWKTDNGYPNLQFFSTHFGKSKVQVADCGTREFTDQKRVEMTVSEFIEHWVEGSSNSLLYLKDWHFVKEYPEYVAYRTPLLFCDDWLNLYLDHYRMHKDPDTNQENDDITCSDYRFVYMGAKGSWTPLHADVFRSYSW 184          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: D8S1Y8_SELML (JmjC domain-containing protein (Fragment) n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S1Y8_SELML)

HSP 1 Score: 140 bits (354), Expect = 3.440e-38
Identity = 69/163 (42.33%), Postives = 99/163 (60.74%), Query Frame = 1
Query:    1 AYEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVER----AVQGKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDH--------LAERDDYRFVYAGTKGSFTPLHCDVFHSFSW 453
            +Y+EF E+ LL N+P LV  + + WRA+ +W    G+   + LA++FG  ++ VA CGE+++ DQ+R EMTV EFV        + +  +YLKDWH V++   +GAY+ P+  SDDW+N   D              DYRFVY G  G++TPLH DVF S+SW
Sbjct:   16 SYQEFRERYLLPNKPVLVTGLMEHWRASRDWVDDHGKPDLEFLARNFGGSKIQVADCGEREFTDQKRLEMTVSEFVTHWKSDDPERRALLYLKDWHFVKEFPDYGAYETPIFFSDDWLNQFLDSNSWHSSGDTVPSSDYRFVYMGPAGTWTPLHADVFRSYSW 178          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: UPI000B5D53E1 (2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1 n=3 Tax=Manihot esculenta TaxID=3983 RepID=UPI000B5D53E1)

HSP 1 Score: 143 bits (360), Expect = 9.090e-38
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQGKEQ--IYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDHLA---------ERDD-----YRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y EF E+ L +N+P ++  + D WRA  +W    G    Q  +  FG  +V VA CG +++ DQ+R EMTV EF+E  V+G     +YLKDWH V++   + AY  PL+  DDW+N + DH           E DD     YRFVY G KGS+TPLH DVF S+SW
Sbjct:   19 YNEFAERYLAKNQPVVLTGLMDDWRACRDWKTDNGYPNLQFFSTHFGKSKVQVADCGTREFTDQKRVEMTVSEFIEHWVEGSSNSLLYLKDWHFVKEYPEYVAYRTPLLFCDDWLNLYLDHYRMHKDPDTNQENDDITCSDYRFVYMGAKGSWTPLHADVFRSYSW 184          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A6N2K5Q1_SALVM (JmjC domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K5Q1_SALVM)

HSP 1 Score: 137 bits (344), Expect = 1.270e-37
Identity = 70/180 (38.89%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 AYEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQ---------------GKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDH---------LAERD-----DYRFVYAGTKGSFTPLHCDVFHSFSW 453
            +Y EF E+ L +N+P ++  + D WRA  +W    G+   +  +  FG  +V VA CG +++ DQ+R EMTV EF++  +                GK  +YLKDWH V +   + AY  PL   DDW+N + DH           E D     DYRFVY G KGS+TPLH DVF S+SW
Sbjct:   18 SYNEFVERYLAKNQPVVLTGLMDGWRACKDWVFDNGKPNLKLFSTHFGNSKVQVADCGTKEFTDQKRVEMTVSEFIDHWIDDRECGGASNSFQEGNGKFVLYLKDWHFVTEYPEYVAYKTPLFFCDDWLNLYLDHHRMHNDSDTCQENDGISCSDYRFVYMGAKGSWTPLHADVFRSYSW 197          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: M1BJM2_SOLTU (Transcription factor n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BJM2_SOLTU)

HSP 1 Score: 138 bits (347), Expect = 7.840e-37
Identity = 71/169 (42.01%), Postives = 97/169 (57.40%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVER-----AVQGKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDHL---------AERD-----DYRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y EF EK + QN+P ++  + D WRA  +W  P G+      +  FG   V VA CG +++ DQ+R EMTV EFV+      A  G   +YLKDWH V++   + AY  P+  SDDW+N + D           +ER+     DYRFVY G+KG++TPLH DVF S+SW
Sbjct:   19 YSEFAEKYMSQNQPVVLTGLMDDWRACKDWVSPNGKPNLHYFSTHFGKSEVQVADCGTREFTDQKRIEMTVSEFVDHWLRDCAAGGGSLLYLKDWHFVKEYPEYIAYRTPMDFSDDWLNFYLDKFRMHNDPDTYSERNEISCSDYRFVYMGSKGTWTPLHADVFRSYSW 187          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A8J9YLZ0_BRALA (JMJD4 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YLZ0_BRALA)

HSP 1 Score: 139 bits (350), Expect = 1.080e-36
Identity = 69/160 (43.12%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLV-KNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVE--------RAVQGKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDHLAE-RDDYRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y+EF+ + L  NRP L   +V   WR++ EW    G+  W  L + FGT  VPVA C + +Y  Q +E+MT+ EF++            GK  +YLKDWH  +    +GAY+ P+    DW+N  WD      DDYRFVY G KGS+TPLH DVF S+SW
Sbjct:   40 YQEFYLRYLRPNRPCLFGSHVTSHWRSSREWVSKDGKPNWNTLKEMFGTLTVPVADCKKVEYQAQPKEDMTLAEFLDYWQDLCRSEHDPGKPCLYLKDWHFCRSVPDYGAYETPVYFQSDWLNEFWDQRYHGEDDYRFVYMGPKGSWTPLHADVFRSYSW 199          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A3Q7FS66_SOLLC (JmjC domain-containing protein n=12 Tax=Solanum TaxID=4107 RepID=A0A3Q7FS66_SOLLC)

HSP 1 Score: 140 bits (352), Expect = 1.120e-36
Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    4 YEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQ-----GKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWD--HL-------AERDD-----YRFVYAGTKGSFTPLHCDVFHSFSW 453
            Y EF EK + QN+P L+  + D WRA  +W  P G+      +  FG  +V VA CG +++ DQ+R EMTV EFV+R +      G   +YLKDWH V++   + AY  P+  SDDW+N + D  H+       +ER+D     YRFVY G+KG++TPLH DVF S+SW
Sbjct:   19 YSEFAEKYMSQNQPVLLTGLMDDWRACKDWVSPNGKPNLHFFSTHFGKSKVQVADCGTREFTDQKRIEMTVSEFVDRWLHDGGAGGGSLLYLKDWHFVKEYPEYIAYRTPMDFSDDWLNFYLDKFHMHNDPDTYSERNDITCSDYRFVYMGSKGTWTPLHADVFRSYSW 187          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A1U7VSV7_NICSY (jmjC domain-containing protein 4 isoform X2 n=2 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7VSV7_NICSY)

HSP 1 Score: 136 bits (343), Expect = 3.330e-36
Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query:    1 AYEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVER---------------AVQGKEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWD--HL-------AERD-----DYRFVYAGTKGSFTPLHCDVFHSFSW 453
            +Y EF EK + QN+P ++  + D WRA  +W  P G+     ++  FG  +V VA CG +++ DQ+R EMTV EFV+                   GK  +YLKDWH V++   + AY  P+  SDDW+N + D  H+       +ER+     DYRFVY G KG++TPLH DVF S+SW
Sbjct:   18 SYGEFVEKYMAQNQPVVLTGLMDDWRACKDWVSPNGKPNLHFISTHFGKSKVQVADCGTREFTDQKRIEMTVSEFVDHWLHLSSANNGGNCDCGAAGKPLLYLKDWHFVKEYPEYIAYRTPVDFSDDWLNLYLDKFHMHNDPDTYSERNEISCSDYRFVYMGAKGTWTPLHADVFRSYSW 197          
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Match: A0A067K4B1_JATCU (JmjC domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067K4B1_JATCU)

HSP 1 Score: 139 bits (349), Expect = 4.050e-36
Identity = 71/174 (40.80%), Postives = 99/174 (56.90%), Query Frame = 1
Query:    1 AYEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTCRVPVALCGEQQYNDQRREEMTVGEFVERAVQG---------KEQIYLKDWHLVQQEAHFGAYDVPLMVSDDWINAHWDH-------LAERD-------DYRFVYAGTKGSFTPLHCDVFHSFSW 453
            +Y EF E+ L +N+P ++  + D WRA  +W    G    Q  +  FG  +V VA CG +++ DQ+R EMTV EF++  V+G         K  +YLKDWH V++   + AY  P+  SDDW+N + DH       +  +D       DYRFVY G KGS+TPLH DVF S+SW
Sbjct:   18 SYNEFIERYLAKNQPVVLTGLMDDWRACEDWVTADGFPNLQFFSTLFGKSKVQVADCGTREFTDQKRVEMTVSEFIDNWVEGNASHDVDNEKSLLYLKDWHFVKEYPEYVAYRTPIYFSDDWLNLYLDHHCIHKDPVTYQDNNEICCSDYRFVYMGAKGSWTPLHADVFRSYSW 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113210.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9UJB7_MANES4.670e-4043.37JmjC domain-containing protein n=1 Tax=Manihot esc... [more]
A0A2C9UL80_MANES5.920e-3943.37JmjC domain-containing protein n=1 Tax=Manihot esc... [more]
D8S1Y8_SELML3.440e-3842.33JmjC domain-containing protein (Fragment) n=8 Tax=... [more]
UPI000B5D53E19.090e-3843.372-oxoglutarate and iron-dependent oxygenase JMJD4 ... [more]
A0A6N2K5Q1_SALVM1.270e-3738.89JmjC domain-containing protein n=1 Tax=Salix vimin... [more]
M1BJM2_SOLTU7.840e-3742.01Transcription factor n=1 Tax=Solanum tuberosum Tax... [more]
A0A8J9YLZ0_BRALA1.080e-3643.13JMJD4 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A3Q7FS66_SOLLC1.120e-3643.20JmjC domain-containing protein n=12 Tax=Solanum Ta... [more]
A0A1U7VSV7_NICSY3.330e-3640.00jmjC domain-containing protein 4 isoform X2 n=2 Ta... [more]
A0A067K4B1_JATCU4.050e-3640.80JmjC domain-containing protein n=2 Tax=Jatropha cu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113210contigM-pyrifera_M_contig113210:3..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score143.7
Seed ortholog evalue7.2e-32
Seed eggNOG ortholog88036.EFJ21537
Hectar predicted targeting categoryother localisation
EggNOG free text desc.JmjC domain-containing protein
EggNOG OGs37PYY@33090,3GF49@35493,KOG2131@1,KOG2131@2759
COG Functional cat.BT
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.9187753-CDS-M-pyrifera_M_contig113210:2..4551622815646.9187753-CDS-M-pyrifera_M_contig113210:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113210 3..455 -
1692277503.5892074-CDS-M-pyrifera_M_contig113210:2..4551692277503.5892074-CDS-M-pyrifera_M_contig113210:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113210 3..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113210.2753.1prot_M-pyrifera_M_contig113210.2753.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113210 3..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113210.2753.1

>prot_M-pyrifera_M_contig113210.2753.1 ID=prot_M-pyrifera_M_contig113210.2753.1|Name=mRNA_M-pyrifera_M_contig113210.2753.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
AYEEFFEKALLQNRPFLVKNVADSWRATAEWALPGGRVAWQRLAQDFGTC
RVPVALCGEQQYNDQRREEMTVGEFVERAVQGKEQIYLKDWHLVQQEAHF
GAYDVPLMVSDDWINAHWDHLAERDDYRFVYAGTKGSFTPLHCDVFHSFS
W
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mRNA from alignment at M-pyrifera_M_contig113210:3..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113210.2753.1 ID=mRNA_M-pyrifera_M_contig113210.2753.1|Name=mRNA_M-pyrifera_M_contig113210.2753.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig113210:3..455- (Macrocystis pyrifera P11B4 male)
GCATACGAAGAGTTCTTTGAGAAGGCTCTCCTGCAGAACAGGCCCTTCTT GGTGAAGAATGTGGCCGATTCCTGGAGGGCCACAGCGGAATGGGCGCTGC CTGGGGGCAGAGTGGCGTGGCAAAGGCTCGCGCAGGACTTTGGCACATGC CGTGTGCCGGTGGCTCTCTGTGGCGAACAACAGTACAATGATCAGAGACG AGAGGAGATGACGGTTGGGGAGTTCGTGGAGAGGGCGGTGCAAGGAAAGG AGCAGATCTACTTGAAAGACTGGCACCTAGTGCAGCAAGAGGCCCACTTT GGTGCATATGATGTGCCCCTCATGGTGTCAGATGACTGGATCAATGCTCA CTGGGACCACCTTGCAGAGAGGGACGACTACCGATTCGTCTATGCTGGGA CGAAGGGAAGCTTCACTCCTCTGCACTGCGACGTGTTTCATTCCTTCTCG TGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113210:3..455-

>mRNA_M-pyrifera_M_contig113210.2753.1 ID=mRNA_M-pyrifera_M_contig113210.2753.1|Name=mRNA_M-pyrifera_M_contig113210.2753.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig113210:3..455- (Macrocystis pyrifera P11B4 male)
GCATACGAAGAGTTCTTTGAGAAGGCTCTCCTGCAGAACAGGCCCTTCTT
GGTGAAGAATGTGGCCGATTCCTGGAGGGCCACAGCGGAATGGGCGCTGC
CTGGGGGCAGAGTGGCGTGGCAAAGGCTCGCGCAGGACTTTGGCACATGC
CGTGTGCCGGTGGCTCTCTGTGGCGAACAACAGTACAATGATCAGAGACG
AGAGGAGATGACGGTTGGGGAGTTCGTGGAGAGGGCGGTGCAAGGAAAGG
AGCAGATCTACTTGAAAGACTGGCACCTAGTGCAGCAAGAGGCCCACTTT
GGTGCATATGATGTGCCCCTCATGGTGTCAGATGACTGGATCAATGCTCA
CTGGGACCACCTTGCAGAGAGGGACGACTACCGATTCGTCTATGCTGGGA
CGAAGGGAAGCTTCACTCCTCTGCACTGCGACGTGTTTCATTCCTTCTCG
TGGGCATACGAAGAGTTCTTTGAGAAGGCTCTCCTGCAGAACAGGCCCTT
CTTGGTGAAGAATGTGGCCGATTCCTGGAGGGCCACAGCGGAATGGGCGC
TGCCTGGGGGCAGAGTGGCGTGGCAAAGGCTCGCGCAGGACTTTGGCACA
TGCCGTGTGCCGGTGGCTCTCTGTGGCGAACAACAGTACAATGATCAGAG
ACGAGAGGAGATGACGGTTGGGGAGTTCGTGGAGAGGGCGGTGCAAGGAA
AGGAGCAGATCTACTTGAAAGACTGGCACCTAGTGCAGCAAGAGGCCCAC
TTTGGTGCATATGATGTGCCCCTCATGGTGTCAGATGACTGGATCAATGC
TCACTGGGACCACCTTGCAGAGAGGGACGACTACCGATTCGTCTATGCTG
GGACGAAGGGAAGCTTCACTCCTCTGCACTGCGACGTGTTTCATTCCTTC
TCGTGG
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