mRNA_M-pyrifera_M_contig112070.2528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112070.2528.1
Unique NamemRNA_M-pyrifera_M_contig112070.2528.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A1G0E5I3_9GAMM (LysM domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1G0E5I3_9GAMM)

HSP 1 Score: 226 bits (577), Expect = 5.110e-71
Identity = 108/193 (55.96%), Postives = 138/193 (71.50%), Query Frame = 1
Query:   10 DVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEA-RKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +V   E++ ANP I  YK+  G  + +P Q+ILP  K+R+GIVIN+PE+RLYYF  DG+ + TYPV LGR  WRTP+    VVRK+E PTW+VP SI+     K G  LPD++PPGP+NPLG YA+YL   GYLIHGT +PNS+G  +SSGC+R+  + +  LY  V+ G PV II YPNK GWRG+KLYLES
Sbjct:   58 EVSYDELLEANPNINFYKLKVGQRIFIPKQFILP--KFRQGIVINIPELRLYYFDPDGSHVHTYPVGLGRMGWRTPMAAATVVRKEEDPTWYVPNSIRDYVLNKTGELLPDAVPPGPKNPLGKYALYLSKNGYLIHGTNAPNSVGTFISSGCMRLLREPIELLYQEVQVGTPVRIINYPNKAGWRGDKLYLES 248          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A2D6YD82_9GAMM (LysM domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2D6YD82_9GAMM)

HSP 1 Score: 225 bits (573), Expect = 1.270e-70
Identity = 115/195 (58.97%), Postives = 145/195 (74.36%), Query Frame = 1
Query:    4 RFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAE-ARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            + DVGI E+  ANP I   K+  G  VI+P Q+ILPPQ++RKGIV+N+ E+RLYYF+ +G  I TYPV++GR  WRTP   T +V+ +E PTWHVP SI A    K G ELP+SIPPGP NPLG  AIYLG+P YLIHGT +P+SIG+ VSSGCIRM+N+DV  L+  VK GDPV+II +  KVG + N+LYLE+
Sbjct:   47 KHDVGIIELKRANPTISRLKV--GDVVIIPKQFILPPQEFRKGIVLNMAELRLYYFSPNGQFIFTYPVSMGRIGWRTPSASTTIVKMKEYPTWHVPESIAAHHLEKTGNELPESIPPGPDNPLGTRAIYLGLPKYLIHGTNAPSSIGQYVSSGCIRMYNQDVEQLFMFVKPGDPVTIINHRIKVGVKDNQLYLEA 239          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: K2DRN8_9BACT (LysM domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2DRN8_9BACT)

HSP 1 Score: 220 bits (561), Expect = 1.340e-68
Identity = 105/193 (54.40%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   10 DVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEA-RKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +V   E++ ANP I  Y++  G  VI+P Q+ILP  K+R+GIVIN  E+RLYYF  DG  I T+PV LGR  WRTPL    VVRK+  P WHVP  I+    +K G  LP+++PPGP+NPLG YA+YL   GYLIHGT +P+S+G  +SSGC+R+  + +  LY   + G PV II+YPNK GWRGNKLYLES
Sbjct:   57 EVSYDELLEANPNINFYRLRVGQKVIIPKQFILP--KFRRGIVINAAELRLYYFTPDGEYIHTFPVGLGRVDWRTPLASATVVRKEADPVWHVPNDIRDYVYKKTGELLPENVPPGPKNPLGSYALYLSKSGYLIHGTNAPHSVGTFISSGCMRLMREPIEMLYQEAQVGTPVHIIHYPNKAGWRGNKLYLES 247          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A423Q2R7_9GAMM (YkuD domain-containing protein n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423Q2R7_9GAMM)

HSP 1 Score: 212 bits (539), Expect = 3.170e-65
Identity = 101/199 (50.75%), Postives = 138/199 (69.35%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-----ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +R++VG  E+  ANP++ P+    GT V++P +Y+LP    R+GIVIN+PEMR+YYF  +G+     + T+P+ +GRE W TPLGKT +VRK+  PTW  PASI+ E    G ELPD +P GP NPLG +A+YLGMP YL+HGT  P  IG  VS GCIR++ +D+  L+S V+ G PV+II  P K+G  GN LY+E+
Sbjct:   56 RRYNVGYRELRLANPEVDPWLPGEGTEVVIPTRYVLPDVP-RRGIVINIPEMRVYYFPPEGSEYAGRVVTHPLGIGREGWSTPLGKTTIVRKKADPTWTPPASIRKEHAAQGEELPDVVPAGPDNPLGQHALYLGMPSYLLHGTNKPAGIGLKVSHGCIRLYPEDIASLFSMVEPGTPVNIISEPYKIGREGNTLYIEA 253          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A2E0J076_9GAMM (L,D-transpeptidase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0J076_9GAMM)

HSP 1 Score: 212 bits (539), Expect = 3.670e-65
Identity = 102/199 (51.26%), Postives = 135/199 (67.84%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAAD-----GTISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +R++VG  E+  ANP + P+    GT V++P +Y+LP    RKGIVIN+PEMRLYY+  +     G + TYP+ +GRE W TPL KT +VRK+  PTW  PASI+AE  K G  LP  +P GP NPLG +A+YLG+P YL+HGT  P  IG  VS GCIR++ +D+  L++ V  G PV+II  P K+GW GN LY+ES
Sbjct:   62 RRYNVGYRELRLANPDVDPWLPGEGTPVVIPTRYVLP-DVARKGIVINIPEMRLYYYPPENSEYAGKVVTYPLGIGREGWSTPLAKTSIVRKKADPTWTPPASIRAEHEKAGDPLPAVVPAGPDNPLGQHALYLGLPSYLLHGTNKPAGIGLKVSHGCIRLYPEDIASLFALVPTGTPVNIISQPYKIGWEGNTLYIES 259          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A0S7Y0H2_9COXI (LysM domain-containing protein n=1 Tax=Coxiella sp. DG_40 TaxID=1703354 RepID=A0A0S7Y0H2_9COXI)

HSP 1 Score: 211 bits (536), Expect = 4.840e-65
Identity = 103/197 (52.28%), Postives = 137/197 (69.54%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPG-PRNPLGPYAIYLG-MPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            + ++V   E++ ANP+I P  ++PGT V++P Q+ILP  KYRKGIVIN+PE+RLYYF  D   + T PV LGR+ WRTP   T V++K+ +PTWHVP +I     KNG ++P+ +PPG P NPLG Y +YLG   GYLIHG   P++IG+  SSGCIR++N  +  LYS V  G  V II+ P+KVGW   +LYLES
Sbjct:   48 KEYEVSYHELLEANPEINPKNLIPGTKVLIPTQFILP--KYRKGIVINIPELRLYYFMPDREHVFTTPVGLGRDSWRTPTMLTGVIKKEANPTWHVPKTILKHEAKNGHQIPNEVPPGDPDNPLGNYVLYLGGKGGYLIHGNNEPDTIGKYYSSGCIRLYNSAMETLYSMVAVGTLVRIIHDPDKVGWLNGELYLES 242          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A3M0YCQ1_9GAMM (L,D-transpeptidase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0YCQ1_9GAMM)

HSP 1 Score: 211 bits (536), Expect = 5.710e-64
Identity = 100/195 (51.28%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +RFD+G  E++  NP + P+    GT +++P Q++LP +  R+GIV+N+PEMRLYY+   G  + TYPV +GRE W TPLGKT +V +  +P+W+ PASI+ E    G  LP  +PPGP NPLG +A+ LG PGYLIHGT  P  IG  VS GCIR++ +D+ +L+SRVK G PV II  P K GW+  KLYLE+
Sbjct:   46 RRFDLGYDELVRVNPGVDPWLPGEGTEIVLPTQFVLP-RAPREGIVLNLPEMRLYYYPPGGREVVTYPVGIGREGWDTPLGKTRIVARVANPSWYPPASIRKEHEAQGDPLPKVVPPGPDNPLGDFALRLGFPGYLIHGTNKPYGIGMRVSHGCIRLYPEDIAELFSRVKVGTPVHIIDQPYKAGWKEGKLYLEA 239          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: U2E4I5_9GAMM (Peptidoglycan LD-transpeptidase lipoprotein YkuD family SPOR domain-containing n=2 Tax=Salinisphaera TaxID=180541 RepID=U2E4I5_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 6.080e-64
Identity = 101/199 (50.75%), Postives = 134/199 (67.34%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADGT-----ISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +R++VG  E+  +NP + P+    GT +++P  Y+LP    RKGIVIN+PEMRLYYF   G+     + TYP+ +GRE W TPL KT VVRK+  PTW  PASI+AE  K G  LP  +P GP NPLG +A+YLG+P YL+HGT  P  IG  VS GCIR++ +D+  L++ V  G PV+I+  P K+GW GN LY+ES
Sbjct:   63 RRYNVGYRELRLSNPDVDPWLPGDGTPMVIPTHYVLP-NVPRKGIVINIPEMRLYYFPPAGSEYAGKVVTYPLGIGREGWSTPLAKTTVVRKRADPTWTPPASIRAEHEKAGDPLPAVVPAGPDNPLGQHALYLGLPSYLLHGTNKPAGIGLKVSHGCIRLYPEDIASLFALVPTGTPVNIVSEPYKIGWEGNTLYIES 260          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: A0A2E3MFB4_9GAMM (LysM domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFB4_9GAMM)

HSP 1 Score: 206 bits (524), Expect = 7.310e-63
Identity = 93/195 (47.69%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAADG-TISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            QR  +G  E++ ANP++ P + + GT ++VP +++LP +  RKGIVIN+ E+RLYY+  +  T+ TYP+ +GR+ W TP G   ++++++ P W VPAS+ A+A +NG  LP  +PPGP NPLG YA+ L  P YLIHGT  PN +GR VS+GCIRM+ +D+  +YS+V    PV+I+  P K GW   KLYLE+
Sbjct:   74 QRNHIGYYELLEANPQVNPMQPIAGTKILVPTRFVLP-KAPRKGIVINLAELRLYYYPPNSNTVQTYPIGIGRQGWETPTGTLKIIQRKKDPAWRVPASVWADAAENGIVLPKVVPPGPDNPLGQYALRLSRPNYLIHGTNKPNGVGRRVSAGCIRMYPEDIKRMYSQVSINTPVTIVNQPFKTGWLNGKLYLEA 267          
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Match: D5BWC6_NITHN (ErfK/YbiS/YcfS/YnhG family protein n=3 Tax=Nitrosococcus TaxID=1227 RepID=D5BWC6_NITHN)

HSP 1 Score: 205 bits (521), Expect = 2.130e-62
Identity = 102/199 (51.26%), Postives = 136/199 (68.34%), Query Frame = 1
Query:    1 QRFDVGISEMMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAAD-----GTISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRELPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNKDVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES 582
            +R+DVG SE+ +ANP I P+    G+ V+VP QY+LP Q  R+GIVIN+ EMRLYYF        G + T+P+ +GRE W TPLGKT V+ K+++PTW  P SI+AE   NG  LP  +PPG  NPLG +A+ LGMPGYLIHGT  P  +G  VS GCIR++ +D+  L+++VK G  V+I+Y P K G +   LYLE+
Sbjct:   64 RRYDVGYSEIKAANPNIDPWLPKEGSPVVVPTQYVLP-QAPRRGIVINLAEMRLYYFPESQPGQPGVVVTHPIGIGREGWSTPLGKTSVISKKKNPTWIPPESIRAEHEANGDPLPKVVPPGSDNPLGKFALRLGMPGYLIHGTNRPWGVGMRVSHGCIRLYPEDIASLFAQVKVGASVNIVYQPFKAGIKDAVLYLEA 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112070.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G0E5I3_9GAMM5.110e-7155.96LysM domain-containing protein n=3 Tax=Gammaproteo... [more]
A0A2D6YD82_9GAMM1.270e-7058.97LysM domain-containing protein n=1 Tax=Legionellal... [more]
K2DRN8_9BACT1.340e-6854.40LysM domain-containing protein n=1 Tax=uncultured ... [more]
A0A423Q2R7_9GAMM3.170e-6550.75YkuD domain-containing protein n=2 Tax=Salinisphae... [more]
A0A2E0J076_9GAMM3.670e-6551.26L,D-transpeptidase n=2 Tax=Gammaproteobacteria Tax... [more]
A0A0S7Y0H2_9COXI4.840e-6552.28LysM domain-containing protein n=1 Tax=Coxiella sp... [more]
A0A3M0YCQ1_9GAMM5.710e-6451.28L,D-transpeptidase n=1 Tax=Gammaproteobacteria bac... [more]
U2E4I5_9GAMM6.080e-6450.75Peptidoglycan LD-transpeptidase lipoprotein YkuD f... [more]
A0A2E3MFB4_9GAMM7.310e-6347.69LysM domain-containing protein n=1 Tax=Legionellal... [more]
D5BWC6_NITHN2.130e-6251.26ErfK/YbiS/YcfS/YnhG family protein n=3 Tax=Nitroso... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112070contigM-pyrifera_M_contig112070:5..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score203.0
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog1033802.SSPSH_002254
Preferred nameerfK
KEGG koko:K16291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ErfK YbiS YcfS YnhG family protein
EggNOG OGs1MVYT@1224,1RMNC@1236,COG1376@1,COG1376@2
COG Functional cat.M
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002,ko01011
Exons1
Model size582
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.3100386-UTR-M-pyrifera_M_contig112070:4..311622815634.3100386-UTR-M-pyrifera_M_contig112070:4..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112070 5..31 +
1692277497.611709-UTR-M-pyrifera_M_contig112070:4..311692277497.611709-UTR-M-pyrifera_M_contig112070:4..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112070 5..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.3270738-CDS-M-pyrifera_M_contig112070:31..5861622815634.3270738-CDS-M-pyrifera_M_contig112070:31..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112070 32..586 +
1692277497.620839-CDS-M-pyrifera_M_contig112070:31..5861692277497.620839-CDS-M-pyrifera_M_contig112070:31..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112070 32..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112070.2528.1prot_M-pyrifera_M_contig112070.2528.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112070 32..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112070.2528.1

>prot_M-pyrifera_M_contig112070.2528.1 ID=prot_M-pyrifera_M_contig112070.2528.1|Name=mRNA_M-pyrifera_M_contig112070.2528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MMSANPKIKPYKMLPGTNVIVPAQYILPPQKYRKGIVINVPEMRLYYFAA
DGTISTYPVALGREKWRTPLGKTYVVRKQESPTWHVPASIQAEARKNGRE
LPDSIPPGPRNPLGPYAIYLGMPGYLIHGTTSPNSIGRLVSSGCIRMFNK
DVTDLYSRVKKGDPVSIIYYPNKVGWRGNKLYLES
back to top

mRNA from alignment at M-pyrifera_M_contig112070:5..586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112070.2528.1 ID=mRNA_M-pyrifera_M_contig112070.2528.1|Name=mRNA_M-pyrifera_M_contig112070.2528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig112070:5..586+ (Macrocystis pyrifera P11B4 male)
CAGCGTTTTGATGTCGGCATCTCTGAAATGATGAGTGCAAATCCAAAAAT CAAACCCTACAAAATGCTACCTGGCACCAATGTCATTGTCCCTGCACAAT ATATATTACCACCTCAAAAATACCGTAAAGGCATTGTCATCAATGTTCCT GAAATGCGCCTTTATTACTTTGCTGCAGATGGGACTATATCAACATATCC TGTGGCCTTAGGCCGTGAGAAATGGCGTACACCGCTGGGAAAAACTTATG TTGTACGTAAACAAGAGTCACCAACTTGGCATGTACCCGCGTCTATCCAA GCTGAGGCGCGCAAAAATGGTCGTGAATTACCTGATAGCATTCCTCCTGG GCCACGCAATCCATTGGGCCCCTATGCAATTTACCTTGGCATGCCAGGCT ACTTAATCCACGGTACTACCAGTCCGAACAGTATCGGACGCTTAGTTAGT TCCGGCTGCATTCGCATGTTCAACAAAGATGTTACTGATTTATATAGTCG TGTGAAGAAAGGCGATCCGGTCAGTATTATCTACTACCCCAACAAAGTCG GTTGGCGCGGAAATAAACTTTATCTGGAATCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112070:5..586+

>mRNA_M-pyrifera_M_contig112070.2528.1 ID=mRNA_M-pyrifera_M_contig112070.2528.1|Name=mRNA_M-pyrifera_M_contig112070.2528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig112070:5..586+ (Macrocystis pyrifera P11B4 male)
ATGATGAGTGCAAATCCAAAAATCAAACCCTACAAAATGCTACCTGGCAC
CAATGTCATTGTCCCTGCACAATATATATTACCACCTCAAAAATACCGTA
AAGGCATTGTCATCAATGTTCCTGAAATGCGCCTTTATTACTTTGCTGCA
GATGGGACTATATCAACATATCCTGTGGCCTTAGGCCGTGAGAAATGGCG
TACACCGCTGGGAAAAACTTATGTTGTACGTAAACAAGAGTCACCAACTT
GGCATGTACCCGCGTCTATCCAAGCTGAGGCGCGCAAAAATGGTCGTGAA
TTACCTGATAGCATTCCTCCTGGGCCACGCAATCCATTGGGCCCCTATGC
AATTTACCTTGGCATGCCAGGCTACTTAATCCACGGTACTACCAGTCCGA
ACAGTATCGGACGCTTAGTTAGTTCCGGCTGCATTCGCATGTTCAACAAA
GATGTTACTGATTTATATAGTCGTGTGAAGAAAGGCGATCCGGTCAGTAT
TATCTACTACCCCAACAAAGTCGGTTGGCGCGGAAATAAACTTTATCTGG
AATCCATGATGAGTGCAAATCCAAAAATCAAACCCTACAAAATGCTACCT
GGCACCAATGTCATTGTCCCTGCACAATATATATTACCACCTCAAAAATA
CCGTAAAGGCATTGTCATCAATGTTCCTGAAATGCGCCTTTATTACTTTG
CTGCAGATGGGACTATATCAACATATCCTGTGGCCTTAGGCCGTGAGAAA
TGGCGTACACCGCTGGGAAAAACTTATGTTGTACGTAAACAAGAGTCACC
AACTTGGCATGTACCCGCGTCTATCCAAGCTGAGGCGCGCAAAAATGGTC
GTGAATTACCTGATAGCATTCCTCCTGGGCCACGCAATCCATTGGGCCCC
TATGCAATTTACCTTGGCATGCCAGGCTACTTAATCCACGGTACTACCAG
TCCGAACAGTATCGGACGCTTAGTTAGTTCCGGCTGCATTCGCATGTTCA
ACAAAGATGTTACTGATTTATATAGTCGTGTGAAGAAAGGCGATCCGGTC
AGTATTATCTACTACCCCAACAAAGTCGGTTGGCGCGGAAATAAACTTTA
TCTGGAATCC
back to top