mRNA_M-pyrifera_M_contig112099.2540.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112099.2540.1
Unique NamemRNA_M-pyrifera_M_contig112099.2540.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112099.2540.1 vs. uniprot
Match: A0A7V9A9Y2_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A9Y2_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 3.680e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLTK 108
            DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLTK
Sbjct:  172 DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLTK 207
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BLAST of mRNA_M-pyrifera_M_contig112099.2540.1 vs. uniprot
Match: UPI001CCBE087 (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCBE087)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLT 105
            DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLT
Sbjct:  177 DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLT 211
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BLAST of mRNA_M-pyrifera_M_contig112099.2540.1 vs. uniprot
Match: A0A2S8F662_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F662_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 3.170e-9
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 DEGMKSVGQMKNMEVLRTEGAFISDEGMAHLADLTKM 111
            DEGMK V QMK++EVLRTEGAFISDEGMAHLA LTKM
Sbjct:  177 DEGMKFVAQMKDLEVLRTEGAFISDEGMAHLAGLTKM 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112099.2540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7V9A9Y2_9BACT3.680e-12100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
UPI001CCBE0871.730e-11100.00hypothetical protein n=1 Tax=Bremerella volcania T... [more]
A0A2S8F662_9BACT3.170e-986.49Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112099contigM-pyrifera_M_contig112099:1..585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.8589613-UTR-M-pyrifera_M_contig112099:0..91622815634.8589613-UTR-M-pyrifera_M_contig112099:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112099 1..9 +
1692277497.8070407-UTR-M-pyrifera_M_contig112099:0..91692277497.8070407-UTR-M-pyrifera_M_contig112099:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112099 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.8696647-CDS-M-pyrifera_M_contig112099:9..5851622815634.8696647-CDS-M-pyrifera_M_contig112099:9..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112099 10..585 +
1692277497.8216245-CDS-M-pyrifera_M_contig112099:9..5851692277497.8216245-CDS-M-pyrifera_M_contig112099:9..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112099 10..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112099.2540.1prot_M-pyrifera_M_contig112099.2540.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112099 10..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112099.2540.1

>prot_M-pyrifera_M_contig112099.2540.1 ID=prot_M-pyrifera_M_contig112099.2540.1|Name=mRNA_M-pyrifera_M_contig112099.2540.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MKSVGQMKNMEVLRTEGAFISDEGMAHLADLTKMRFLNLRDKKITDKGIA
YLSGMKNLETLELNEVACSNEGLSHIQECVKLKKLHLFRTKVTDDGMQYL
TEMKDMEDLKFRQSPVRGEQMEQLKGMTKLKRLDVSETPFVDDGVGVVAT
FENLELLNLWNTFITDDGLAPVSNLKKLKDLDLQNCALSDAG
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mRNA from alignment at M-pyrifera_M_contig112099:1..585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112099.2540.1 ID=mRNA_M-pyrifera_M_contig112099.2540.1|Name=mRNA_M-pyrifera_M_contig112099.2540.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig112099:1..585+ (Macrocystis pyrifera P11B4 male)
GACGAAGGGATGAAGTCGGTTGGCCAGATGAAGAACATGGAAGTGCTGCG
AACCGAGGGTGCTTTCATCAGCGACGAAGGAATGGCCCACCTGGCCGACC
TGACCAAGATGCGTTTCTTGAACCTGCGTGATAAGAAGATCACCGATAAG
GGAATCGCCTATCTATCTGGGATGAAGAACCTGGAGACGCTGGAACTGAA
CGAAGTCGCGTGTTCCAACGAAGGGCTTTCGCACATCCAAGAGTGCGTCA
AGCTGAAGAAGCTGCACTTGTTCCGTACCAAGGTCACCGACGACGGAATG
CAGTACCTGACCGAGATGAAGGACATGGAAGACTTGAAGTTCCGCCAGTC
GCCGGTTCGTGGCGAGCAGATGGAACAGCTCAAAGGGATGACCAAGCTGA
AACGCCTGGACGTGAGCGAAACCCCGTTTGTCGACGATGGCGTGGGCGTG
GTCGCGACCTTTGAAAACCTGGAACTGCTCAACCTGTGGAACACGTTCAT
CACCGACGATGGGCTGGCACCGGTTAGTAATCTCAAGAAGCTGAAAGATT
TAGACCTACAAAACTGCGCGTTGAGCGATGCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112099:1..585+

>mRNA_M-pyrifera_M_contig112099.2540.1 ID=mRNA_M-pyrifera_M_contig112099.2540.1|Name=mRNA_M-pyrifera_M_contig112099.2540.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig112099:1..585+ (Macrocystis pyrifera P11B4 male)
ATGAAGTCGGTTGGCCAGATGAAGAACATGGAAGTGCTGCGAACCGAGGG
TGCTTTCATCAGCGACGAAGGAATGGCCCACCTGGCCGACCTGACCAAGA
TGCGTTTCTTGAACCTGCGTGATAAGAAGATCACCGATAAGGGAATCGCC
TATCTATCTGGGATGAAGAACCTGGAGACGCTGGAACTGAACGAAGTCGC
GTGTTCCAACGAAGGGCTTTCGCACATCCAAGAGTGCGTCAAGCTGAAGA
AGCTGCACTTGTTCCGTACCAAGGTCACCGACGACGGAATGCAGTACCTG
ACCGAGATGAAGGACATGGAAGACTTGAAGTTCCGCCAGTCGCCGGTTCG
TGGCGAGCAGATGGAACAGCTCAAAGGGATGACCAAGCTGAAACGCCTGG
ACGTGAGCGAAACCCCGTTTGTCGACGATGGCGTGGGCGTGGTCGCGACC
TTTGAAAACCTGGAACTGCTCAACCTGTGGAACACGTTCATCACCGACGA
TGGGCTGGCACCGGTTAGTAATCTCAAGAAGCTGAAAGATTTAGACCTAC
AAAACTGCGCGTTGAGCGATGCCGGCATGAAGTCGGTTGGCCAGATGAAG
AACATGGAAGTGCTGCGAACCGAGGGTGCTTTCATCAGCGACGAAGGAAT
GGCCCACCTGGCCGACCTGACCAAGATGCGTTTCTTGAACCTGCGTGATA
AGAAGATCACCGATAAGGGAATCGCCTATCTATCTGGGATGAAGAACCTG
GAGACGCTGGAACTGAACGAAGTCGCGTGTTCCAACGAAGGGCTTTCGCA
CATCCAAGAGTGCGTCAAGCTGAAGAAGCTGCACTTGTTCCGTACCAAGG
TCACCGACGACGGAATGCAGTACCTGACCGAGATGAAGGACATGGAAGAC
TTGAAGTTCCGCCAGTCGCCGGTTCGTGGCGAGCAGATGGAACAGCTCAA
AGGGATGACCAAGCTGAAACGCCTGGACGTGAGCGAAACCCCGTTTGTCG
ACGATGGCGTGGGCGTGGTCGCGACCTTTGAAAACCTGGAACTGCTCAAC
CTGTGGAACACGTTCATCACCGACGATGGGCTGGCACCGGTTAGTAATCT
CAAGAAGCTGAAAGATTTAGACCTACAAAACTGCGCGTTGAGCGATGCCG
GC
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