mRNA_M-pyrifera_M_contig112293.2574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112293.2574.1
Unique NamemRNA_M-pyrifera_M_contig112293.2574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A523K4N5_9GAMM (ABC-F family ATPase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K4N5_9GAMM)

HSP 1 Score: 339 bits (869), Expect = 3.360e-112
Identity = 166/194 (85.57%), Postives = 182/194 (93.81%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            Y VLDTVIMGHE+LW + QER+RLY L E++D EG+RVADLE EFAE+DGY+AESRAGELLEGIGI+V+QH+GPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDI T+RWLED+L  S+STMVIISHDRHFLNSVCTHMADLDYGKL VFPGNYDEYMTAATQARERMY +NAKKKAKMA+LQAFVSRF
Sbjct:   79 YRVLDTVIMGHEKLWQVMQERERLYSLPELSDAEGMRVADLEVEFAEMDGYSAESRAGELLEGIGISVEQHDGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDINTIRWLEDFLNESKSTMVIISHDRHFLNSVCTHMADLDYGKLHVFPGNYDEYMTAATQARERMYTNNAKKKAKMAELQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A7Y1TBC1_9GAMM (ABC-F family ATPase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TBC1_9GAMM)

HSP 1 Score: 330 bits (846), Expect = 9.890e-109
Identity = 162/194 (83.51%), Postives = 181/194 (93.30%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            + VLD VIMG+E+LW + QER+RLY L EM+DEEGIRVADLE EFAE+DGY+AESRAGELLE IGI V+QH GPMSA+APGWKLRVLLAQALFSDPDILLLDEPTNNLDI T+RWLE++L  S+STMVIISHDRHFLNSVC+H+ADLDYGKL+VFPGNYDEYMTAATQARER++ADNAKKKAKMADLQAFVSRF
Sbjct:   79 HRVLDVVIMGYERLWEVMQERNRLYSLPEMSDEEGIRVADLEIEFAEMDGYSAESRAGELLEAIGIPVEQHEGPMSAVAPGWKLRVLLAQALFSDPDILLLDEPTNNLDINTIRWLEEFLDKSKSTMVIISHDRHFLNSVCSHIADLDYGKLNVFPGNYDEYMTAATQARERVHADNAKKKAKMADLQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A661BNX9_9GAMM (ABC-F family ATPase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BNX9_9GAMM)

HSP 1 Score: 330 bits (845), Expect = 1.400e-108
Identity = 164/192 (85.42%), Postives = 179/192 (93.23%), Query Frame = 1
Query:    7 VLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            V+D VIMG E+LW L QERDRLY L EM+DEEG+ VADLE EFAE+DGY+AESRAGELLEGIGI+V+QH+GPMSA+APG K RVLLAQALFSDPDILLLDEPTNNLDI TVRWLE++LV S+STMVIISHDRHFLNSVCTHMADLDYGKL +FPGNYDEYMTAATQARERMY+DNAKKKAKMADLQAFVSRF
Sbjct:   81 VVDAVIMGPERLWQLVQERDRLYSLPEMSDEEGMLVADLEVEFAEMDGYSAESRAGELLEGIGISVEQHDGPMSAVAPGLKFRVLLAQALFSDPDILLLDEPTNNLDINTVRWLENFLVESKSTMVIISHDRHFLNSVCTHMADLDYGKLQLFPGNYDEYMTAATQARERMYSDNAKKKAKMADLQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A2D6IW71_9GAMM (ABC-F family ATPase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6IW71_9GAMM)

HSP 1 Score: 327 bits (839), Expect = 1.160e-107
Identity = 162/194 (83.51%), Postives = 176/194 (90.72%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            Y V+DTVIMGHE++W L QER+RLY L EM+DEEG+ VADLE EFAELDGY+AESRA ELLEGIGI V QH GPMSA+APGWKLRVLLAQALFSDPDILLLDEPTNNLDI T+RWLED+L  S+STMVIISHDRHFLNSVCTHMADLDYG+L VFPGNYDEYMTAATQA+ER  ADNAKKK KMA+LQAFVSRF
Sbjct:   79 YRVVDTVIMGHERMWQLIQERERLYSLPEMSDEEGMLVADLEVEFAELDGYSAESRASELLEGIGIPVGQHEGPMSAVAPGWKLRVLLAQALFSDPDILLLDEPTNNLDINTIRWLEDFLNESKSTMVIISHDRHFLNSVCTHMADLDYGELRVFPGNYDEYMTAATQAQERKQADNAKKKVKMAELQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A193LLN3_9GAMM (ABC-F family ATPase n=1 Tax=Woeseia oceani TaxID=1548547 RepID=A0A193LLN3_9GAMM)

HSP 1 Score: 324 bits (831), Expect = 1.800e-106
Identity = 156/194 (80.41%), Postives = 176/194 (90.72%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            + VLDTVIMGHE+LW + QERDRLY   E++DE+G+RVADLE EFAE+DGY+AESRAGELL+ IGI ++QH GPMS +APGWKLRVLLAQALFSDPD+LLLDEPTNNLDI T+RWLE+ L  S++TMVIISHDRHFLNSVCTHMADLDYGKL +FPGNYDEYMTAA QARER+ ADNAKKKAKMADLQAFVSRF
Sbjct:   79 FRVLDTVIMGHERLWEISQERDRLYSQAELSDEDGMRVADLEVEFAEMDGYSAESRAGELLQSIGIPIEQHEGPMSEVAPGWKLRVLLAQALFSDPDVLLLDEPTNNLDINTIRWLEECLNASKATMVIISHDRHFLNSVCTHMADLDYGKLQLFPGNYDEYMTAAEQARERVQADNAKKKAKMADLQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A661GD77_9GAMM (ABC-F family ATPase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GD77_9GAMM)

HSP 1 Score: 324 bits (830), Expect = 2.550e-106
Identity = 156/194 (80.41%), Postives = 179/194 (92.27%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            + VLD VI+G+++LW + QER+RLY L EM+DEEG++VADLE EFAE+DGY+AE+RAGELLEGIGI V+QH GPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDI  +RWLE++L G +STMVIISHDRHFLNSVC+HMADLDYGKL VFPGNYDEYMTAATQARER+++DNAKKK KMA+LQAFVSRF
Sbjct:   79 FRVLDAVILGYDKLWKVMQERNRLYSLPEMSDEEGMQVADLEVEFAEMDGYSAEARAGELLEGIGIPVEQHEGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDINAIRWLEEFLDGRKSTMVIISHDRHFLNSVCSHMADLDYGKLQVFPGNYDEYMTAATQARERVHSDNAKKKVKMAELQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A2N2AE56_9GAMM (ABC-F family ATPase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N2AE56_9GAMM)

HSP 1 Score: 322 bits (824), Expect = 1.730e-105
Identity = 154/194 (79.38%), Postives = 175/194 (90.21%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            YSVLDTVIMGH +LW +K ERDR+Y L EMT+++G++VADLE +FAE DGYTAE+RAGELL G+GI V+QH+GPMSA+APGWKLRVLLAQALFSDPDILLLDEPTNNLDI T+RWLED L    STMVIISHDRHFLNSVCTHMADLDYG+L V+PGNYDEYMTAATQ RER+ ADNAKKKA++A+LQ FVSRF
Sbjct:   79 YSVLDTVIMGHAELWQIKHERDRIYALPEMTEDDGMKVADLEVQFAEFDGYTAEARAGELLLGVGIPVEQHSGPMSAVAPGWKLRVLLAQALFSDPDILLLDEPTNNLDINTIRWLEDVLNARNSTMVIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQVRERLLADNAKKKAQIAELQTFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A849GPI2_9GAMM (ABC-F family ATPase n=3 Tax=Woeseia sp. TaxID=1980636 RepID=A0A849GPI2_9GAMM)

HSP 1 Score: 322 bits (824), Expect = 2.050e-105
Identity = 153/194 (78.87%), Postives = 177/194 (91.24%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            Y VLDTVIMGHE+LW + QER+RLY   +++D++G+RVADLE EFAE+DGY+AESRAGELL+ IGI ++QH GPMSA+APGWKLRVLLAQALFSDPD+LLLDEPTNNLDI T+RWLE++L  S++TMVIISHDRHFLNSVCTHMADLDYG L +FPGNYDEYMTAA QARER+ +DNAKKKAKMADLQAFVSRF
Sbjct:   79 YRVLDTVIMGHERLWEVSQERERLYSQPDLSDDDGMRVADLEVEFAEMDGYSAESRAGELLQSIGIPIEQHTGPMSAVAPGWKLRVLLAQALFSDPDVLLLDEPTNNLDINTIRWLEEFLNASKATMVIISHDRHFLNSVCTHMADLDYGALQLFPGNYDEYMTAAEQARERVQSDNAKKKAKMADLQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A426QLV3_9GAMM (ABC-F family ATPase n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A426QLV3_9GAMM)

HSP 1 Score: 319 bits (818), Expect = 1.690e-104
Identity = 152/194 (78.35%), Postives = 175/194 (90.21%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            Y+VLDTVIMGH +LW ++QER+R+Y L EMT+ +G+RVADLE  FAELDGYTAE+RAGELL+G+ I + QH GPMSA+APGWKLRVLLAQALF+DPDI+LLDEPTNNLDI T+RWLED L     TMVIISHDRHFLNSVCTHMADLDYG+L ++PGNYDEYMTAATQARER+YADNAKKKA++ADLQAFVSRF
Sbjct:   79 YTVLDTVIMGHAELWQVRQERERIYALAEMTEADGMRVADLEVRFAELDGYTAEARAGELLQGLEIPLAQHTGPMSAVAPGWKLRVLLAQALFADPDIMLLDEPTNNLDINTIRWLEDVLNARNCTMVIISHDRHFLNSVCTHMADLDYGELRIYPGNYDEYMTAATQARERLYADNAKKKAQIADLQAFVSRF 272          
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Match: A0A7D9D2J5_9GAMM (Putative transporter fused subunits of ABC superfamily: ATP-binding components n=2 Tax=root TaxID=1 RepID=A0A7D9D2J5_9GAMM)

HSP 1 Score: 321 bits (822), Expect = 1.880e-104
Identity = 156/194 (80.41%), Postives = 177/194 (91.24%), Query Frame = 1
Query:    1 YSVLDTVIMGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAGELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNLDIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGNYDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF 582
            Y VLD VIMG+E+LW + QER+RLY L EM+DE+G+RVA+LE EFAE+DGY+AESRAGELLEGIGI V+QH GPMSAIAPGWKLRVLLAQAL+SDPDILLLDEPTNNLDI  +RWLE +L  S+STMVIISHDRHFLNSVC+HMADLDYGKL VFPGNYDEYMTAATQARER++ADNAKKK ++A+LQ FVSRF
Sbjct:  134 YRVLDAVIMGYEKLWQVMQERNRLYSLPEMSDEDGMRVAELEIEFAEMDGYSAESRAGELLEGIGIPVEQHKGPMSAIAPGWKLRVLLAQALYSDPDILLLDEPTNNLDINAIRWLEGFLETSKSTMVIISHDRHFLNSVCSHMADLDYGKLHVFPGNYDEYMTAATQARERVHADNAKKKVRIAELQTFVSRF 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112293.2574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523K4N5_9GAMM3.360e-11285.57ABC-F family ATPase n=1 Tax=Gammaproteobacteria ba... [more]
A0A7Y1TBC1_9GAMM9.890e-10983.51ABC-F family ATPase n=1 Tax=Woeseiaceae bacterium ... [more]
A0A661BNX9_9GAMM1.400e-10885.42ABC-F family ATPase n=1 Tax=Gammaproteobacteria ba... [more]
A0A2D6IW71_9GAMM1.160e-10783.51ABC-F family ATPase n=1 Tax=Chromatiales bacterium... [more]
A0A193LLN3_9GAMM1.800e-10680.41ABC-F family ATPase n=1 Tax=Woeseia oceani TaxID=1... [more]
A0A661GD77_9GAMM2.550e-10680.41ABC-F family ATPase n=1 Tax=Gammaproteobacteria ba... [more]
A0A2N2AE56_9GAMM1.730e-10579.38ABC-F family ATPase n=2 Tax=Gammaproteobacteria Ta... [more]
A0A849GPI2_9GAMM2.050e-10578.87ABC-F family ATPase n=3 Tax=Woeseia sp. TaxID=1980... [more]
A0A426QLV3_9GAMM1.690e-10478.35ABC-F family ATPase n=1 Tax=Thiohalobacter thiocya... [more]
A0A7D9D2J5_9GAMM1.880e-10480.41Putative transporter fused subunits of ABC superfa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112293contigM-pyrifera_M_contig112293:3..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score308.5
Seed ortholog evalue2.1e-81
Seed eggNOG ortholog1479237.JMLY01000001_gene3209
Preferred nameybiT
KEGG koko:K06158
Hectar predicted targeting categoryother localisation
GOsGO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0050896
EggNOG free text desc.COG0488 ATPase components of ABC transporters with duplicated ATPase domains
EggNOG OGs1MU37@1224,1RPN9@1236,464QS@72275,COG0488@1,COG0488@2
COG Functional cat.S
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size582
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.70405-UTR-M-pyrifera_M_contig112293:2..261622815636.70405-UTR-M-pyrifera_M_contig112293:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112293 3..26 +
1692277498.7468133-UTR-M-pyrifera_M_contig112293:2..261692277498.7468133-UTR-M-pyrifera_M_contig112293:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112293 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.7158732-CDS-M-pyrifera_M_contig112293:26..5841622815636.7158732-CDS-M-pyrifera_M_contig112293:26..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112293 27..584 +
1692277498.7567985-CDS-M-pyrifera_M_contig112293:26..5841692277498.7567985-CDS-M-pyrifera_M_contig112293:26..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112293 27..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112293.2574.1prot_M-pyrifera_M_contig112293.2574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112293 27..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112293.2574.1

>prot_M-pyrifera_M_contig112293.2574.1 ID=prot_M-pyrifera_M_contig112293.2574.1|Name=mRNA_M-pyrifera_M_contig112293.2574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
MGHEQLWLLKQERDRLYGLTEMTDEEGIRVADLEAEFAELDGYTAESRAG
ELLEGIGITVDQHNGPMSAIAPGWKLRVLLAQALFSDPDILLLDEPTNNL
DIKTVRWLEDYLVGSQSTMVIISHDRHFLNSVCTHMADLDYGKLSVFPGN
YDEYMTAATQARERMYADNAKKKAKMADLQAFVSRF
back to top

mRNA from alignment at M-pyrifera_M_contig112293:3..584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112293.2574.1 ID=mRNA_M-pyrifera_M_contig112293.2574.1|Name=mRNA_M-pyrifera_M_contig112293.2574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig112293:3..584+ (Macrocystis pyrifera P11B4 male)
TACTCCGTCCTCGACACCGTCATCATGGGCCACGAACAACTGTGGTTGCT GAAACAGGAACGCGATCGTCTGTACGGCCTGACGGAAATGACCGACGAGG AAGGGATCCGGGTCGCCGATCTCGAAGCGGAATTCGCTGAACTCGACGGC TACACGGCAGAATCGCGCGCCGGTGAGTTGCTCGAAGGCATCGGTATCAC GGTCGACCAGCACAACGGCCCCATGAGTGCGATTGCCCCGGGCTGGAAAC TGCGCGTATTGCTCGCCCAGGCGCTGTTTTCCGACCCCGACATTCTGCTG CTCGACGAGCCGACGAATAATCTCGATATCAAAACCGTGCGCTGGCTCGA GGACTACCTCGTTGGCAGCCAATCGACGATGGTGATCATTTCGCACGATC GGCATTTTCTGAACAGCGTGTGCACGCACATGGCCGATCTGGATTACGGG AAATTAAGCGTGTTCCCGGGCAATTACGATGAATACATGACCGCGGCGAC CCAGGCGCGCGAGCGCATGTATGCGGATAACGCGAAGAAGAAAGCGAAAA TGGCAGACCTGCAGGCCTTCGTCAGTCGCTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112293:3..584+

>mRNA_M-pyrifera_M_contig112293.2574.1 ID=mRNA_M-pyrifera_M_contig112293.2574.1|Name=mRNA_M-pyrifera_M_contig112293.2574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig112293:3..584+ (Macrocystis pyrifera P11B4 male)
ATGGGCCACGAACAACTGTGGTTGCTGAAACAGGAACGCGATCGTCTGTA
CGGCCTGACGGAAATGACCGACGAGGAAGGGATCCGGGTCGCCGATCTCG
AAGCGGAATTCGCTGAACTCGACGGCTACACGGCAGAATCGCGCGCCGGT
GAGTTGCTCGAAGGCATCGGTATCACGGTCGACCAGCACAACGGCCCCAT
GAGTGCGATTGCCCCGGGCTGGAAACTGCGCGTATTGCTCGCCCAGGCGC
TGTTTTCCGACCCCGACATTCTGCTGCTCGACGAGCCGACGAATAATCTC
GATATCAAAACCGTGCGCTGGCTCGAGGACTACCTCGTTGGCAGCCAATC
GACGATGGTGATCATTTCGCACGATCGGCATTTTCTGAACAGCGTGTGCA
CGCACATGGCCGATCTGGATTACGGGAAATTAAGCGTGTTCCCGGGCAAT
TACGATGAATACATGACCGCGGCGACCCAGGCGCGCGAGCGCATGTATGC
GGATAACGCGAAGAAGAAAGCGAAAATGGCAGACCTGCAGGCCTTCGTCA
GTCGCTTCATGGGCCACGAACAACTGTGGTTGCTGAAACAGGAACGCGAT
CGTCTGTACGGCCTGACGGAAATGACCGACGAGGAAGGGATCCGGGTCGC
CGATCTCGAAGCGGAATTCGCTGAACTCGACGGCTACACGGCAGAATCGC
GCGCCGGTGAGTTGCTCGAAGGCATCGGTATCACGGTCGACCAGCACAAC
GGCCCCATGAGTGCGATTGCCCCGGGCTGGAAACTGCGCGTATTGCTCGC
CCAGGCGCTGTTTTCCGACCCCGACATTCTGCTGCTCGACGAGCCGACGA
ATAATCTCGATATCAAAACCGTGCGCTGGCTCGAGGACTACCTCGTTGGC
AGCCAATCGACGATGGTGATCATTTCGCACGATCGGCATTTTCTGAACAG
CGTGTGCACGCACATGGCCGATCTGGATTACGGGAAATTAAGCGTGTTCC
CGGGCAATTACGATGAATACATGACCGCGGCGACCCAGGCGCGCGAGCGC
ATGTATGCGGATAACGCGAAGAAGAAAGCGAAAATGGCAGACCTGCAGGC
CTTCGTCAGTCGCTTC
back to top