mRNA_M-pyrifera_M_contig112417.2594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112417.2594.1
Unique NamemRNA_M-pyrifera_M_contig112417.2594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A024UJE0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJE0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.200e-26
Identity = 60/138 (43.48%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T  SW++TGS LAVS+GRFDH GWCN R  A+CLWN+F      SK +   + SSG       M V  HP +PA+VAAG+F G+++VWNTS  ++P++ T+ + +Y HRE               + + S+SGDG
Sbjct:  138 LECTGVSWNATGSVLAVSYGRFDHSGWCNYR-SALCLWNIFSADFNPSKPNVVLETSSG------LMCVAHHPTNPAVVAAGSFNGELMVWNTS-LEEPLVATSGIGDYFHREPISKLAWVFDTPSREYHIASVSGDG 267          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A6G0WJB3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJB3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.090e-25
Identity = 59/138 (42.75%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T  SW++TGS LAVS+GRFDH GWCN R  A+CLWN+F      SK S   + SSG       M V  HP +PA+VAAG+F G+++VWNT+  ++ ++ T+ + +Y HRE               + + S+SGDG
Sbjct:   58 LQCTGVSWNATGSVLAVSYGRFDHSGWCNYR-SALCLWNIFSSDFNASKPSMVLETSSG------LMCVAHHPTNPAMVAAGSFNGELLVWNTA-LEESLVATSGIGDYFHREPITKLAWVYDAQSREYHIASVSGDG 187          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A1W0AAK0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAK0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.330e-25
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFRRR---SKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T  SW++TGS +AVS+GRFDH GWCN R  A+CLWN+F      SK +   + SSG       M V  HP  PA+VAAGTF G+V+VWNTS  ++ ++ ++ + +Y HRE               + + S+SGDG
Sbjct:  138 LQCTGVSWNATGSVIAVSYGRFDHTGWCNYR-SALCLWNIFHHDFNPSKPNLVLETSSG------LMCVAHHPTMPAVVAAGTFNGEVIVWNTS-LEENLVASSGIGDYFHREPISKLSWVYDATSRDYNIASVSGDG 267          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A835ZBI6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.210e-25
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFRRRSKASSHADGSSGG--GASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXX--HLLTSISGDG 405
            L  T  SW+STGSTLA S+GR +  GWCN   GA+  WN F+R S A   A  +       SS  M +C HP HPAIVAAG+F G+V+VWNT+  DDP++G +Q+ +Y HRE                 + L S SGDG
Sbjct:   61 LQCTGVSWNSTGSTLAASYGRLNVAGWCN-EPGALACWNAFKRSSSADEAATLTPDVVFDHSSYLMCLCCHPTHPAIVAAGSFNGEVLVWNTA-ADDPLLGVSQIDDYFHREPVTQVAWVYDMDEQGEGYRLVSTSGDG 197          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: W4FF73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF73_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.210e-24
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T  SW++TGS LAV++GRFDH GWCN R   +CLWN+F      +K +   + SSG       M V  HP +PA+VAAG+F G+++VWNTS  ++P++ T+ + +Y HRE               + + S+SGDG
Sbjct:  140 LECTGVSWNATGSVLAVAYGRFDHSGWCNYR-SVLCLWNLFSADFNANKPTLVLETSSG------LMCVAHHPTNPAMVAAGSFNGELMVWNTS-LEEPLVATSGIGDYFHREPITKLAWVYDTPSREYHIASVSGDG 269          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A7S2UTZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTZ9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.670e-24
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFRRRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T   WS+TGS L  SFGR D  GWC+   G +C WN+F+RR    +  +       SSC M V  HP  PAI+AAG+F G+V+VW+T+  ++P+I +T++ +Y HRE               + ++S+SG+G
Sbjct:   20 LQCTGVGWSATGSVLVASFGRHDLCGWCDIP-GVLCAWNIFQRRGFDPAKPEFVYEH--SSCLMCVACHPTKPAIIAAGSFNGEVLVWDTA-AEEPLIASTKIDDYFHREPIVKVAWVYDLREEEYQVSSVSGEG 150          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A067CJD9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJD9_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 4.250e-24
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T+ SW++TGS LAV++GRFDH GWCN R  A+CLWN+F      +K S   + SSG       M V  HP  PA++AAG+F G+V+VWNTS  ++ ++ ++ + +Y HRE               + + S+SGDG
Sbjct:  139 LQCTAVSWNATGSVLAVAYGRFDHSGWCNYR-SALCLWNIFHPDFNVAKPSLVLETSSG------LMCVAHHPTMPAVIAAGSFNGEVLVWNTS-LEETLVASSGIGDYFHREPIAKVSWVYDPVARDYNIASVSGDG 268          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A6A4ZKX5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZKX5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.660e-24
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHRE 330
            L  T  SW++TGS LAV++GRFDH GWCN R   +CLWN+F      +K +   + SSG       M V  HP +PA+VAAG+F G+++VWNTS  ++P++ T+ + +Y HRE
Sbjct:  140 LECTGVSWNATGSVLAVAYGRFDHSGWCNYR-SVLCLWNLFSADFNANKPTLVLETSSG------LMCVAHHPTNPAVVAAGSFNGELMVWNTS-LEEPLVATSGIGDYFHRE 244          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: A0A2P4YCZ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCZ2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.010e-23
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFR---RRSKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHREXXXXXXXXXXXXXXXHLLTSISGDG 405
            L  T  SW++TGS +AV++GRFDH GWCN R  A+CLWNVF+      K S   + SSG       M V FHP++P+IVAAG+F G+V VW+    D   + ++ + +Y HRE               + + S+SGDG
Sbjct:  148 LSCTGVSWNATGSIIAVAYGRFDHSGWCNYR-SALCLWNVFQSDLNSQKPSLVLETSSG------LMCVAFHPQNPSIVAAGSFNGEVFVWDLEPVDYKFL-SSGIGDYFHREPVTKVAWVYDIQTADYNIASVSGDG 277          
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Match: UPI000A2A941C (LOW QUALITY PROTEIN: WD repeat-containing protein 34-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A941C)

HSP 1 Score: 103 bits (257), Expect = 2.340e-23
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFRRR---SKASSHADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGTTQVSEYGHRE 330
            L  T  SW+STGS +A S+GRFDH  WC   + ++C WN+ R+    +K  S  D       SSC MS+ FHP+ PA++A GTF G+V VW+ SK DD +IGT+ +    HRE
Sbjct:  122 LQVTGLSWNSTGSVIAASYGRFDHEDWCT-HKSSLCTWNIDRKTLKTNKPDSTID------LSSCLMSIAFHPKLPAVIAGGTFNGEVQVWDLSKEDDLLIGTSGLGNESHRE 227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112417.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024UJE0_9STRA5.200e-2643.48Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0WJB3_9STRA3.090e-2542.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0AAK0_9STRA3.330e-2542.75Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A835ZBI6_9STRA5.210e-2545.32WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
W4FF73_9STRA2.210e-2441.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2UTZ9_9STRA3.670e-2439.26Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067CJD9_SAPPC4.250e-2441.30Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6A4ZKX5_9STRA7.660e-2446.02Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2P4YCZ2_9STRA1.010e-2341.30Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
UPI000A2A941C2.340e-2346.02LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112417contigM-pyrifera_M_contig112417:2..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog112098.XP_008611708.1
Preferred nameWDR34
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0031503,GO:0032838,GO:0032991,GO:0035735,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045504,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.962699-CDS-M-pyrifera_M_contig112417:1..2261622815637.962699-CDS-M-pyrifera_M_contig112417:1..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112417 2..226 -
1692277499.3719668-CDS-M-pyrifera_M_contig112417:1..2261692277499.3719668-CDS-M-pyrifera_M_contig112417:1..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112417 2..226 -
1622815637.9754388-CDS-M-pyrifera_M_contig112417:377..5571622815637.9754388-CDS-M-pyrifera_M_contig112417:377..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112417 378..557 -
1692277499.3842766-CDS-M-pyrifera_M_contig112417:377..5571692277499.3842766-CDS-M-pyrifera_M_contig112417:377..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112417 378..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112417.2594.1prot_M-pyrifera_M_contig112417.2594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112417 2..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112417.2594.1

>prot_M-pyrifera_M_contig112417.2594.1 ID=prot_M-pyrifera_M_contig112417.2594.1|Name=mRNA_M-pyrifera_M_contig112417.2594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
LPATSSSWSSTGSTLAVSFGRFDHIGWCNCRRGAVCLWNVFRRRSKASSH
ADGSSGGGASSCTMSVCFHPEHPAIVAAGTFGGQVVVWNTSKTDDPVIGT
TQVSEYGHREPVVGVSWVYDYGRREHLLTSISGDG
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mRNA from alignment at M-pyrifera_M_contig112417:2..557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112417.2594.1 ID=mRNA_M-pyrifera_M_contig112417.2594.1|Name=mRNA_M-pyrifera_M_contig112417.2594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=556bp|location=Sequence derived from alignment at M-pyrifera_M_contig112417:2..557- (Macrocystis pyrifera P11B4 male)
CTCCCCGCCACCTCCTCCTCCTGGTCCTCCACTGGCTCTACCCTTGCTGT GTCGTTTGGGCGCTTTGACCACATTGGCTGGTGCAACTGCCGTCGCGGAG CGGTGTGCTTGTGGAACGTGTTTCGCCGGCGCAGCAAGGCTTCGTCGCAC GCAGACGGGTCTTCTGGTGGCGGTGCTTCCGTCTCGGCAGAGGAAGAGGG TGTTGGTGGGACAGTGGACAAGCAAGAGCCAGACATGGTGTTGGAGACGG AGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTCCGCTGCG CGTTCTCACGCATCCACACACACTGTCCCAGTCGTGCACAATGAGCGTGT GCTTCCACCCAGAGCACCCAGCGATCGTTGCTGCGGGGACGTTCGGCGGG CAGGTGGTGGTGTGGAACACTTCGAAAACAGACGATCCGGTGATCGGGAC CACGCAAGTGAGCGAGTACGGGCACAGAGAGCCGGTGGTGGGGGTGTCGT GGGTGTACGACTACGGGCGCAGGGAGCACTTGCTGACGAGCATCAGCGGG GACGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112417:2..557-

>mRNA_M-pyrifera_M_contig112417.2594.1 ID=mRNA_M-pyrifera_M_contig112417.2594.1|Name=mRNA_M-pyrifera_M_contig112417.2594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig112417:2..557- (Macrocystis pyrifera P11B4 male)
CTCCCCGCCACCTCCTCCTCCTGGTCCTCCACTGGCTCTACCCTTGCTGT
GTCGTTTGGGCGCTTTGACCACATTGGCTGGTGCAACTGCCGTCGCGGAG
CGGTGTGCTTGTGGAACGTGTTTCGCCGGCGCAGCAAGGCTTCGTCGCAC
GCAGACGGGTCTTCTGGTGGCGGTGCTTCCCTCCCCGCCACCTCCTCCTC
CTGGTCCTCCACTGGCTCTACCCTTGCTGTGTCGTTTGGGCGCTTTGACC
ACATTGGCTGGTGCAACTGCCGTCGCGGAGCGGTGTGCTTGTGGAACGTG
TTTCGCCGGCGCAGCAAGGCTTCGTCGCACGCAGACGGGTCTTCTGGTGG
CGGTGCTTCCTCGTGCACAATGAGCGTGTGCTTCCACCCAGAGCACCCAG
CGATCGTTGCTGCGGGGACGTTCGGCGGGCAGGTGGTGGTGTGGAACACT
TCGAAAACAGACGATCCGGTGATCGGGACCACGCAAGTGAGCGAGTACGG
GCACAGAGAGCCGGTGGTGGGGGTGTCGTGGGTGTACGACTACGGGCGCA
GGGAGCACTTGCTGACGAGCATCAGCGGGGACGGGTCGTGCACAATGAGC
GTGTGCTTCCACCCAGAGCACCCAGCGATCGTTGCTGCGGGGACGTTCGG
CGGGCAGGTGGTGGTGTGGAACACTTCGAAAACAGACGATCCGGTGATCG
GGACCACGCAAGTGAGCGAGTACGGGCACAGAGAGCCGGTGGTGGGGGTG
TCGTGGGTGTACGACTACGGGCGCAGGGAGCACTTGCTGACGAGCATCAG
CGGGGACGGG
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