mRNA_M-pyrifera_M_contig112440.2603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112440.2603.1
Unique NamemRNA_M-pyrifera_M_contig112440.2603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A7V8VAP8_9BACT (DiS_P_DiS domain-containing protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8VAP8_9BACT)

HSP 1 Score: 240 bits (613), Expect = 1.190e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELVLFQPHPMVAAGFLLFSVCPGAPYGPPFTAIAKVDTLVSVGLMVV 348
            ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELVLFQPHPMVAAGFLLFSVCPGAPYGPPFTAIAKVDTLVSVGLMVV
Sbjct:  176 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELVLFQPHPMVAAGFLLFSVCPGAPYGPPFTAIAKVDTLVSVGLMVV 291          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A2S8G2F4_9BACT (DiS_P_DiS domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8G2F4_9BACT)

HSP 1 Score: 129 bits (324), Expect = 2.230e-33
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            +LGATIGSFLNVVAYRLPR ES+VF+RS CPQC TQI GRDNVPIFGW+MLGGRCR CQ+ IS RYPIVEL+
Sbjct:   22 SLGATIGSFLNVVAYRLPRRESIVFKRSRCPQCGTQIKGRDNVPIFGWLMLGGRCRACQTPISPRYPIVELI 93          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A5C6BKJ5_9PLAN (Leader peptidase PppA n=2 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6BKJ5_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 4.060e-27
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    7 GATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            GATIGSFLNVVAYRLPR ESVVF+ SHCP+C  +I  RDNVPI GW+ LGGRCR CQS IS RYPIVE +
Sbjct:  209 GATIGSFLNVVAYRLPRRESVVFKSSHCPKCGVKIESRDNVPIIGWLRLGGRCRACQSLISMRYPIVESI 278          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A3B8ZH72_9PLAN (DiS_P_DiS domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8ZH72_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 6.020e-27
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 LGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELVLFQPHPMVAAG--FLLFSV 267
            LG TIGSFLNVVAYR+PRGESV+F+ S CP+C ++ILG+DN+PI GW+ L GRCR C + IS+RYPIVE         +AAG  FL F V
Sbjct:   12 LGGTIGSFLNVVAYRMPRGESVIFRPSRCPKCESRILGQDNIPIVGWLRLKGRCRVCHAPISSRYPIVE--------SIAAGIFFLFFLV 93          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A5B9Q8T3_9BACT (Leader peptidase PppA n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q8T3_9BACT)

HSP 1 Score: 107 bits (266), Expect = 1.300e-26
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    4 LGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELVL 219
            +GA IGSFLNVVAYRLPRG SVV+Q SHCP+C+  I  RDN+PI GW+ LGG+CR+C++ IS RY +VE V+
Sbjct:   18 IGACIGSFLNVVAYRLPRGMSVVWQPSHCPKCNHPIRARDNIPILGWLWLGGKCRDCKATISPRYAVVEGVM 89          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A6P0R2K7_9CYAN (Prepilin leader peptidase/N-methyltransferase n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0R2K7_9CYAN)

HSP 1 Score: 108 bits (269), Expect = 3.630e-26
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            ALGA+IGSFLNVV YR+P G S+++  SHCP+CH+++   +NVPIFGW+ LGGRC +C+S IS RYP+VEL+
Sbjct:    7 ALGASIGSFLNVVIYRIPAGLSILWPPSHCPKCHSRLKATENVPIFGWLWLGGRCGHCRSPISIRYPVVELI 78          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: UPI001A0C4E5F (Prepilin peptidase n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI001A0C4E5F)

HSP 1 Score: 108 bits (269), Expect = 4.200e-26
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    4 LGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVE 210
            LGA +GSFLNVV YRLP+G S+++  SHCPQCHT++   DNVPI GW+ LGGRCR+C++ ISARYP++E
Sbjct:   13 LGAALGSFLNVVIYRLPQGLSLLYPPSHCPQCHTRLKPYDNVPILGWLWLGGRCRHCKAPISARYPLIE 81          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A1F4U6M1_9BACT (Prepilin leader peptidase/N-methyltransferase n=1 Tax=candidate division WOR-1 bacterium RIFOXYC2_FULL_46_14 TaxID=1802587 RepID=A0A1F4U6M1_9BACT)

HSP 1 Score: 107 bits (267), Expect = 4.480e-26
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            ALGA +GSFLNV  YRLPR ESV+F  SHCP+C   IL  DN+P+  W++LGG+CR C+ KISARYP+VEL+
Sbjct:    9 ALGAMLGSFLNVCIYRLPREESVIFPASHCPKCGRNILPLDNIPVLSWLILGGKCRFCKEKISARYPLVELI 80          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: UPI00047CD3D6 (A24 family peptidase n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047CD3D6)

HSP 1 Score: 108 bits (270), Expect = 6.410e-26
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 ALGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            ALGA++GSF+NVV YRLP G S++F  SHCP C  Q+   DNVP+FGW+ L GRCR CQSKIS RYP++E+V
Sbjct:   15 ALGASVGSFINVVVYRLPAGLSIIFPPSHCPHCSNQLKPYDNVPVFGWLWLRGRCRYCQSKISLRYPMIEVV 86          
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Match: A0A517SKB8_9PLAN (Leader peptidase PppA n=2 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SKB8_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 6.570e-26
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 LGATIGSFLNVVAYRLPRGESVVFQRSHCPQCHTQILGRDNVPIFGWVMLGGRCRNCQSKISARYPIVELV 216
            LGATIGSFLNVVAYR+PRGESVV + S CP+C T I  RDN+P+ GW++L GRCR CQ  ISA+YPIVE +
Sbjct:  164 LGATIGSFLNVVAYRMPRGESVVLRSSRCPRCTTAIQPRDNIPVLGWLLLNGRCRACQVPISAQYPIVEFI 234          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112440.2603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8VAP8_9BACT1.190e-77100.00DiS_P_DiS domain-containing protein n=1 Tax=Bremer... [more]
A0A2S8G2F4_9BACT2.230e-3381.94DiS_P_DiS domain-containing protein n=1 Tax=Blasto... [more]
A0A5C6BKJ5_9PLAN4.060e-2775.71Leader peptidase PppA n=2 Tax=Symmachiella macrocy... [more]
A0A3B8ZH72_9PLAN6.020e-2761.11DiS_P_DiS domain-containing protein n=1 Tax=Planct... [more]
A0A5B9Q8T3_9BACT1.300e-2665.28Leader peptidase PppA n=1 Tax=Bythopirellula gokso... [more]
A0A6P0R2K7_9CYAN3.630e-2662.50Prepilin leader peptidase/N-methyltransferase n=2 ... [more]
UPI001A0C4E5F4.200e-2665.22Prepilin peptidase n=1 Tax=Leptolyngbyaceae cyanob... [more]
A0A1F4U6M1_9BACT4.480e-2663.89Prepilin leader peptidase/N-methyltransferase n=1 ... [more]
UPI00047CD3D66.410e-2663.89A24 family peptidase n=1 Tax=Fischerella sp. PCC 9... [more]
A0A517SKB8_9PLAN6.570e-2669.01Leader peptidase PppA n=2 Tax=Caulifigura coniform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112440contigM-pyrifera_M_contig112440:2..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112440.2603.1prot_M-pyrifera_M_contig112440.2603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112440 149..352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.5541995-UTR-M-pyrifera_M_contig112440:1..1481622815638.5541995-UTR-M-pyrifera_M_contig112440:1..148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112440 2..148 +
1692277499.6488597-UTR-M-pyrifera_M_contig112440:1..1481692277499.6488597-UTR-M-pyrifera_M_contig112440:1..148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112440 2..148 +
1622815638.5810602-UTR-M-pyrifera_M_contig112440:352..4181622815638.5810602-UTR-M-pyrifera_M_contig112440:352..418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112440 353..418 +
1692277499.6692014-UTR-M-pyrifera_M_contig112440:352..4181692277499.6692014-UTR-M-pyrifera_M_contig112440:352..418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112440 353..418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.5672574-CDS-M-pyrifera_M_contig112440:148..3521622815638.5672574-CDS-M-pyrifera_M_contig112440:148..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112440 149..352 +
1692277499.6592655-CDS-M-pyrifera_M_contig112440:148..3521692277499.6592655-CDS-M-pyrifera_M_contig112440:148..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112440 149..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112440.2603.1

>prot_M-pyrifera_M_contig112440.2603.1 ID=prot_M-pyrifera_M_contig112440.2603.1|Name=mRNA_M-pyrifera_M_contig112440.2603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MLGGRCRNCQSKISARYPIVELVLFQPHPMVAAGFLLFSVCPGAPYGPPF
TAIAKVDTLVSVGLMVV*
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mRNA from alignment at M-pyrifera_M_contig112440:2..418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112440.2603.1 ID=mRNA_M-pyrifera_M_contig112440.2603.1|Name=mRNA_M-pyrifera_M_contig112440.2603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig112440:2..418+ (Macrocystis pyrifera P11B4 male)
GCACTGGGCGCGACGATTGGCAGTTTTTTAAATGTCGTGGCATATCGACT GCCGCGTGGAGAGTCGGTCGTCTTTCAGCGTTCTCACTGCCCACAATGCC ACACGCAAATCCTTGGACGTGATAACGTACCGATCTTCGGATGGGTGATG CTGGGTGGGCGGTGCCGAAACTGCCAGTCGAAGATTTCGGCCCGTTACCC AATCGTCGAACTAGTACTCTTTCAGCCTCATCCAATGGTTGCAGCCGGTT TTCTTTTATTTTCCGTATGTCCTGGTGCCCCCTACGGACCACCATTTACG GCCATTGCCAAGGTAGACACACTTGTCTCGGTCGGCCTGATGGTCGTGTA AGCAATGTCTTCGGCAATTATACCACCGCTCCTTTTGAGCATTGGATTAC CGTTTCTCGCGGCCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112440:2..418+

>mRNA_M-pyrifera_M_contig112440.2603.1 ID=mRNA_M-pyrifera_M_contig112440.2603.1|Name=mRNA_M-pyrifera_M_contig112440.2603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig112440:2..418+ (Macrocystis pyrifera P11B4 male)
ATGCTGGGTGGGCGGTGCCGAAACTGCCAGTCGAAGATTTCGGCCCGTTA
CCCAATCGTCGAACTAGTACTCTTTCAGCCTCATCCAATGGTTGCAGCCG
GTTTTCTTTTATTTTCCGTATGTCCTGGTGCCCCCTACGGACCACCATTT
ACGGCCATTGCCAAGGTAGACACACTTGTCTCGGTCGGCCTGATGGTCGT
GTAAATGCTGGGTGGGCGGTGCCGAAACTGCCAGTCGAAGATTTCGGCCC
GTTACCCAATCGTCGAACTAGTACTCTTTCAGCCTCATCCAATGGTTGCA
GCCGGTTTTCTTTTATTTTCCGTATGTCCTGGTGCCCCCTACGGACCACC
ATTTACGGCCATTGCCAAGGTAGACACACTTGTCTCGGTCGGCCTGATGG
TCGTGTAA
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