mRNA_M-pyrifera_M_contig112050.2523.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112050.2523.1
Unique NamemRNA_M-pyrifera_M_contig112050.2523.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S2WVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVW5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.340e-31
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            Q+A+RELQ+LSD+GIYETL L S+ +AA   GVFH N  L L L+SPH A GA+S + EVMVM+  +DG  S AID+FP+M++DA+EE W+R  E H+  R+  F  +E+D
Sbjct:   24 QFAVRELQKLSDSGIYETLALHSIVSAARQDGVFHFNTHLNLELTSPHFASGAASEKFEVMVMKHKDDGSYSFAIDDFPEMNEDAIEEFWIRKVERHRLLRDEAFRLMERD 134          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S2CU23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU23_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.020e-29
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            ++A+ ELQ+LSD+GIY +L L S+  A+S  GVFH N FLTL L+ PH   G  +  ++VMVMR +EDG  S AIDEFP+MD+DA+E  W++  E H+ +RE  F ++E D
Sbjct:   77 EFAVGELQKLSDSGIYRSLSLRSIRTASSQEGVFHHNTFLTLELACPHFKSGHDAETYDVMVMRHLEDGTYSFAIDEFPEMDEDAIETFWIQKVEQHRRYREETFRQMELD 187          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S2CNQ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNQ6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.510e-29
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            ++AL ELQ+LSD+GIY TL LD + +AA+  G+FH N FL+++ SSP+   GA    +EVMVMR  EDG  S AID+FP+MDDDA+E  W++  E H+  RE  F ++E D
Sbjct:   15 EFALGELQKLSDSGIYRTLSLDRIVSAATQDGIFHMNTFLSMQFSSPYFKSGALVEVYEVMVMRHKEDGTFSFAIDDFPEMDDDAIERFWIQKVEEHRRSREEAFRQMELD 125          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A5A8EMB3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EMB3_CAFRO)

HSP 1 Score: 111 bits (277), Expect = 2.060e-28
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    4 YALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            +AL EL+ LS++GIYETL LD +  AA+  G FH+N +LTL LSSPHL    SS  H+V+VM  +EDGVRS AIDEFP MD DA+E+ W+R     +  RE +F +LE++
Sbjct:   61 FALSELRLLSESGIYETLSLDKIHYAANQVGAFHNNTYLTLELSSPHLLHATSSL-HDVIVMADLEDGVRSFAIDEFPVMDGDAIEQFWIRKVMETKREREALFRQLEEE 169          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S1G8R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8R3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.720e-28
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   40 GIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            G+Y +L L  +  A++  G+FH N FLTL L+SPH A G   + H+VMVM+++EDGV S AIDEFP+MD+DA+E  W+   EAH+ +RE  FA +E D
Sbjct:    1 GVYRSLELSRIEEASTQDGIFHHNTFLTLVLASPHFAGGVPESRHQVMVMKALEDGVLSFAIDEFPEMDEDAIEAFWIEKVEAHRRFREASFAAIEAD 98          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S3XTW5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW5_HETAK)

HSP 1 Score: 105 bits (262), Expect = 1.430e-26
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   16 ELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAEL 324
            EL+  SDTGIYETL LD + +A    G++H+N++L L LSS H A    S     +VM+ +EDGVRS AID FP  DD+A+EE ++   E H+ WRE+VF EL
Sbjct:    1 ELRMSSDTGIYETLHLDKILSAWMQEGIYHENIYLELSLSSIHFASRKESETFNFIVMKHLEDGVRSFAIDRFPYFDDEAIEEFYIGKVEKHRRWREKVFQEL 103          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A485LJJ4_9STRA (Aste57867_20382 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJJ4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.270e-23
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 YALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            +A+ ELQ+LSDTGIY TL L  + +AA+  G FH N FL L L+SPH   G  +    V+VM+S  D + S AIDEFP MDDDA+E  W+   E ++  R  +FAE  +D
Sbjct:   46 FAVTELQKLSDTGIYTTLSLTRIKSAATQVGDFHFNTFLDLELASPHFKSGRPTESFSVVVMQSKLDDILSFAIDEFPVMDDDAIERFWIDMVERNRAKRRELFAEWNED 155          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A835ZC54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC54_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.840e-23
Identity = 51/110 (46.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 YALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELEQD 333
            +A+ EL++LSDTG+YE+L L S+ AAA+  GV+HDN FLTL L+SPH   G++  E EVMVM+   DG R+ AI EFP M   A+E+ +++  +A ++ R+    EL+++
Sbjct:   17 WAVSELRKLSDTGVYESLALKSIKAAATGAGVYHDNTFLTLVLASPHFDGGSAEEEFEVMVMQHKTDGHRNFAISEFPAMAAGAIEQFYMQKVDADRKLRDAALQELDRE 126          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A7S3H248_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H248_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.290e-23
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFAELE 327
            ++A+ EL +LSD+ IY TL L  ++ AA   G+FH N  LTL L SPH     S  E++++VM   EDGV++LAIDEFP MD+DA+EE ++R  E  ++ RE  F  LE
Sbjct:   44 EFAVAELSKLSDSEIYTTLSLKKINYAAEQDGIFHFNTLLTLELESPHFKSKKSVEEYKMIVMLHKEDGVKALAIDEFPVMDEDAIEEFYIRKIENRRKQREESFRRLE 152          
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Match: A0A1V9ZMN4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMN4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.720e-23
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLADGASSTEHEVMVMRSVE-DGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEWRERVFA 318
            ++A+ EL++LSDTGIY TL L  + + A+  G FH N +LTL L+SPH   G     +E++VM S++ D  +S AID FP+MDDDA+E  W+   E  ++ R  +FA
Sbjct:   44 EFAVTELRRLSDTGIYTTLSLHEIKSGATQEGDFHYNTYLTLELASPHFKSGQPVEPYEIVVMESLDADRRKSFAIDNFPEMDDDAIEAFWIEMVEHRRQQRREIFA 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112050.2523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WVW5_9STRA5.340e-3154.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CU23_9STRA1.020e-2950.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CNQ6_9STRA4.510e-2951.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5A8EMB3_CAFRO2.060e-2853.64Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1G8R3_9STRA8.720e-2851.02Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3XTW5_HETAK1.430e-2650.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A485LJJ4_9STRA1.270e-2348.18Aste57867_20382 protein n=1 Tax=Aphanomyces stella... [more]
A0A835ZC54_9STRA1.840e-2346.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H248_9STRA2.290e-2347.71Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9ZMN4_9STRA8.720e-2344.86Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112050contigM-pyrifera_M_contig112050:15..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog112098.XP_008608247.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E62Z@1,2SCUI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112050.2523.1prot_M-pyrifera_M_contig112050.2523.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112050 15..518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.1005535-CDS-M-pyrifera_M_contig112050:14..1041622815634.1005535-CDS-M-pyrifera_M_contig112050:14..104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 15..104 -
1692277497.484246-CDS-M-pyrifera_M_contig112050:14..1041692277497.484246-CDS-M-pyrifera_M_contig112050:14..104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 15..104 -
1622815634.1111195-CDS-M-pyrifera_M_contig112050:184..3431622815634.1111195-CDS-M-pyrifera_M_contig112050:184..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 185..343 -
1692277497.5051608-CDS-M-pyrifera_M_contig112050:184..3431692277497.5051608-CDS-M-pyrifera_M_contig112050:184..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 185..343 -
1622815634.1206553-CDS-M-pyrifera_M_contig112050:428..5181622815634.1206553-CDS-M-pyrifera_M_contig112050:428..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 429..518 -
1692277497.514277-CDS-M-pyrifera_M_contig112050:428..5181692277497.514277-CDS-M-pyrifera_M_contig112050:428..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112050 429..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112050.2523.1

>prot_M-pyrifera_M_contig112050.2523.1 ID=prot_M-pyrifera_M_contig112050.2523.1|Name=mRNA_M-pyrifera_M_contig112050.2523.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
QYALRELQQLSDTGIYETLRLDSVSAAASARGVFHDNVFLTLRLSSPHLA
DGASSTEHEVMVMRSVEDGVRSLAIDEFPDMDDDAVEEHWVRSAEAHQEW
RERVFAELEQDEE
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mRNA from alignment at M-pyrifera_M_contig112050:15..518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112050.2523.1 ID=mRNA_M-pyrifera_M_contig112050.2523.1|Name=mRNA_M-pyrifera_M_contig112050.2523.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig112050:15..518- (Macrocystis pyrifera P11B4 male)
CAGTACGCCCTGCGTGAGCTGCAGCAGCTGTCGGACACTGGGATTTACGA AACTCTGCGACTTGACTCTGTTTCGGCCGCAGCTTCGGCGGTGAGCCTTG CGCTGTGCGATCTGTGCCTTGCCCTGTTCGTGGTAGTGGGTGTGACGTCC GCTGACGCCTCGTCCGTGGTTGCAGCGGGGCGTGTTTCACGACAACGTGT TCTTGACGCTTCGGCTGTCGAGCCCGCACCTTGCGGACGGAGCGAGCAGC ACTGAGCACGAGGTGATGGTGATGCGGTCGGTGGAGGATGGAGTTCGCTC GCTGGCCATTGATGAGTTCCCGGACATGGACGATGTGCGTTCAGAGCGCG TGCAGGGATGCGTCGCGCGATGTTGGTTTCGCATCTCACGCCACACATTG TGCACGCCACGCAGGACGCAGTGGAGGAGCACTGGGTACGAAGCGCAGAG GCGCATCAGGAGTGGCGCGAGCGCGTGTTTGCGGAGCTGGAGCAAGACGA GGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112050:15..518-

>mRNA_M-pyrifera_M_contig112050.2523.1 ID=mRNA_M-pyrifera_M_contig112050.2523.1|Name=mRNA_M-pyrifera_M_contig112050.2523.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig112050:15..518- (Macrocystis pyrifera P11B4 male)
CAGTACGCCCTGCGTGAGCTGCAGCAGCTGTCGGACACTGGGATTTACGA
AACTCTGCGACTTGACTCTGTTTCGGCCGCAGCTTCGGCGCAGTACGCCC
TGCGTGAGCTGCAGCAGCTGTCGGACACTGGGATTTACGAAACTCTGCGA
CTTGACTCTGTTTCGGCCGCAGCTTCGGCGCGGGGCGTGTTTCACGACAA
CGTGTTCTTGACGCTTCGGCTGTCGAGCCCGCACCTTGCGGACGGAGCGA
GCAGCACTGAGCACGAGGTGATGGTGATGCGGTCGGTGGAGGATGGAGTT
CGCTCGCTGGCCATTGATGAGTTCCCGGACATGGACGATCGGGGCGTGTT
TCACGACAACGTGTTCTTGACGCTTCGGCTGTCGAGCCCGCACCTTGCGG
ACGGAGCGAGCAGCACTGAGCACGAGGTGATGGTGATGCGGTCGGTGGAG
GATGGAGTTCGCTCGCTGGCCATTGATGAGTTCCCGGACATGGACGATGA
CGCAGTGGAGGAGCACTGGGTACGAAGCGCAGAGGCGCATCAGGAGTGGC
GCGAGCGCGTGTTTGCGGAGCTGGAGCAAGACGAGGAGGACGCAGTGGAG
GAGCACTGGGTACGAAGCGCAGAGGCGCATCAGGAGTGGCGCGAGCGCGT
GTTTGCGGAGCTGGAGCAAGACGAGGAG
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