mRNA_M-pyrifera_M_contig112743.2648.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112743.2648.1
Unique NamemRNA_M-pyrifera_M_contig112743.2648.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: A0A7S4HMI6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HMI6_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 2.070e-23
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLGTPYPANDITVTVTVTNDGRNFSNKLSFLYV 276
            G + GG E  +VGSPFIKGP+++ V +TPHG +E+ +SDG L+R+SE+V+FFTLP YP           I VTV VTNDGR+FS  L F+Y+
Sbjct:  336 GSVCGGGEYHIVGSPFIKGPALKCVISTPHGKMEMKYSDGTLERYSETVLFFTLPSYPHPDVVTMTEGKIDVTVEVTNDGRHFSAPLPFVYL 427          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: F1A0T9_DICPU (IPT/TIG domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0T9_DICPU)

HSP 1 Score: 88.6 bits (218), Expect = 1.850e-19
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLGTPYP-ANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S++ +F TPHG+V   +    ++ +SESV+FFTLPPYP   G   P   ++ V V +TNDGRNFSN LSF Y+
Sbjct:  152 GTTLGGDQMHVVGSPFIRCNSLKCIFHTPHGDVAASN----IELYSESVLFFTLPPYPIPPGFNSPEGTELPVQVVITNDGRNFSNPLSFTYI 240          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: Q75JY0_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q75JY0_DICDI)

HSP 1 Score: 90.1 bits (222), Expect = 4.650e-19
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLGTPYP-ANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S++ +F TPHG+V   +    ++ FSESV+FFTLPPYP   G   P   ++ V V +TNDGRNFSN LSF Y+
Sbjct:  734 GTTLGGDQMHVVGSPFIRCNSLKCIFHTPHGDVPASN----IELFSESVLFFTLPPYPIPQGFNSPEGTELPVQVVITNDGRNFSNPLSFTYI 822          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: L8H608_ACACA (IPT/TIG domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H608_ACACA)

HSP 1 Score: 86.3 bits (212), Expect = 1.020e-17
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYP-RSLGTPY---PANDITVTVTVTNDGRNFSNKLSFLYV 276
            G + GG +M V+G PFIKGPS+ ++F TPHG+V   + +     +S+SV+FF  PPYP  ++ +PY   P  ++ V V VTNDGR  SN L F Y+
Sbjct:  495 GSVHGGDKMHVIGQPFIKGPSLSIIFATPHGDVTALNPE----MYSDSVLFFEAPPYPCPAIFSPYNRDPVREVKVMVQVTNDGRTMSNPLEFTYI 586          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: F4Q9J0_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q9J0_CAVFA)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-17
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLG-TPYPANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S+R +F TPHG++   +    ++ FSESV+FFTLPPYP      P    ++ V V +TNDGRN+SN L F Y+
Sbjct:  553 GSTQGGDQMHVVGSPFIRCNSLRCIFHTPHGDIPANN----IELFSESVLFFTLPPYPAPANFCPPDGTELPVQVVITNDGRNYSNPLPFTYI 641          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: A0A151ZHG7_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHG7_9MYCE)

HSP 1 Score: 85.9 bits (211), Expect = 1.400e-17
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLGTPYP-ANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S+R +F TPHG++   +    ++ +SESV+FFTLPPYP       P   ++ V V +TNDGRN+SN L+F Y+
Sbjct:  511 GTSLGGDQMHVVGSPFIRCNSLRCIFHTPHGDIPATN----IELYSESVLFFTLPPYPTPPNFSAPEGTELPVQVVITNDGRNYSNPLAFTYI 599          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: UPI0006449DA0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449DA0)

HSP 1 Score: 85.5 bits (210), Expect = 1.840e-17
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLG-TPYPANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S+R +F TPHG++   +    ++ +SESV+FFTLPPYP     +P    ++ V V +TNDGRN+SN L F Y+
Sbjct:  421 GSTIGGEQMHVVGSPFIRCNSLRCIFHTPHGDIPANN----IELYSESVLFFTLPPYPSPPNFSPPDGTELPVQVVITNDGRNYSNPLPFTYI 509          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: A0A8J4Q3E4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3E4_9MYCE)

HSP 1 Score: 82.0 bits (201), Expect = 3.180e-16
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLGTPYP-ANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S++ +  TP G+V   +    ++ +SESV+FFTLPPYP       P   ++ V + VTNDGRN+SN LSF Y+
Sbjct:  601 GTTLGGEQMHVVGSPFIRCSSLKCIIHTPQGDVPASN----IELYSESVLFFTLPPYPIPANFSQPEGTELPVQIVVTNDGRNYSNPLSFTYI 689          
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Match: UPI000644D875 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D875)

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-16
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 GPMTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFFTLPPYPRSLG-TPYPANDITVTVTVTNDGRNFSNKLSFLYV 276
            G   GG +M VVGSPFI+  S+R +F T HG++   +    ++ FSESV+FFTLPPYP      P    ++ V V  TNDGRN+SN L F Y+
Sbjct:  424 GSSLGGDQMHVVGSPFIRCNSLRCIFHTAHGDIPANN----IELFSESVLFFTLPPYPAPPNFCPPDGTELAVQVVTTNDGRNYSNPLPFTYI 512          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112743.2648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S4HMI6_9EUKA2.070e-2353.26Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
F1A0T9_DICPU1.850e-1950.54IPT/TIG domain-containing protein n=1 Tax=Dictyost... [more]
Q75JY0_DICDI4.650e-1951.61Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
L8H608_ACACA1.020e-1745.83IPT/TIG domain containing protein n=1 Tax=Acantham... [more]
F4Q9J0_CAVFA1.030e-1748.39Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A151ZHG7_9MYCE1.400e-1747.31Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
UPI0006449DA01.840e-1747.31hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4Q3E4_9MYCE3.180e-1646.24Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644D8754.200e-1647.31hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112743contigM-pyrifera_M_contig112743:15..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue6.6e-17
Seed eggNOG ortholog44689.DDB0168793
Hectar predicted targeting categoryother localisation
EggNOG OGs292ZX@1,2R9WR@2759,3XGBF@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.9486797-UTR-M-pyrifera_M_contig112743:14..201622815640.9486797-UTR-M-pyrifera_M_contig112743:14..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112743 15..20 +
1692277500.7725255-UTR-M-pyrifera_M_contig112743:14..201692277500.7725255-UTR-M-pyrifera_M_contig112743:14..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112743 15..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.9608264-CDS-M-pyrifera_M_contig112743:20..2901622815640.9608264-CDS-M-pyrifera_M_contig112743:20..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112743 21..290 +
1692277500.7812674-CDS-M-pyrifera_M_contig112743:20..2901692277500.7812674-CDS-M-pyrifera_M_contig112743:20..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112743 21..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112743.2648.1prot_M-pyrifera_M_contig112743.2648.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112743 21..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112743.2648.1

>prot_M-pyrifera_M_contig112743.2648.1 ID=prot_M-pyrifera_M_contig112743.2648.1|Name=mRNA_M-pyrifera_M_contig112743.2648.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MTGGVEMCVVGSPFIKGPSMRVVFTTPHGNVELCHSDGALDRFSESVMFF
TLPPYPRSLGTPYPANDITVTVTVTNDGRNFSNKLSFLYV
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mRNA from alignment at M-pyrifera_M_contig112743:15..290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112743.2648.1 ID=mRNA_M-pyrifera_M_contig112743.2648.1|Name=mRNA_M-pyrifera_M_contig112743.2648.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig112743:15..290+ (Macrocystis pyrifera P11B4 male)
GGGCCCATGACGGGCGGCGTGGAGATGTGTGTGGTGGGCTCGCCCTTCAT CAAGGGCCCGTCGATGCGTGTGGTCTTCACCACCCCCCACGGCAACGTCG AACTCTGCCACTCAGACGGAGCACTGGACCGCTTCAGTGAGTCGGTGATG TTCTTCACCCTCCCCCCCTACCCCCGCTCTCTGGGCACTCCCTACCCAGC CAACGACATCACAGTCACTGTGACGGTGACGAACGATGGCAGGAACTTCA GCAACAAGCTGAGCTTCCTCTACGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112743:15..290+

>mRNA_M-pyrifera_M_contig112743.2648.1 ID=mRNA_M-pyrifera_M_contig112743.2648.1|Name=mRNA_M-pyrifera_M_contig112743.2648.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig112743:15..290+ (Macrocystis pyrifera P11B4 male)
ATGACGGGCGGCGTGGAGATGTGTGTGGTGGGCTCGCCCTTCATCAAGGG
CCCGTCGATGCGTGTGGTCTTCACCACCCCCCACGGCAACGTCGAACTCT
GCCACTCAGACGGAGCACTGGACCGCTTCAGTGAGTCGGTGATGTTCTTC
ACCCTCCCCCCCTACCCCCGCTCTCTGGGCACTCCCTACCCAGCCAACGA
CATCACAGTCACTGTGACGGTGACGAACGATGGCAGGAACTTCAGCAACA
AGCTGAGCTTCCTCTACGTCATGACGGGCGGCGTGGAGATGTGTGTGGTG
GGCTCGCCCTTCATCAAGGGCCCGTCGATGCGTGTGGTCTTCACCACCCC
CCACGGCAACGTCGAACTCTGCCACTCAGACGGAGCACTGGACCGCTTCA
GTGAGTCGGTGATGTTCTTCACCCTCCCCCCCTACCCCCGCTCTCTGGGC
ACTCCCTACCCAGCCAACGACATCACAGTCACTGTGACGGTGACGAACGA
TGGCAGGAACTTCAGCAACAAGCTGAGCTTCCTCTACGTC
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