mRNA_M-pyrifera_M_contig113090.2724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113090.2724.1
Unique NamemRNA_M-pyrifera_M_contig113090.2724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A401FTA9_9DELT (Uncharacterized protein n=1 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FTA9_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 2.330e-10
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    4 GYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDL------NLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTV 363
            G+TL+EVL A++ILA S   +L   S G ++ R++ E   A+ HA+  +A   +    S ++RTG  +D YRW   L      + E  E    A+     H L  + VT++W +  RE+ FE+ TV
Sbjct:    7 GFTLIEVLTAMMILAISLVTILQLFSGGLKSARLSDEYTRAIFHAKEKMAEILLADRLSETERTGEFEDGYRWSFRLVSLEPADEEFSEDGRPAATQSPVH-LFHITVTVFWDTGNRERHFEISTV 131          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A7W0FEF0_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7W0FEF0_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 8.980e-9
Identity = 35/122 (28.69%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            +G+TLLEV++A+ I+  S  +++   S G R+ RV+ +  +AV HA+  +    + P   A D     DD Y+W+ +++        +A  GD   +L+ + V + W + G+++  EL T++
Sbjct:    4 KGFTLLEVIIAIAIMGISVVMIMQLFSGGLRSGRVSRDYTMAVIHAKEKMEEMLISPAAGAGD----FDDNYKWQTEIS-----PYISAEKGDS--KLIKISVKVSWDAPGKDRSIELATLK 114          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A3A4S3M4_9DELT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4S3M4_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 1.470e-7
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLVVT-------IYWTSAGREQKFELRT 360
            +G+TL+EVLVA+++LA S  V++   S G ++++++ +    + HA   +    +    +  + +G  +D YRW   +     E+  +  AGDD   +  L V+       + W +  RE++FEL T
Sbjct:   43 KGFTLIEVLVAVMVLAISLVVIMQLFSGGLKSNKISNDYQYGIFHAREKMEELLLAQEWAPGETSGDFEDGYRWTATIEEIPDETDGSEDAGDDEELVKKLPVSTLLIRLNVIWNNGDREKRFELTT 169          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A842NET9_9DELT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A842NET9_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.490e-7
Identity = 34/121 (28.10%), Postives = 60/121 (49.59%), Query Frame = 1
Query:    4 GYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            G+TL+E+LVA+ ILA S  V+L   S G ++ R++ E    + HA   +    +    SA +  G   D +RW+  + L +    D          +  + V I W   G+E++F++ T++
Sbjct:   24 GFTLIEILVAISILAISLVVILQLFSGGLKSSRLSDEYTRGIFHAREKMGEVLLSKEVSAGETEGEFSDSFRWKCQIELIESVEEDEEKLP---FNMFNIKVDIVWDVGGKEKRFQVSTIK 141          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A2G6NFX9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2G6NFX9_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 4.640e-7
Identity = 36/125 (28.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLV---VTIYWTSAGREQKFELRTVR 366
            +G+TL+E LVA+++L  S  ++L   S G R+ + AA+   A+ HA++V+    +    + ++  G+ DD Y W L     + E  D A    +    V L+   V++ W +  RE+   L T++
Sbjct:    9 QGFTLMETLVAMMVLGISLVMVLQLFSGGLRSEKRAADTTRALMHAQAVMDRFLLAADYTTAETEGVFDDGYAWTLTYETYEPEIKDDADLLPEVTYPVDLILVAVSVRWAAGVREKTLALSTLK 133          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A2N2HKR6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 TaxID=2013746 RepID=A0A2N2HKR6_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 1.750e-6
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    4 GYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLA--MAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            G+TLLEVLVAL ++A + T++L   +A  R+  V+A+   A A A++ L   +A+V+P       T   DD YR  + +     E ++         R++ + +TI WT+ GRE+  EL++++
Sbjct:   23 GFTLLEVLVALAVMAIAGTLILQLFAANLRSISVSADVTAASARADARLRELLADVRPAERTWTET--TDDGYRMDVSMAETLAERTEGLPV-----RMMEVSLTIRWTAGGRERSLELKSMK 138          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A1W9MRW3_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9MRW3_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 2.330e-6
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHA-ESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLN-LEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            RG+TL+EVLVA++IL+ S TV+L   S G +A  ++     AV +A E + A+   + F S + + G  DD +RW+ D+  LE  E        D F    ++ V + W     E+ FE+ T++
Sbjct:   12 RGFTLIEVLVAMMILSISLTVILQLFSGGLKAAGMSENYTRAVFYAREQMEAILLAEEFESGTWK-GEFDDDFRWKSDIVWLEPSEEEKDRIPLDIF----SITVKVIWNEGPNEKSFEIGTLK 130          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A524KV68_9DELT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Syntrophobacterales bacterium TaxID=2282155 RepID=A0A524KV68_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 2.710e-6
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    4 GYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDL-NLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            G+TL+EVLVAL +LA    V+L   S G ++ +++ E    + HA+  +    +          G   D +RW+ D+  LE+RE   A    D F    T+ V + W   G E+ FE+ T++
Sbjct:   29 GFTLVEVLVALSLLAICLVVILQLFSGGLKSGKLSDEYTRGIFHAKEKMEEILLLDTVEEGVTEGEFGDDFRWKADIVRLEQREEETARLPFDTF----TIAVEVSWGVDGHEKHFEINTLK 146          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: A0A369C7D6_9GAMM (General secretion pathway protein I n=2 Tax=Thioalbus denitrificans TaxID=547122 RepID=A0A369C7D6_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 3.620e-6
Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDL-NLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            RG+TLLEVLVA VILA S  VLL   SAG R  R+AA+   AVA AES LA   V    +     G     +RWR ++  L+  +      A     RL  + V I W S    +   L T+R
Sbjct:   10 RGFTLLEVLVAFVILALSLGVLLGIFSAGLRNTRLAADYSAAVALAESRLAELGVTSPLAPGIEEGAGAGPFRWRSEVVELDPVDEPGGPGAA----RLYRVEVEIAWDSLLGPRTVSLATLR 128          
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Match: UPI000488CEEB (type II secretion system GspH family protein n=1 Tax=Desulforegula conservatrix TaxID=153026 RepID=UPI000488CEEB)

HSP 1 Score: 52.8 bits (125), Expect = 3.690e-6
Identity = 33/122 (27.05%), Postives = 62/122 (50.82%), Query Frame = 1
Query:    1 RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVLAMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVTLVVTIYWTSAGREQKFELRTVR 366
            +G+TL+E+LVA+++LA S T+++   S G R   +      A+ HA +++  A  +P      ++G IDD++RW   +              D   + + + V + WT  G  + +EL T++
Sbjct:   13 QGFTLMEILVAVMLLAISLTIIMQQFSGGIRNITLTDSYSKAINHARNLMEEALSEPKLLEGTQSGTIDDEFRWTRTMTF----IPPVKGKKDSVVKELEIAVRVEWTFLGMVRDYELVTIK 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113090.2724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401FTA9_9DELT2.330e-1034.13Uncharacterized protein n=1 Tax=Desulfonema ishimo... [more]
A0A7W0FEF0_9BACT8.980e-928.69Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A3A4S3M4_9DELT1.470e-727.56Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A842NET9_9DELT2.490e-728.10Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A2G6NFX9_9DELT4.640e-728.80Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2N2HKR6_9DELT1.750e-632.52Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1W9MRW3_9DELT2.330e-633.87Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A524KV68_9DELT2.710e-631.15Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A369C7D6_9GAMM3.620e-639.84General secretion pathway protein I n=2 Tax=Thioal... [more]
UPI000488CEEB3.690e-627.05type II secretion system GspH family protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113090contigM-pyrifera_M_contig113090:196..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog1442599.JAAN01000034_gene797
KEGG koko:K02458
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Prokaryotic N-terminal methylation motif
EggNOG OGs1QWTI@1224,1T5EA@1236,1XDCG@135614,COG4967@1,COG4967@2
COG Functional cat.NU
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.1636467-CDS-M-pyrifera_M_contig113090:195..5791622815645.1636467-CDS-M-pyrifera_M_contig113090:195..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113090 196..579 -
1692277502.712012-CDS-M-pyrifera_M_contig113090:195..5791692277502.712012-CDS-M-pyrifera_M_contig113090:195..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113090 196..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113090.2724.1prot_M-pyrifera_M_contig113090.2724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113090 196..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113090.2724.1

>prot_M-pyrifera_M_contig113090.2724.1 ID=prot_M-pyrifera_M_contig113090.2724.1|Name=mRNA_M-pyrifera_M_contig113090.2724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
RGYTLLEVLVALVILAASATVLLSAMSAGFRAHRVAAERLLAVAHAESVL
AMAEVQPFRSASDRTGIIDDKYRWRLDLNLEKRESSDAASAGDDFHRLVT
LVVTIYWTSAGREQKFELRTVRYLSLG*
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mRNA from alignment at M-pyrifera_M_contig113090:196..579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113090.2724.1 ID=mRNA_M-pyrifera_M_contig113090.2724.1|Name=mRNA_M-pyrifera_M_contig113090.2724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig113090:196..579- (Macrocystis pyrifera P11B4 male)
CGCGGTTATACGCTGCTGGAAGTCTTGGTAGCGCTGGTCATTCTCGCCGC CAGCGCGACCGTGCTACTTAGTGCCATGAGTGCAGGATTCAGGGCTCATC GAGTCGCGGCCGAACGATTACTGGCCGTTGCTCACGCTGAGTCCGTGTTG GCGATGGCAGAAGTTCAACCCTTTCGTTCGGCCAGTGACCGCACAGGCAT AATCGACGACAAGTACCGCTGGCGCCTCGATTTAAACCTGGAAAAGCGTG AGAGTTCCGACGCCGCTTCCGCGGGTGATGACTTTCATCGCTTGGTGACG CTTGTCGTCACAATCTACTGGACTTCTGCTGGTCGCGAGCAGAAGTTTGA GCTGCGCACCGTACGCTATCTGTCGCTGGGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113090:196..579-

>mRNA_M-pyrifera_M_contig113090.2724.1 ID=mRNA_M-pyrifera_M_contig113090.2724.1|Name=mRNA_M-pyrifera_M_contig113090.2724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig113090:196..579- (Macrocystis pyrifera P11B4 male)
CGCGGTTATACGCTGCTGGAAGTCTTGGTAGCGCTGGTCATTCTCGCCGC
CAGCGCGACCGTGCTACTTAGTGCCATGAGTGCAGGATTCAGGGCTCATC
GAGTCGCGGCCGAACGATTACTGGCCGTTGCTCACGCTGAGTCCGTGTTG
GCGATGGCAGAAGTTCAACCCTTTCGTTCGGCCAGTGACCGCACAGGCAT
AATCGACGACAAGTACCGCTGGCGCCTCGATTTAAACCTGGAAAAGCGTG
AGAGTTCCGACGCCGCTTCCGCGGGTGATGACTTTCATCGCTTGGTGACG
CTTGTCGTCACAATCTACTGGACTTCTGCTGGTCGCGAGCAGAAGTTTGA
GCTGCGCACCGTACGCTATCTGTCGCTGGGATAACGCGGTTATACGCTGC
TGGAAGTCTTGGTAGCGCTGGTCATTCTCGCCGCCAGCGCGACCGTGCTA
CTTAGTGCCATGAGTGCAGGATTCAGGGCTCATCGAGTCGCGGCCGAACG
ATTACTGGCCGTTGCTCACGCTGAGTCCGTGTTGGCGATGGCAGAAGTTC
AACCCTTTCGTTCGGCCAGTGACCGCACAGGCATAATCGACGACAAGTAC
CGCTGGCGCCTCGATTTAAACCTGGAAAAGCGTGAGAGTTCCGACGCCGC
TTCCGCGGGTGATGACTTTCATCGCTTGGTGACGCTTGTCGTCACAATCT
ACTGGACTTCTGCTGGTCGCGAGCAGAAGTTTGAGCTGCGCACCGTACGC
TATCTGTCGCTGGGATAA
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