mRNA_M-pyrifera_M_contig11242.2596.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11242.2596.1 vs. uniprot
Match: D8LHU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU0_ECTSI) HSP 1 Score: 356 bits (914), Expect = 2.530e-113 Identity = 185/273 (67.77%), Postives = 222/273 (81.32%), Query Frame = 1
Query: 1 SPTGTMKMGGRLLRRVMGMYRDDAVASNSMVLAEELSQRLFDADESLVDVRRGWDNLMWNLEIDDNDNDGEEAVALAMNGVLSALVEKLIQAGMEKPSAKTAELCARLGMGDEAMANAFSIVSGDIFESSLLGLLRGQARTFFRFFGTVADGTPTVLFRSEPLTQEELQGLKETAVKVGVSESAALEVVAKELKVSLTNIVTRAGKNMRSNTAKDGARIVGDANDLLAGLCTQVVEAFGGTDVTATLSIAGELASLDEYWASELCFKMVSCRR 819
SP GT+KM RLLRRVM MY++DAV+SN +VL+EELSQRLFDAD+SL D++ WDNLMWNLEIDD D + E+ + AM+GVL++LVEKLI+AGME+PSAKTA++CA LG+ DEAM AFS+VSGDIFE SLL ++R Q GT ADGT TVLFRS+PLT+EEL+ L TAV+VGVS ALEVVAKEL+VSL N+V RAG++MR+N AK+GA+I+GDAN LL GLCTQ+ AFG TD+T TLSIAG LASLDEYW SELCFKMV R
Sbjct: 625 SPAGTLKMSSRLLRRVMDMYKNDAVSSNILVLSEELSQRLFDADDSLPDIKLSWDNLMWNLEIDDGDYESEKQMKAAMDGVLASLVEKLIEAGMEQPSAKTAQMCATLGLDDEAMRKAFSLVSGDIFEQSLLKMMRSQ--------GTAADGTRTVLFRSDPLTKEELEELMATAVRVGVSGPMALEVVAKELQVSLKNMVVRAGQSMRNNVAKEGAKIIGDANILLDGLCTQLAGAFGATDITETLSIAGTLASLDEYWTSELCFKMVDAVR 889
BLAST of mRNA_M-pyrifera_M_contig11242.2596.1 vs. uniprot
Match: A0A835Z232_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z232_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 6.200e-12 Identity = 73/276 (26.45%), Postives = 120/276 (43.48%), Query Frame = 1
Query: 13 TMKMGGRLLRRVMGMYRDDAVASNSMVLAEELSQRLFDADESLVDVRRGWDNLMWNLEIDDNDNDGEEAVALAMNGVLSALVEKLIQAGMEKPSAKTAE-----LCARLGMGDEAMANAFSIVSGDIFESSLLGLLRGQARTFFRFFGTVADGTPTVLFRSEPLTQEELQGLKETAVKVGVSESAALEVVAKELKVSLTNIVTRAGKNMRSNTAKDGARIVGDANDLLAGLCTQVVEAFGGTDVTAT------LSIAGELASLDEYWASELCFKMV 807
T K LLRR++ M A AE+L L + E+ + +DD D+ E L M+ L+AL + Q K A + +C LG+ + + G F +L +LR Q + +R EPL++ EL + A + G+++ AAL+ A+EL+ L +++ MR A+ G R+V + +L+GL Q++ A GG A LS+ G+L + E+W SELC+ ++
Sbjct: 205 TAKFDALLLRRMLSMTGSLAKNLALRAYAEQLGAVLQRSAEAAASAAAKGEAGPIVQCLDDLDDALELPRDLRMDVRLAALEVYMQQYVGAKGEAYAPDEAGRWVCGFLGVPESKLEGVLQRERGKAFAQALEPVLRPQGK-----------------WRYEPLSEGELGEVTAAAERAGLTQEAALDGAARELRPLLQSLIQAGADLMRREQAEAGRRVVEQLDSVLSGLAAQLLGALGGDGARAEDVLMRRLSLKGDLTEVQEFWMSELCWALI 463 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11242.2596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11242.2596.1 >prot_M-pyrifera_M_contig11242.2596.1 ID=prot_M-pyrifera_M_contig11242.2596.1|Name=mRNA_M-pyrifera_M_contig11242.2596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp MKMGGRLLRRVMGMYRDDAVASNSMVLAEELSQRLFDADESLVDVRRGWDback to top mRNA from alignment at M-pyrifera_M_contig11242:217..9721- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11242.2596.1 ID=mRNA_M-pyrifera_M_contig11242.2596.1|Name=mRNA_M-pyrifera_M_contig11242.2596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9505bp|location=Sequence derived from alignment at M-pyrifera_M_contig11242:217..9721- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11242:217..9721- >mRNA_M-pyrifera_M_contig11242.2596.1 ID=mRNA_M-pyrifera_M_contig11242.2596.1|Name=mRNA_M-pyrifera_M_contig11242.2596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig11242:217..9721- (Macrocystis pyrifera P11B4 male)back to top |