mRNA_M-pyrifera_M_contig112291.2573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112291.2573.1
Unique NamemRNA_M-pyrifera_M_contig112291.2573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A5A8EBQ6_CAFRO (General transcription and DNA repair factor IIH helicase subunit XPD n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EBQ6_CAFRO)

HSP 1 Score: 204 bits (519), Expect = 4.310e-58
Identity = 105/156 (67.31%), Postives = 122/156 (78.21%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERL---LASVAGTAADDAHAGGR 465
            V LC F+E Y+R GTDA+LRG+  +D+LK   ++  WCPYFLARHAIS ANVVVYNYQYMLDPKIA +VSR+LEDK+IVVFDEAHNIDNVCIEALSVTLDR  +EGA+RNL RL  EVKR+K+ +  RL+ EY RL   L   AG A   AH GGR
Sbjct:  169 VRLCEFFENYDRLGTDADLRGIYTLDDLKAAGQEHGWCPYFLARHAISFANVVVYNYQYMLDPKIANLVSRELEDKSIVVFDEAHNIDNVCIEALSVTLDRGTLEGAARNLGRLAAEVKRLKSTNVQRLQDEYARLARGLGLAAGGALAGAHEGGR 324          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A812U4V9_9DINO (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U4V9_9DINO)

HSP 1 Score: 199 bits (507), Expect = 7.730e-57
Identity = 96/150 (64.00%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVA-GTAADDAH 453
            V+LC ++E+Y+ +G+DA+L G+   ++LKQL R+K WCPYF+ARH +S ANVVVYNYQYML PKIA +VSR+LEDK+IVVFDEAHNIDN+CIE +SVTLDRRL+E +SRNL  L  E+KR+KA DA RL++EY+RLL+ +  G AA  AH
Sbjct:   88 VKLCEYFEDYDAAGSDADLTGIYNAEDLKQLGREKGWCPYFMARHVLSFANVVVYNYQYMLSPKIAHLVSRELEDKSIVVFDEAHNIDNICIETMSVTLDRRLLEASSRNLNSLAGEIKRMKAADARRLQEEYQRLLSGLTEGGAAALAH 237          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A482RMJ6_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RMJ6_9ARCH)

HSP 1 Score: 181 bits (459), Expect = 4.770e-54
Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 1
Query:   40 RSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLL 417
            R   DA+LRG+  +D++K+  ++  WCPYFL RHAIS AN++VYNYQYMLDPKIA+MVSR+LEDK+IVVFDEAHNIDNVCIE++SVTLDRR ++ ASRNL++L +EVKR+K  DA RL+ EY RLL
Sbjct:   87 RGVADADLRGIFNLDDIKKYGKEHGWCPYFLTRHAISFANIIVYNYQYMLDPKIASMVSRELEDKSIVVFDEAHNIDNVCIESMSVTLDRRALDIASRNLSQLDNEVKRMKDSDAQRLRDEYNRLL 212          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.690e-53
Identity = 86/145 (59.31%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   10 ELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVAGTAA 441
            E C+++E +ER GTDA +  G+ G+D+LK+L ++K WCPYFL RH I+LA+V+VYNYQY+LDPKIATMVSR+LE  +IVVFDEAHNIDNVCIEALS+TLD+R+++ +  N+  L  +V  +K  D  RL  EYERL+  +AGT A
Sbjct:  171 EACTYFEAFERVGTDAAIPMGIYGLDDLKKLGKEKGWCPYFLTRHCINLADVIVYNYQYLLDPKIATMVSRELESDSIVVFDEAHNIDNVCIEALSITLDKRMLDTSLANIDNLKRQVSNLKESDRRRLTDEYERLVRGLAGTGA 315          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.450e-50
Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
            VE C FYEEY+++G+DA +  G+  +D+LK L R+K WCPYFLARH I+ A V+VYNYQYMLDPK+A MVSR+LE +++V+FDEAHNIDNVCIEALSV LDRR I  A ++L  +  +V+ VK  DA+RL+ EY RL+A +
Sbjct:  196 VETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGL 336          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S0H9N8_9EUKA (DNA helicase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H9N8_9EUKA)

HSP 1 Score: 179 bits (455), Expect = 2.240e-50
Identity = 82/139 (58.99%), Postives = 112/139 (80.58%), Query Frame = 1
Query:   10 ELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
            +LC FYEEY RSG+DA+L G+  + ++  L  D+ WCPY++ARH I+ ANVVVYNYQYMLDPKI+ MVSR++E ++I+VFDEAHNIDNVCIEALSVTL++R++   S NL +L  E+K+V+ +DA RL+ EY+ L+A +
Sbjct:  249 DLCDFYEEYNRSGSDAQLSGIFSLHDMMTLGHDRKWCPYYVARHMINRANVVVYNYQYMLDPKISGMVSREIEKESIIVFDEAHNIDNVCIEALSVTLNKRILRRCSENLRKLEGELKQVETKDATRLQAEYKSLVAGL 387          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1TAR3_9CHLO (DNA helicase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1TAR3_9CHLO)

HSP 1 Score: 174 bits (440), Expect = 1.190e-49
Identity = 83/141 (58.87%), Postives = 111/141 (78.72%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAELR-GVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
            +ELC F+E +ER+G++A L  GV  + +++Q  R K WCPYFLARH IS +NVVVYNYQYMLDPK++ MVSR++E +++VVFDEAHNIDNVCIEALS+ L +  +EGA RN+ RL   V+R KA DA RL+ EY+RL++ +
Sbjct:  138 IELCDFFEGHERAGSEALLPPGVYTLHDIRQFGRKKGWCPYFLARHMISFSNVVVYNYQYMLDPKVSQMVSREMERESVVVFDEAHNIDNVCIEALSINLRQATLEGAQRNITRLQHAVERAKATDADRLRNEYQRLVSGL 278          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 179 bits (455), Expect = 1.940e-49
Identity = 83/144 (57.64%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    1 SGVELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVA 429
            + VELC +YEEYE++GTDA +  G+  +D+LK+L +D+ WCPYFLARH I+ AN+++YNYQY+LDPK+A +VS++LE ++IVVFDEAHNIDNVCIEALSV LD R ++ A+R L +L  EV ++K +DA +L +EY+RL+  +A
Sbjct:  151 ANVELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLA 294          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.360e-49
Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
            VE C FYEEY+++G+DA +  G+  +D+LK L R+K WCPYFLARH I+ A V+VYNYQYMLDPK+A MVSR+LE +++V+FDEAHNIDNVCIEALSV LDRR I  A ++L  +  +V+ VK  DA+RL+ EY RL+A +
Sbjct:  196 VETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGL 336          
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1UJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJA8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.050e-48
Identity = 77/146 (52.74%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    7 VELCSFYEEYERSGTDAELR-GVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVAGTAA 441
            VELC FYE Y+++GTDA +  G+  +++L+ L R++ WCPYFLARH +  ANV++YNYQYMLDPK+A +VS +LE+ ++VVFDEAHNIDNVCIEA+SV + R +++ ++R+L+ L + V+  K  DA RL  EY+RL++ +A + A
Sbjct:  132 VELCDFYENYDQNGTDAVVPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQVSRPILDASTRSLSSLSNLVEEAKRSDAERLNAEYQRLVSGLAASGA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EBQ6_CAFRO4.310e-5867.31General transcription and DNA repair factor IIH he... [more]
A0A812U4V9_9DINO7.730e-5764.00General transcription and DNA repair factor IIH he... [more]
A0A482RMJ6_9ARCH4.770e-5467.46Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S1CFN5_9STRA2.690e-5359.31Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2GG08_9STRA1.450e-5060.28DNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]
A0A7S0H9N8_9EUKA2.240e-5058.99DNA helicase (Fragment) n=1 Tax=Amorphochlora amoe... [more]
A0A7S1TAR3_9CHLO1.190e-4958.87DNA helicase (Fragment) n=1 Tax=Tetraselmis chuii ... [more]
K8YZX4_NANGC1.940e-4957.64General transcription and DNA repair factor IIH he... [more]
A0A7S2D9H7_9STRA2.360e-4960.28General transcription and DNA repair factor IIH he... [more]
A0A7S1UJA8_9STRA1.050e-4852.74Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112291contigM-pyrifera_M_contig112291:112..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score174.5
Seed ortholog evalue4e-41
Seed eggNOG ortholog296587.XP_002499882.1
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.HELICc2
EggNOG OGs34JH5@3041,37KDD@33090,COG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6705356-CDS-M-pyrifera_M_contig112291:111..5851622815636.6705356-CDS-M-pyrifera_M_contig112291:111..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112291 112..585 -
1692277498.7335277-CDS-M-pyrifera_M_contig112291:111..5851692277498.7335277-CDS-M-pyrifera_M_contig112291:111..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112291 112..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112291.2573.1prot_M-pyrifera_M_contig112291.2573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112291 112..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112291.2573.1

>prot_M-pyrifera_M_contig112291.2573.1 ID=prot_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
SGVELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAIS
LANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVT
LDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVAGTAADDA
HAGGRGGG
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mRNA from alignment at M-pyrifera_M_contig112291:112..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112291.2573.1 ID=mRNA_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig112291:112..585- (Macrocystis pyrifera P11B4 male)
AGTGGAGTAGAATTATGCTCCTTCTATGAAGAATATGAGCGCAGTGGCAC AGATGCAGAACTTCGTGGTGTACTTGGAATTGATGAATTGAAGCAATTAG CACGTGACAAGCATTGGTGTCCTTATTTCTTGGCAAGGCATGCCATTTCT CTAGCAAATGTTGTTGTGTACAATTACCAATACATGCTTGACCCAAAGAT TGCAACCATGGTGAGTCGGGATTTGGAAGATAAGGCAATTGTTGTCTTTG ATGAAGCTCACAACATTGACAATGTCTGCATTGAAGCTCTCTCTGTGACA CTTGATAGAAGACTCATTGAAGGTGCTTCAAGAAATCTCGCCAGACTTGG AGATGAAGTCAAACGTGTCAAAGCAGAAGATGCTGCAAGATTGAAGCAAG AGTATGAACGCCTCCTTGCGTCTGTTGCAGGTACAGCTGCTGATGATGCA CATGCAGGCGGAAGAGGTGGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112291:112..585-

>mRNA_M-pyrifera_M_contig112291.2573.1 ID=mRNA_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig112291:112..585- (Macrocystis pyrifera P11B4 male)
AGTGGAGTAGAATTATGCTCCTTCTATGAAGAATATGAGCGCAGTGGCAC
AGATGCAGAACTTCGTGGTGTACTTGGAATTGATGAATTGAAGCAATTAG
CACGTGACAAGCATTGGTGTCCTTATTTCTTGGCAAGGCATGCCATTTCT
CTAGCAAATGTTGTTGTGTACAATTACCAATACATGCTTGACCCAAAGAT
TGCAACCATGGTGAGTCGGGATTTGGAAGATAAGGCAATTGTTGTCTTTG
ATGAAGCTCACAACATTGACAATGTCTGCATTGAAGCTCTCTCTGTGACA
CTTGATAGAAGACTCATTGAAGGTGCTTCAAGAAATCTCGCCAGACTTGG
AGATGAAGTCAAACGTGTCAAAGCAGAAGATGCTGCAAGATTGAAGCAAG
AGTATGAACGCCTCCTTGCGTCTGTTGCAGGTACAGCTGCTGATGATGCA
CATGCAGGCGGAAGAGGTGGTGGTAGTGGAGTAGAATTATGCTCCTTCTA
TGAAGAATATGAGCGCAGTGGCACAGATGCAGAACTTCGTGGTGTACTTG
GAATTGATGAATTGAAGCAATTAGCACGTGACAAGCATTGGTGTCCTTAT
TTCTTGGCAAGGCATGCCATTTCTCTAGCAAATGTTGTTGTGTACAATTA
CCAATACATGCTTGACCCAAAGATTGCAACCATGGTGAGTCGGGATTTGG
AAGATAAGGCAATTGTTGTCTTTGATGAAGCTCACAACATTGACAATGTC
TGCATTGAAGCTCTCTCTGTGACACTTGATAGAAGACTCATTGAAGGTGC
TTCAAGAAATCTCGCCAGACTTGGAGATGAAGTCAAACGTGTCAAAGCAG
AAGATGCTGCAAGATTGAAGCAAGAGTATGAACGCCTCCTTGCGTCTGTT
GCAGGTACAGCTGCTGATGATGCACATGCAGGCGGAAGAGGTGGTGGT
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