mRNA_M-pyrifera_M_contig112291.2573.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A5A8EBQ6_CAFRO (General transcription and DNA repair factor IIH helicase subunit XPD n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EBQ6_CAFRO) HSP 1 Score: 204 bits (519), Expect = 4.310e-58 Identity = 105/156 (67.31%), Postives = 122/156 (78.21%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERL---LASVAGTAADDAHAGGR 465
V LC F+E Y+R GTDA+LRG+ +D+LK ++ WCPYFLARHAIS ANVVVYNYQYMLDPKIA +VSR+LEDK+IVVFDEAHNIDNVCIEALSVTLDR +EGA+RNL RL EVKR+K+ + RL+ EY RL L AG A AH GGR
Sbjct: 169 VRLCEFFENYDRLGTDADLRGIYTLDDLKAAGQEHGWCPYFLARHAISFANVVVYNYQYMLDPKIANLVSRELEDKSIVVFDEAHNIDNVCIEALSVTLDRGTLEGAARNLGRLAAEVKRLKSTNVQRLQDEYARLARGLGLAAGGALAGAHEGGR 324
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A812U4V9_9DINO (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U4V9_9DINO) HSP 1 Score: 199 bits (507), Expect = 7.730e-57 Identity = 96/150 (64.00%), Postives = 124/150 (82.67%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVA-GTAADDAH 453
V+LC ++E+Y+ +G+DA+L G+ ++LKQL R+K WCPYF+ARH +S ANVVVYNYQYML PKIA +VSR+LEDK+IVVFDEAHNIDN+CIE +SVTLDRRL+E +SRNL L E+KR+KA DA RL++EY+RLL+ + G AA AH
Sbjct: 88 VKLCEYFEDYDAAGSDADLTGIYNAEDLKQLGREKGWCPYFMARHVLSFANVVVYNYQYMLSPKIAHLVSRELEDKSIVVFDEAHNIDNICIETMSVTLDRRLLEASSRNLNSLAGEIKRMKAADARRLQEEYQRLLSGLTEGGAAALAH 237
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A482RMJ6_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RMJ6_9ARCH) HSP 1 Score: 181 bits (459), Expect = 4.770e-54 Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 1
Query: 40 RSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLL 417
R DA+LRG+ +D++K+ ++ WCPYFL RHAIS AN++VYNYQYMLDPKIA+MVSR+LEDK+IVVFDEAHNIDNVCIE++SVTLDRR ++ ASRNL++L +EVKR+K DA RL+ EY RLL
Sbjct: 87 RGVADADLRGIFNLDDIKKYGKEHGWCPYFLTRHAISFANIIVYNYQYMLDPKIASMVSRELEDKSIVVFDEAHNIDNVCIESMSVTLDRRALDIASRNLSQLDNEVKRMKDSDAQRLRDEYNRLL 212
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA) HSP 1 Score: 180 bits (457), Expect = 2.690e-53 Identity = 86/145 (59.31%), Postives = 114/145 (78.62%), Query Frame = 1
Query: 10 ELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVAGTAA 441
E C+++E +ER GTDA + G+ G+D+LK+L ++K WCPYFL RH I+LA+V+VYNYQY+LDPKIATMVSR+LE +IVVFDEAHNIDNVCIEALS+TLD+R+++ + N+ L +V +K D RL EYERL+ +AGT A
Sbjct: 171 EACTYFEAFERVGTDAAIPMGIYGLDDLKKLGKEKGWCPYFLTRHCINLADVIVYNYQYLLDPKIATMVSRELESDSIVVFDEAHNIDNVCIEALSITLDKRMLDTSLANIDNLKRQVSNLKESDRRRLTDEYERLVRGLAGTGA 315
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.450e-50 Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
VE C FYEEY+++G+DA + G+ +D+LK L R+K WCPYFLARH I+ A V+VYNYQYMLDPK+A MVSR+LE +++V+FDEAHNIDNVCIEALSV LDRR I A ++L + +V+ VK DA+RL+ EY RL+A +
Sbjct: 196 VETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGL 336
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S0H9N8_9EUKA (DNA helicase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H9N8_9EUKA) HSP 1 Score: 179 bits (455), Expect = 2.240e-50 Identity = 82/139 (58.99%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 10 ELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
+LC FYEEY RSG+DA+L G+ + ++ L D+ WCPY++ARH I+ ANVVVYNYQYMLDPKI+ MVSR++E ++I+VFDEAHNIDNVCIEALSVTL++R++ S NL +L E+K+V+ +DA RL+ EY+ L+A +
Sbjct: 249 DLCDFYEEYNRSGSDAQLSGIFSLHDMMTLGHDRKWCPYYVARHMINRANVVVYNYQYMLDPKISGMVSREIEKESIIVFDEAHNIDNVCIEALSVTLNKRILRRCSENLRKLEGELKQVETKDATRLQAEYKSLVAGL 387
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1TAR3_9CHLO (DNA helicase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1TAR3_9CHLO) HSP 1 Score: 174 bits (440), Expect = 1.190e-49 Identity = 83/141 (58.87%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAELR-GVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
+ELC F+E +ER+G++A L GV + +++Q R K WCPYFLARH IS +NVVVYNYQYMLDPK++ MVSR++E +++VVFDEAHNIDNVCIEALS+ L + +EGA RN+ RL V+R KA DA RL+ EY+RL++ +
Sbjct: 138 IELCDFFEGHERAGSEALLPPGVYTLHDIRQFGRKKGWCPYFLARHMISFSNVVVYNYQYMLDPKVSQMVSREMERESVVVFDEAHNIDNVCIEALSINLRQATLEGAQRNITRLQHAVERAKATDADRLRNEYQRLVSGL 278
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC) HSP 1 Score: 179 bits (455), Expect = 1.940e-49 Identity = 83/144 (57.64%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 1 SGVELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVA 429
+ VELC +YEEYE++GTDA + G+ +D+LK+L +D+ WCPYFLARH I+ AN+++YNYQY+LDPK+A +VS++LE ++IVVFDEAHNIDNVCIEALSV LD R ++ A+R L +L EV ++K +DA +L +EY+RL+ +A
Sbjct: 151 ANVELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLA 294
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.360e-49 Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAEL-RGVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASV 426
VE C FYEEY+++G+DA + G+ +D+LK L R+K WCPYFLARH I+ A V+VYNYQYMLDPK+A MVSR+LE +++V+FDEAHNIDNVCIEALSV LDRR I A ++L + +V+ VK DA+RL+ EY RL+A +
Sbjct: 196 VETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGL 336
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Match: A0A7S1UJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJA8_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.050e-48 Identity = 77/146 (52.74%), Postives = 113/146 (77.40%), Query Frame = 1
Query: 7 VELCSFYEEYERSGTDAELR-GVLGIDELKQLARDKHWCPYFLARHAISLANVVVYNYQYMLDPKIATMVSRDLEDKAIVVFDEAHNIDNVCIEALSVTLDRRLIEGASRNLARLGDEVKRVKAEDAARLKQEYERLLASVAGTAA 441
VELC FYE Y+++GTDA + G+ +++L+ L R++ WCPYFLARH + ANV++YNYQYMLDPK+A +VS +LE+ ++VVFDEAHNIDNVCIEA+SV + R +++ ++R+L+ L + V+ K DA RL EY+RL++ +A + A
Sbjct: 132 VELCDFYENYDQNGTDAVVPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQVSRPILDASTRSLSSLSNLVEEAKRSDAERLNAEYQRLVSGLAASGA 277 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112291.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112291.2573.1 >prot_M-pyrifera_M_contig112291.2573.1 ID=prot_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp SGVELCSFYEEYERSGTDAELRGVLGIDELKQLARDKHWCPYFLARHAISback to top mRNA from alignment at M-pyrifera_M_contig112291:112..585- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112291.2573.1 ID=mRNA_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig112291:112..585- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112291:112..585- >mRNA_M-pyrifera_M_contig112291.2573.1 ID=mRNA_M-pyrifera_M_contig112291.2573.1|Name=mRNA_M-pyrifera_M_contig112291.2573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig112291:112..585- (Macrocystis pyrifera P11B4 male)back to top |