mRNA_M-pyrifera_M_contig112311.2581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112311.2581.1
Unique NamemRNA_M-pyrifera_M_contig112311.2581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A1J5GSI2_9BACT (Uncharacterized protein n=4 Tax=unclassified Atribacterota TaxID=1047049 RepID=A0A1J5GSI2_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.560e-9
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIVP----EYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIECVEASEGLSVSLE 468
            P+++ S  E D G++K  +    I  ++N G E L +S+++A C C     SS  + PG +A        + Y    VK  + + +NDP  P + IT+ AE+ P    +  +  ++ DLG +  G+     FT+   G+  L I  ++ SE +   +E
Sbjct:   35 PKISFSEEEWDFGKIKEDERPVHIFTIKNIGREELIISRVRASCGCTATMLSSDHILPGKSAELKATFNPTGY-KGLVKKDINIESNDPQIPNKKITIIAEVEPTPSPQAFLSNSQWDLGLISQGDLPTFAFTIENKGELDLVINKIDISEYVQYDVE 191          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A7X9IMY3_9BACT (DUF1573 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X9IMY3_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-7
Identity = 44/149 (29.53%), Postives = 68/149 (45.64%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLY----TNDPDQPERDITVRAEI----VPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIE 429
            PRV     E D G++K  + +      +N GT  LKVS++   C C     S   + PG      +     ++ S    G+V  Y    +NDP QP+ ++T++AE+      +  ++   LDLG    GE A+    VR  G   L+IE
Sbjct:   32 PRVVFKELERDFGRIKQGETVSYEFIFKNEGTAPLKVSRVATSCGCAAALVSQKEIAPGKEGRLKV-----SFDSRGYSGQVVKYIYFDSNDPKQPQVELTIKAEVETGPAAKLELDRYNLDLGISLEGEEASAKLLVRNTGQLELRIE 175          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A350D5X9_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A350D5X9_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.420e-7
Identity = 44/149 (29.53%), Postives = 68/149 (45.64%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLY----TNDPDQPERDITVRAEI----VPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIE 429
            PRV     E D G++K  + +      +N GT  LKVS++   C C     S   + PG      +     ++ S    G+V  Y    +NDP QP+ ++T++AE+      +  ++   LDLG    GE A+    VR  G   L+IE
Sbjct:  110 PRVVFKELERDFGRIKQGETVSYEFIFKNEGTAPLKVSRVATSCGCAAALVSQKEIAPGKEGRLKV-----SFDSRGYSGQVVKYIYFDSNDPKQPQVELTIKAEVETGPAAKLELDRYNLDLGITLEGEEASAKLLVRNTGQLELRIE 253          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A3N0ZMT4_9BACT (DUF1573 domain-containing protein n=1 Tax=Bacteroidetes/Chlorobi group bacterium MS-B_bin-24 TaxID=2382228 RepID=A0A3N0ZMT4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-6
Identity = 39/153 (25.49%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   37 DLGQVKPV-DGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIVPEYVIEPAE-LDLGTLKAGESAAQTFTVRQNGDQALQIECVEAS-EGLSVSLEALRPKK 486
            D G VKP  D +   ++++N G E LK++++K  C C         + PG  A+ ++ + ++ +  N VK  +R+ +NDP  P + + ++A I     I P        +  G+ +    T++ N  + + +  ++ + + LSV+L    PKK
Sbjct:   33 DWGTVKPTQDPLNTKIKLKNVGNEVLKITEVKPGCGCTTAPLDKNELNPGEEATLSVTLRIAGFSGNVVKS-IRIASNDPQNPNKYLYLKANIFHPISISPTSYFAFNEMTVGKESTAKVTIKNNTQEPITLSDIQVTPDNLSVNL----PKK 180          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A3N7GSV8_9FLAO (DUF1573 domain-containing protein n=1 Tax=Chryseobacterium sp. TaxID=1871047 RepID=A0A3N7GSV8_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 2.950e-6
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   13 VALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPD 276
            +A   T ID G+V P    +RI+ V+NTGT+ L +S IKA C C     S+  +KPG +A   I+V   T    D +  + +++NDP+
Sbjct:   22 IAFDRTVIDYGKVMPGSDGQRILTVKNTGTQPLIISDIKASCGCTTPQWSTDPIKPGGSAQ--IKVGYDTNIRGDFRKLIEVFSNDPE 107          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A1W9LDK0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium A1 TaxID=1934251 RepID=A0A1W9LDK0_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 5.480e-6
Identity = 47/194 (24.23%), Postives = 81/194 (41.75%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIVPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIECVEASEG-LSVSLEALRPKKEEGQEQPKRYAVVVTLEPGAPMGVFRGKVAVST 585
            P++       + G++     +E    ++N GT TL++ Q++A C C   +TS   V PG T   + ++ L        K  + + +NDP QP   + +    + E  I P +L  G + +G        +      A+ I   EA+   L+V+ E             K + + VT +P    G  RG V + T
Sbjct:   30 PKLVCDEPTFNFGEMDNSKDVEHTFLLKNEGTLTLEIGQVRASCGCTVASTSQKTVPPGQTTEVSARLSLRGRQGPQHK-TITVQSNDPQQPNFMLALEGSAISEMQIRPNQLFFGRIASGTIVTGLVELAIESTNAVNILKSEANTPQLAVTTEI--------SADGKLHRIWVTTQPPLSKGTLRGNVHIET 214          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A316MTA5_9BACT (Uncharacterized protein n=2 Tax=Bacteroidales TaxID=171549 RepID=A0A316MTA5_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-5
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIV 315
            P+VALSTT IDLGQ       E  V V N G + L + +I +    VE + +   VK G+ A   ++V      S+ +  ++ L TNDPD+P  +I V  E++
Sbjct:  255 PKVALSTTAIDLGQTAVGTRNEAEVIVENFGKDPLIIRRISSFDPAVEASINKTEVKGGSQAKIKVKVDTRKCESDILNARISLITNDPDRPVSNIRVVGELL 357          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A2S8GEH1_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GEH1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.500e-5
Identity = 48/175 (27.43%), Postives = 77/175 (44.00%), Query Frame = 1
Query:   85 VRNTGTETLKVSQIKALCTCVEVATSS---LVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIVPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIECV----EASEGLSVSLEALRPKK-EEGQEQPKRYAVVVTLEPGAPMGVFRGKVAVST 585
            V+N G E L+++     C C          L V PG T    ++     Y   D      + TNDP +P  ++ +   +V   V+EP+E+ L  + AGE+      V    D   +I  +    + SE  SVS   L P++ +E       Y V + ++PG P+G  R  + V+T
Sbjct:   79 VKNDGKEELELTMEGTTCKCTMADLKEGDVLRVAPGETTEIKLEWRPKAY-QEDFAQTATIATNDPRKPTLELRITGSVVQAVVLEPSEIRLTNMAAGETRKAATKVLSFKDPDFKINDLKVTGDGSELFSVSSRPLEPEELKETSGALAGYLVQLEVKPGLPLGTNRNNIEVAT 252          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A4Y9IYS1_9BACT (DUF1573 domain-containing protein n=1 Tax=Barnesiella sp. WM24 TaxID=2558278 RepID=A0A4Y9IYS1_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.620e-5
Identity = 32/103 (31.07%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    7 PRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITVRAEIV 315
            P++ALS+T IDLGQV      E  + + N G + L + ++ +L   V+ + +   VK G+ A   ++V       + V  ++ + TNDPD+P  +I V  E++
Sbjct:  256 PKIALSSTSIDLGQVAVGTRNEEEIIIENFGKDPLVIRKVASLDPAVQASVNKTEVKGGSNARIKVKVDTRKVEGDIVNARITVITNDPDRPVSNIRVVGELL 358          
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Match: A0A367ZIG6_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A367ZIG6_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.770e-5
Identity = 40/150 (26.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   31 EIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVEVATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVR----LYTNDPDQPERDITVRAEIVPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIECVEAS-EGLSVSL 465
            + D G +     +E+IV ++N+G +TL +S ++A C C     S  V+ P  TA+  I      + S    GKV     + +ND   P+  I+  A IV     +P  +    LK    A+   +V+ N  + ++I+ ++    GL+V +
Sbjct:   30 DFDFGDIFAGSKVEKIVTIKNSGKDTLIISNVRASCGCTATLLSDKVLPPKKTATLNIG-----FDSRGFNGKVHKTVTISSNDNANPDLQISFTANIVSLLTFDPPYIYFQQLKPDSVASLRISVKNNTQETIEIKSIQNKITGLTVDI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112311.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A1J5GSI2_9BACT3.560e-927.85Uncharacterized protein n=4 Tax=unclassified Atrib... [more]
A0A7X9IMY3_9BACT1.320e-729.53DUF1573 domain-containing protein n=1 Tax=Acidobac... [more]
A0A350D5X9_9BACT1.420e-729.53Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A3N0ZMT4_9BACT1.300e-625.49DUF1573 domain-containing protein n=1 Tax=Bacteroi... [more]
A0A3N7GSV8_9FLAO2.950e-637.50DUF1573 domain-containing protein n=1 Tax=Chryseob... [more]
A0A1W9LDK0_9BACT5.480e-624.23Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A316MTA5_9BACT1.050e-535.92Uncharacterized protein n=2 Tax=Bacteroidales TaxI... [more]
A0A2S8GEH1_9BACT1.500e-527.43Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
A0A4Y9IYS1_9BACT2.620e-531.07DUF1573 domain-containing protein n=1 Tax=Barnesie... [more]
A0A367ZIG6_9BACT2.770e-526.67Uncharacterized protein n=1 Tax=Ignavibacteriae ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112311contigM-pyrifera_M_contig112311:2..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue9e-11
Seed eggNOG ortholog237368.SCABRO_01224
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1573)
EggNOG OGs2DBYC@1,2IZ15@203682,2ZBUF@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.1950922-CDS-M-pyrifera_M_contig112311:1..5861622815637.1950922-CDS-M-pyrifera_M_contig112311:1..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112311 2..586 +
1692277498.9742174-CDS-M-pyrifera_M_contig112311:1..5861692277498.9742174-CDS-M-pyrifera_M_contig112311:1..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112311 2..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112311.2581.1prot_M-pyrifera_M_contig112311.2581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112311 2..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112311.2581.1

>prot_M-pyrifera_M_contig112311.2581.1 ID=prot_M-pyrifera_M_contig112311.2581.1|Name=mRNA_M-pyrifera_M_contig112311.2581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
EGPRVALSTTEIDLGQVKPVDGIERIVEVRNTGTETLKVSQIKALCTCVE
VATSSLVVKPGATASFAIQVMLSTYPSNDVKGKVRLYTNDPDQPERDITV
RAEIVPEYVIEPAELDLGTLKAGESAAQTFTVRQNGDQALQIECVEASEG
LSVSLEALRPKKEEGQEQPKRYAVVVTLEPGAPMGVFRGKVAVST
back to top

mRNA from alignment at M-pyrifera_M_contig112311:2..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112311.2581.1 ID=mRNA_M-pyrifera_M_contig112311.2581.1|Name=mRNA_M-pyrifera_M_contig112311.2581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig112311:2..586+ (Macrocystis pyrifera P11B4 male)
GAGGGGCCCAGGGTGGCGCTTTCCACCACGGAGATTGATCTGGGGCAGGT GAAGCCTGTGGACGGTATCGAGCGGATCGTAGAGGTGCGAAACACGGGTA CGGAAACACTCAAGGTTTCCCAGATAAAGGCGCTGTGCACCTGTGTAGAG GTGGCTACGTCATCTTTGGTGGTGAAGCCGGGTGCGACGGCTTCTTTTGC CATACAAGTCATGTTGTCCACCTATCCATCCAATGACGTGAAGGGCAAGG TGCGGCTCTATACGAATGATCCCGATCAACCGGAACGCGACATTACGGTG CGGGCGGAGATTGTACCGGAGTATGTGATCGAGCCCGCTGAGTTGGACTT GGGTACCCTCAAGGCCGGGGAGTCGGCCGCGCAAACTTTCACCGTACGGC AGAACGGTGATCAGGCGTTGCAGATAGAGTGCGTGGAAGCTTCGGAGGGC CTATCTGTGAGCTTGGAAGCGCTTCGCCCAAAGAAAGAGGAGGGGCAGGA GCAGCCTAAGCGATATGCGGTAGTTGTCACCTTGGAACCTGGTGCCCCCA TGGGCGTGTTCAGGGGGAAAGTAGCGGTCTCCACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112311:2..586+

>mRNA_M-pyrifera_M_contig112311.2581.1 ID=mRNA_M-pyrifera_M_contig112311.2581.1|Name=mRNA_M-pyrifera_M_contig112311.2581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig112311:2..586+ (Macrocystis pyrifera P11B4 male)
GAGGGGCCCAGGGTGGCGCTTTCCACCACGGAGATTGATCTGGGGCAGGT
GAAGCCTGTGGACGGTATCGAGCGGATCGTAGAGGTGCGAAACACGGGTA
CGGAAACACTCAAGGTTTCCCAGATAAAGGCGCTGTGCACCTGTGTAGAG
GTGGCTACGTCATCTTTGGTGGTGAAGCCGGGTGCGACGGCTTCTTTTGC
CATACAAGTCATGTTGTCCACCTATCCATCCAATGACGTGAAGGGCAAGG
TGCGGCTCTATACGAATGATCCCGATCAACCGGAACGCGACATTACGGTG
CGGGCGGAGATTGTACCGGAGTATGTGATCGAGCCCGCTGAGTTGGACTT
GGGTACCCTCAAGGCCGGGGAGTCGGCCGCGCAAACTTTCACCGTACGGC
AGAACGGTGATCAGGCGTTGCAGATAGAGTGCGTGGAAGCTTCGGAGGGC
CTATCTGTGAGCTTGGAAGCGCTTCGCCCAAAGAAAGAGGAGGGGCAGGA
GCAGCCTAAGCGATATGCGGTAGTTGTCACCTTGGAACCTGGTGCCCCCA
TGGGCGTGTTCAGGGGGAAAGTAGCGGTCTCCACCGAGGGGCCCAGGGTG
GCGCTTTCCACCACGGAGATTGATCTGGGGCAGGTGAAGCCTGTGGACGG
TATCGAGCGGATCGTAGAGGTGCGAAACACGGGTACGGAAACACTCAAGG
TTTCCCAGATAAAGGCGCTGTGCACCTGTGTAGAGGTGGCTACGTCATCT
TTGGTGGTGAAGCCGGGTGCGACGGCTTCTTTTGCCATACAAGTCATGTT
GTCCACCTATCCATCCAATGACGTGAAGGGCAAGGTGCGGCTCTATACGA
ATGATCCCGATCAACCGGAACGCGACATTACGGTGCGGGCGGAGATTGTA
CCGGAGTATGTGATCGAGCCCGCTGAGTTGGACTTGGGTACCCTCAAGGC
CGGGGAGTCGGCCGCGCAAACTTTCACCGTACGGCAGAACGGTGATCAGG
CGTTGCAGATAGAGTGCGTGGAAGCTTCGGAGGGCCTATCTGTGAGCTTG
GAAGCGCTTCGCCCAAAGAAAGAGGAGGGGCAGGAGCAGCCTAAGCGATA
TGCGGTAGTTGTCACCTTGGAACCTGGTGCCCCCATGGGCGTGTTCAGGG
GGAAAGTAGCGGTCTCCACC
back to top